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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041918 ID=TCONS_00041918|Name=TCONS_00041918|organism=Clytia hemisphaerica|type=transcript|length=1754bp
CAGATTTTGTTCACAAGAATTCACTTTGGACAAGTTCGATCCGCAAGTTC
ATTTATCAAACAATTCCATACAAAAGCATTACCGCAATGGTATTCGATCT
GACAAGCTTCCTGATTCTAATATGTGGTCTAGTGATGAGTTCAAAACATA
TCTTCAAACTATAGGAAAAGATACATCTTGGGACAGTAAGATCTACCCTG
GAATGAAATCCGCCATCATTGGAGCTTTACAATGCTGTCAAACGTCTTTA
GAATATCGACGAAACTCTTTCGAACTTTACGGAGCCGATTTCATGTTGAG
TGAGAATTTAGACCCTTGGTTGATTGAGATAAATTCGAGTCCTGCTCTAG
GGGCCAGTACGCCGGTCACGAAGGAATTATGCCGGAACGTTATTGAGGAC
ACGCTGAAAGTTGTTTTAGATCGGAGGGAGAATAAACAGGCGGATGTTGG
TCGTTTTGAACTTGCTTTTCGGCAGCCGTACATTGCGCCACCCTCCTACA
TGGGGTGTAATGTCTACATAGAAGGAAAACAGATTTCAAAACCGAAAGTA
ACTAAAGCTCCGGAATCGAAGATAGAGCTTAAGAAATCCGATGATAATTG
TGATGATGCCGGACAAGAAGAAGAAAGTATGGTTGCCGTAAGAACAGACA
TTAAAAAAGTGAAATCTAAAGAGACGTGTGAAAATGCGAAAACCAAAACA
ACGAAATCCGCTCCAAAATTTGTTTACGAGAAAAAGGAGCCTCAGAGAAT
CGATAAAACTCGATTGGATGGCATTATCGAGAAATTAAGTCGAAGATCTA
AATCGAaagaaacaaaggaaaaaatcgaaataatcgaGAAAGCGAAATCT
TCCTTTGTTGCTCCTCGTATCGAGAAACAGTCGATGAAACAAATCGAGAA
ATCGGTTTCTGCTCCCAAATTAATCGATCGTGATCCTCGAGAGAAATTAT
CGGTAAACTCACATCGAATAACAACGTATAAAGACGAACTTAAGATCAAT
GTTACGAAACCGCATTCTGAGAAACGAAAAATGAAATGGGATAAAAtgga
atttttgagaaaaaatgctCCCGTGGTAACAGAATGGGTGAATGTCGATT
TCTCAAAAGCTGATGTACTTGGTCCCACCATATCCAGCTGCCCTACCACC
AAACATACACAAACATATTCAATACCTTCCAATAACATTAATAATAACAC
CATGACAATCTCTATCGCTGAAGTCATGGAAAACCAGACCATTAAACCAA
GCCTTTCCACAAATTGTGGAAAAATCAATCGACGAAAATCGGTCGGTCGG
AAGTTATGACTTCAGAGTTCTTCAGCAGAAATGTCACCAAGCTTACAGGc
taaagaaaacgaaaaataaacaaaaatcaaatatgACATCATCTACCAAA
CTAGCTTCTAACATGGGAACGAGGTCAAAACAATATGGTATCCTGGATGC
GGAGGATGTTTCTGGTGTACGACAGGTGCAAGGGAAGTATAGACAATTGT
TTTTGAATCCGAATCAAAAGGAAAATGTGCAACACTTACGACTCGAGCCG
TCTTCCAATAAACAGGAGAATGAAGAAACATGaggatttttatttataaa
cacaTTTTTACTAACCAAtactattttttaaataatacaaCCTTCACTTG
AACATAAATTTTATGAATAGCATTTTatttattggattttttttagTGTA
AGACCTGAATGAccttattttgaaatctttctacAAAACACCATACGTAA
AAAC Run BLAST on NCBI protein sequence of TCONS_00041918-protein >TCONS_00041918-protein ID=TCONS_00041918-protein|Name=TCONS_00041918-protein|organism=Clytia hemisphaerica|type=polypeptide|length=435bp
RFCSQEFTLDKFDPQVHLSNNSIQKHYRNGIRSDKLPDSNMWSSDEFKTY
LQTIGKDTSWDSKIYPGMKSAIIGALQCCQTSLEYRRNSFELYGADFMLS
ENLDPWLIEINSSPALGASTPVTKELCRNVIEDTLKVVLDRRENKQADVG
RFELAFRQPYIAPPSYMGCNVYIEGKQISKPKVTKAPESKIELKKSDDNC
DDAGQEEESMVAVRTDIKKVKSKETCENAKTKTTKSAPKFVYEKKEPQRI
DKTRLDGIIEKLSRRSKSKETKEKIEIIEKAKSSFVAPRIEKQSMKQIEK
SVSAPKLIDRDPREKLSVNSHRITTYKDELKINVTKPHSEKRKMKWDKME
FLRKNAPVVTEWVNVDFSKADVLGPTISSCPTTKHTQTYSIPSNNINNNT
MTISIAEVMENQTIKPSLSTNCGKINRRKSVGRKL Run BLAST on NCBI transcript from alignment at sc0003096:1809..4466- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041918 ID=TCONS_00041918|Name=TCONS_00041918|organism=Clytia hemisphaerica|type=transcript|length=2658bp|location=Sequence derived from alignment at sc0003096:1809..4466- (Clytia hemisphaerica)
CAGATTTTGTTCACAAGAATTCACTTTGGACAAGTTCGATCCGCAAGTTC
ATTTATCAAACAATTCCATACAAAAGCATTACCGCAATGGTATTCGATCT
GACAAGCTTCCTGATTCTAATATGTGGTCTAGTGATGAGTTCAAAACATA
TCTTCAAACTATAGGTAGGTAGCGAATAAGATTTGTATGTATAAAATGGT
TTAGCTTAGTACCTTTTCTCCTCAGGTTTAGTTTATTTCTAGTAAGAAGG
CAAGGTGTCAACTAGTCAGTCACATAGCCATGCTCCGCATATTCAGACCT
AAGTTTGTATCCCAAATTTACTCGTTTTTCAATTATCTTTTGAATAAGCC
AAAAATCATTGATTTTCGAGCACTTTCGATTTAGGCTAAAACATAGATTC
TAGGCCTAAAATACAATGCCCAAAATGAGCAGTTTGGGCATCGATTTAGA
AAAATCGGTCAATGACCTGAGATTCTGTAAGGGTTAAGCTGCCGAAAACC
GAAAAAAAAACAGAGATTGGAATCCCTTTCCGAGCGGAGCATGGCTTTGT
GACAGACTAAACTCGATTGTGGGTTTTTTACACAATTTTACACAAACTTA
AAAGGATACGTTCTATTTTTTTTCAAACTAAAGGTAGATTGTAAATATCA
TTTGATATTTATTATACCAATGTTCATCGATAGCTTTTTAAAAATGCCAA
GAAGATCTTCTCTCTATCAGCTTATAAAAATAGCTGGGTCTTCAACCTGA
ACTTTGTCAGACATAATTTAACTTTTCGTTGATTGTTTTGCATTCTGGAT
TCATTTTGCATTCATTTTTCTTGAGCTCCACTGAGCTGCAATTCATTTAG
ATCGCTCAAAATTTTTGTTAATTTGTATAATTATAGACGTCAAACACTCG
TAATGTATTATTGTATTGAAGAATAGCTGACTCAGCGTTATTTCAATTTT
AGGAAAAGATACATCTTGGGACAGTAAGATCTACCCTGGAATGAAATCCG
CCATCATTGGAGCTTTACAATGCTGTCAAACGTCTTTAGAATATCGACGA
AACTCTTTCGAACTTTACGGAGCCGATTTCATGTTGAGTGAGAATTTAGA
CCCTTGGTTGATTGAGATAAATTCGAGTCCTGCTCTAGGGGCCAGTACGC
CGGTCACGAAGGAATTATGCCGGAACGTTATTGAGGACACGCTGAAAGTT
GTTTTAGATCGGAGGGAGAATAAACAGGCGGATGTTGGTCGTTTTGAACT
TGCTTTTCGGCAGCCGTACATTGCGCCACCCTCCTACATGGGGTGTAATG
TCTACATAGAAGGAAAACAGATTTCAAAACCGAAAGTAACTAAAGCTCCG
GAATCGAAGATAGAGCTTAAGAAATCCGATGATAATTGTGATGATGCCGG
ACAAGAAGAAGAAAGTATGGTTGCCGTAAGAACAGACATTAAAAAAGTGA
AATCTAAAGAGACGTGTGAAAATGCGAAAACCAAAACAACGAAATCCGCT
CCAAAATTTGTTTACGAGAAAAAGGAGCCTCAGAGAATCGATAAAACTCG
ATTGGATGGCATTATCGAGAAATTAAGTCGAAGATCTAAATCGAAAGAAA
CAAAGGAAAAAATCGAAATAATCGAGAAAGCGAAATCTTCCTTTGTTGCT
CCTCGTATCGAGAAACAGTCGATGAAACAAATCGAGAAATCGGTTTCTGC
TCCCAAATTAATCGATCGTGATCCTCGAGAGAAATTATCGGTAAACTCAC
ATCGAATAACAACGTATAAAGACGAACTTAAGATCAATGTTACGAAACCG
CATTCTGAGAAACGAAAAATGAAATGGGATAAAATGGAATTTTTGAGAAA
AAATGCTCCCGTGGTAACAGAATGGGTGAATGTCGATTTCTCAAAAGCTG
ATGTACTTGGTCCCACCATATCCAGCTGCCCTACCACCAAACATACACAA
ACATATTCAATACCTTCCAATAACATTAATAATAACACCATGACAATCTC
TATCGCTGAAGTCATGGAAAACCAGACCATTAAACCAAGCCTTTCCACAA
ATTGTGGAAAAATCAATCGACGAAAATCGGTCGGTAAGAATGATAGTTTT
GAACCTGTCGTAAGTCAACAGGTTAGTCAACTTGTTAATTGTTATAGTGG
TGTTCAGGTTCAGCCTAATGACTCTACGTTTGATGTCTTATGTCCGCAGG
TCGGAAGTTATGACTTCAGAGTTCTTCAGCAGAAATGTCACCAAGCTTAC
AGGCTAAAGAAAACGAAAAATAAACAAAAATCAAATATGACATCATCTAC
CAAACTAGCTTCTAACATGGGAACGAGGTCAAAACAATATGGTATCCTGG
ATGCGGAGGATGTTTCTGGTGTACGACAGGTGCAAGGGAAGTATAGACAA
TTGTTTTTGAATCCGAATCAAAAGGAAAATGTGCAACACTTACGACTCGA
GCCGTCTTCCAATAAACAGGAGAATGAAGAAACATGAGGATTTTTATTTA
TAAACACATTTTTACTAACCAATACTATTTTTTAAATAATACAACCTTCA
CTTGAACATAAATTTTATGAATAGCATTTTATTTATTGGATTTTTTTTAG
TGTAAGACCTGAATGACCTTATTTTGAAATCTTTCTACAAAACACCATAC
GTAAAAAC Coding sequence (CDS) from alignment at sc0003096:1809..4466- >TCONS_00041918 ID=TCONS_00041918|Name=TCONS_00041918|organism=Clytia hemisphaerica|type=CDS|length=3924bp|location=Sequence derived from alignment at sc0003096:1809..4466- (Clytia hemisphaerica)
GTCGGAAGTTATGAGAAAAGATACATCTTGGGACAGTAAGATCTACCCTG
GAATGAAATCCGCCATCATTGGAGCTTTACAATGCTGTCAAACGTCTTTA
GAATATCGACGAAACTCTTTCGAACTTTACGGAGCCGATTTCATGTTGAG
TGAGAATTTAGACCCTTGGTTGATTGAGATAAATTCGAGTCCTGCTCTAG
GGGCCAGTACGCCGGTCACGAAGGAATTATGCCGGAACGTTATTGAGGAC
ACGCTGAAAGTTGTTTTAGATCGGAGGGAGAATAAACAGGCGGATGTTGG
TCGTTTTGAACTTGCTTTTCGGCAGCCGTACATTGCGCCACCCTCCTACA
TGGGGTGTAATGTCTACATAGAAGGAAAACAGATTTCAAAACCGAAAGTA
ACTAAAGCTCCGGAATCGAAGATAGAGCTTAAGAAATCCGATGATAATTG
TGATGATGCCGGACAAGAAGAAGAAAGTATGGTTGCCGTAAGAACAGACA
TTAAAAAAGTGAAATCTAAAGAGACGTGTGAAAATGCGAAAACCAAAACA
ACGAAATCCGCTCCAAAATTTGTTTACGAGAAAAAGGAGCCTCAGAGAAT
CGATAAAACTCGATTGGATGGCATTATCGAGAAATTAAGTCGAAGATCTA
AATCGAAAGAAACAAAGGAAAAAATCGAAATAATCGAGAAAGCGAAATCT
TCCTTTGTTGCTCCTCGTATCGAGAAACAGTCGATGAAACAAATCGAGAA
ATCGGTTTCTGCTCCCAAATTAATCGATCGTGATCCTCGAGAGAAATTAT
CGGTAAACTCACATCGAATAACAACGTATAAAGACGAACTTAAGATCAAT
GTTACGAAACCGCATTCTGAGAAACGAAAAATGAAATGGGATAAAATGGA
ATTTTTGAGAAAAAATGCTCCCGTGGTAACAGAATGGGTGAATGTCGATT
TCTCAAAAGCTGATGTACTTGGTCCCACCATATCCAGCTGCCCTACCACC
AAACATACACAAACATATTCAATACCTTCCAATAACATTAATAATAACAC
CATGACAATCTCTATCGCTGAAGTCATGGAAAACCAGACCATTAAACCAA
GCCTTTCCACAAATTGTGGAAAAATCAATCGACGAAAATCGGTCGAGATT
TTGTTCACAAGAATTCACTTTGGACAAGTTCGATCCGCAAGTTCATTTAT
CAAACAATTCCATACAAAAGCATTACCGCAATGGTATTCGATCTGACAAG
CTTCCTGATTCTAATATGTGGTCTAGTGATGAGTTCAAAACATATCTTCA
AACTATAGGTCGGAAGTTATGAGAAAAGATACATCTTGGGACAGTAAGAT
CTACCCTGGAATGAAATCCGCCATCATTGGAGCTTTACAATGCTGTCAAA
CGTCTTTAGAATATCGACGAAACTCTTTCGAACTTTACGGAGCCGATTTC
ATGTTGAGTGAGAATTTAGACCCTTGGTTGATTGAGATAAATTCGAGTCC
TGCTCTAGGGGCCAGTACGCCGGTCACGAAGGAATTATGCCGGAACGTTA
TTGAGGACACGCTGAAAGTTGTTTTAGATCGGAGGGAGAATAAACAGGCG
GATGTTGGTCGTTTTGAACTTGCTTTTCGGCAGCCGTACATTGCGCCACC
CTCCTACATGGGGTGTAATGTCTACATAGAAGGAAAACAGATTTCAAAAC
CGAAAGTAACTAAAGCTCCGGAATCGAAGATAGAGCTTAAGAAATCCGAT
GATAATTGTGATGATGCCGGACAAGAAGAAGAAAGTATGGTTGCCGTAAG
AACAGACATTAAAAAAGTGAAATCTAAAGAGACGTGTGAAAATGCGAAAA
CCAAAACAACGAAATCCGCTCCAAAATTTGTTTACGAGAAAAAGGAGCCT
CAGAGAATCGATAAAACTCGATTGGATGGCATTATCGAGAAATTAAGTCG
AAGATCTAAATCGAAAGAAACAAAGGAAAAAATCGAAATAATCGAGAAAG
CGAAATCTTCCTTTGTTGCTCCTCGTATCGAGAAACAGTCGATGAAACAA
ATCGAGAAATCGGTTTCTGCTCCCAAATTAATCGATCGTGATCCTCGAGA
GAAATTATCGGTAAACTCACATCGAATAACAACGTATAAAGACGAACTTA
AGATCAATGTTACGAAACCGCATTCTGAGAAACGAAAAATGAAATGGGAT
AAAATGGAATTTTTGAGAAAAAATGCTCCCGTGGTAACAGAATGGGTGAA
TGTCGATTTCTCAAAAGCTGATGTACTTGGTCCCACCATATCCAGCTGCC
CTACCACCAAACATACACAAACATATTCAATACCTTCCAATAACATTAAT
AATAACACCATGACAATCTCTATCGCTGAAGTCATGGAAAACCAGACCAT
TAAACCAAGCCTTTCCACAAATTGTGGAAAAATCAATCGACGAAAATCGG
TCGAGATTTTGTTCACAAGAATTCACTTTGGACAAGTTCGATCCGCAAGT
TCATTTATCAAACAATTCCATACAAAAGCATTACCGCAATGGTATTCGAT
CTGACAAGCTTCCTGATTCTAATATGTGGTCTAGTGATGAGTTCAAAACA
TATCTTCAAACTATAGGTCGGAAGTTATGAGAAAAGATACATCTTGGGAC
AGTAAGATCTACCCTGGAATGAAATCCGCCATCATTGGAGCTTTACAATG
CTGTCAAACGTCTTTAGAATATCGACGAAACTCTTTCGAACTTTACGGAG
CCGATTTCATGTTGAGTGAGAATTTAGACCCTTGGTTGATTGAGATAAAT
TCGAGTCCTGCTCTAGGGGCCAGTACGCCGGTCACGAAGGAATTATGCCG
GAACGTTATTGAGGACACGCTGAAAGTTGTTTTAGATCGGAGGGAGAATA
AACAGGCGGATGTTGGTCGTTTTGAACTTGCTTTTCGGCAGCCGTACATT
GCGCCACCCTCCTACATGGGGTGTAATGTCTACATAGAAGGAAAACAGAT
TTCAAAACCGAAAGTAACTAAAGCTCCGGAATCGAAGATAGAGCTTAAGA
AATCCGATGATAATTGTGATGATGCCGGACAAGAAGAAGAAAGTATGGTT
GCCGTAAGAACAGACATTAAAAAAGTGAAATCTAAAGAGACGTGTGAAAA
TGCGAAAACCAAAACAACGAAATCCGCTCCAAAATTTGTTTACGAGAAAA
AGGAGCCTCAGAGAATCGATAAAACTCGATTGGATGGCATTATCGAGAAA
TTAAGTCGAAGATCTAAATCGAAAGAAACAAAGGAAAAAATCGAAATAAT
CGAGAAAGCGAAATCTTCCTTTGTTGCTCCTCGTATCGAGAAACAGTCGA
TGAAACAAATCGAGAAATCGGTTTCTGCTCCCAAATTAATCGATCGTGAT
CCTCGAGAGAAATTATCGGTAAACTCACATCGAATAACAACGTATAAAGA
CGAACTTAAGATCAATGTTACGAAACCGCATTCTGAGAAACGAAAAATGA
AATGGGATAAAATGGAATTTTTGAGAAAAAATGCTCCCGTGGTAACAGAA
TGGGTGAATGTCGATTTCTCAAAAGCTGATGTACTTGGTCCCACCATATC
CAGCTGCCCTACCACCAAACATACACAAACATATTCAATACCTTCCAATA
ACATTAATAATAACACCATGACAATCTCTATCGCTGAAGTCATGGAAAAC
CAGACCATTAAACCAAGCCTTTCCACAAATTGTGGAAAAATCAATCGACG
AAAATCGGTCGAGATTTTGTTCACAAGAATTCACTTTGGACAAGTTCGAT
CCGCAAGTTCATTTATCAAACAATTCCATACAAAAGCATTACCGCAATGG
TATTCGATCTGACAAGCTTCCTGATTCTAATATGTGGTCTAGTGATGAGT
TCAAAACATATCTTCAAACTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041918-exon-sc0003096-1575043694:4303..4466 | TCONS_00041918-exon-sc0003096-1575043694:4303..4466 | Clytia hemisphaerica | exon |
| TCONS_00041918-exon-sc0003096-1575043694:2384..3514 | TCONS_00041918-exon-sc0003096-1575043694:2384..3514 | Clytia hemisphaerica | exon |
| TCONS_00041918-exon-sc0003096-1575043694:1809..2267 | TCONS_00041918-exon-sc0003096-1575043694:1809..2267 | Clytia hemisphaerica | exon |
| TCONS_00041918-exon-sc0003096-1510915933:4303..4466 | TCONS_00041918-exon-sc0003096-1510915933:4303..4466 | Clytia hemisphaerica | exon |
| TCONS_00041918-exon-sc0003096-1510915933:2384..3514 | TCONS_00041918-exon-sc0003096-1510915933:2384..3514 | Clytia hemisphaerica | exon |
| TCONS_00041918-exon-sc0003096-1510915933:1809..2267 | TCONS_00041918-exon-sc0003096-1510915933:1809..2267 | Clytia hemisphaerica | exon |
| TCONS_00041918-exon-sc0003096-1491911889:4303..4466 | TCONS_00041918-exon-sc0003096-1491911889:4303..4466 | Clytia hemisphaerica | exon |
| TCONS_00041918-exon-sc0003096-1491911889:2384..3514 | TCONS_00041918-exon-sc0003096-1491911889:2384..3514 | Clytia hemisphaerica | exon |
| TCONS_00041918-exon-sc0003096-1491911889:1809..2267 | TCONS_00041918-exon-sc0003096-1491911889:1809..2267 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0003096 | supercontig | sc0003096:1809..4466 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004344 | TTL/TTLL_fam |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006464 | cellular protein modification process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006464 |
cellular protein modification process |
Blast
BLAST of TCONS_00041918 vs. Swiss-Prot (Human)
Match: TTLL3 (Tubulin monoglycylase TTLL3 OS=Homo sapiens GN=TTLL3 PE=1 SV=2) HSP 1 Score: 191.43 bits (485), Expect = 5.022e-52 Identity = 90/182 (49.45%), Postives = 116/182 (63.74%), Query Frame = 2
Query: 2 RFCSQEFTLDKFDPQVHLSNNSIQKHYRNGI-RSDKLPDSNMWSSDEFKTYLQTIGKDTSWDSKIYPGMKSAIIGALQCCQTSLEYRRNSFELYGADFMLSENLDPWLIEINSSPALGASTPVTKELCRNVIEDTLKVVLDRRENKQADVGRFELAFRQPYIAPPSYMGCNVYIEGKQISKP 544
RF +Q F+L D VHL NNSIQKH N R LP NMWSS F+ +LQ +G +W + I PGMK A+I ALQ Q +++ R+ SFELYGADF+ E+ PWLIEIN+SP + ST VT LC V DTL+VV+DR ++ D G FEL ++QP + P Y+G + +EG I KP
Sbjct: 360 RFSTQPFSLKNLDNSVHLCNNSIQKHLENSCHRHPLLPPDNMWSSQRFQAHLQEMGAPNAWSTIIVPGMKDAVIHALQTSQDTVQCRKASFELYGADFVFGEDFQPWLIEINASPTMAPSTAVTARLCAGVQADTLRVVIDRMLDRNCDTGAFELIYKQPAVEVPQYVGIRLLVEGFTIKKP 541
The following BLAST results are available for this feature:
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