TCONS_00042057-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00042057-protein
Unique NameTCONS_00042057-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length406

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00042057-protein ID=TCONS_00042057-protein|Name=TCONS_00042057-protein|organism=Clytia hemisphaerica|type=polypeptide|length=406bp
MKVTVYLKKFLLFRGLPSNQNEAFRKAYGEIGNLRAMYSKKFMCLTATAN
KKTTRKIVQLLHLRNHKITRLSPEKPNVKISVKKLKQGTDFQEIIDHMRP
MVEDLNQKGSCQKTIIYCNSIALCGKVFLLFDRRYRGKAVGMFHGHTPQE
LKEIVMTEFSKNNGKCFIVVATSALGMGVNIRNVRHVIHVGLPSDVEAYI
QELGRAGRDGDQSSAFLFYRPCDIAHNADEELVRIIKNKEEKCRRVALLK
CFNEVPDNDFDNEKHKCCDECEKMCKCDECAVPKEEITPPKLKSVRSADD
EEKETILACLVSLTLSNEYVELVMENVNCIQTETDLLTLGLDESVSMFVS
LVFKEVFYIDNLKVLPIDDTKKDDIDILSMKQPYKEKSNDEIDFDSDNEI
FWQDFF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_025942XLOC_025942Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00042057TCONS_00042057Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR027417P-loop_NTPase
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 127..210
e-value: 1.1E-19
score: 81.4
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 103..209
e-value: 3.0E-21
score: 75.8
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 93..263
score: 18.292
NoneNo IPR availableGENE3D3.40.50.300coord: 15..72
e-value: 0.012
score: 14.5
NoneNo IPR availableGENE3D3.40.50.300coord: 75..275
e-value: 3.6E-33
score: 114.2
NoneNo IPR availableCDDcd00079HELICccoord: 112..218
e-value: 2.4142E-23
score: 93.0712
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 45..276

Blast
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BLAST of TCONS_00042057-protein vs. Swiss-Prot (Human)
Match: WRN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 2.231e-28
Identity = 83/285 (29.12%), Postives = 144/285 (50.53%), Query Frame = 0 
Query:   18 SNQNEAFRKAYGEIGNLR-AMYSKKFMCLTATANKKTTRKIVQLLHLRNHKITRLSPEKPNVKISVKKLKQGTDFQEIIDHMRPMVEDLNQKGSCQKTIIYCNSIALCGKVFLLFDRRYRGKAVGMFHGHTPQELKEIVMTEFSKNNGKCFIVVATSALGMGVNIRNVRHVIHVGLPSDVEAYIQELGRAGRDGDQSSAFLFYRPCDIAHNADEELVRIIKNKEEKCRRVALL----------KCFNEVPDNDFDNEK-----------HKCCDECEKMCKCDEC 280
            S     FR ++ ++G+L+ A+     + LTATA+      IV+ L+LRN +IT    ++PN+ + V++ K G   Q++   +         +G    TIIYC S  +  +V    + R    + G +H       ++ +   F ++  +C  V+AT A GMG+N  ++R VIH G P D+E+Y QE+GRAGRDG QSS  + + P DI  N +  L+  I+N++ +  ++ ++          +C  ++  + F++++            KCCD C    + D C
Sbjct:  674 SEWGHDFRDSFRKLGSLKTALPMVPIVALTATASSSIREDIVRCLNLRNPQITCTGFDRPNLYLEVRR-KTGNILQDLQPFLVKTSSHWEFEGP---TIIYCPSRKMTQQV--TGELRKLNLSCGTYHAGMSFSTRKDIHHRFVRDEIQC--VIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADI--NLNRHLLTEIRNEKFRLYKLKMMAKMEKYLHSSRCRRQIILSHFEDKQVQKASLGIMGTEKCCDNCRS--RLDHC 946
The following BLAST results are available for this feature:
BLAST of TCONS_00042057-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WRN2.231e-2829.12Werner syndrome ATP-dependent helicase OS=Homo sap... [more]
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