TCONS_00041896 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041896
Unique NameTCONS_00041896
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length487

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041896 ID=TCONS_00041896|Name=TCONS_00041896|organism=Clytia hemisphaerica|type=transcript|length=487bp
AAAGgctctcaaaattttaaatttaactcTACCCAATTTTCACATATAAG
CTATTGTATTTCTTTTCTAGTGTTACATtctatgaaataaaaaagaaaat
aaatttaataatGGAAGGGCAGGGGCAAAGTTATGGCTCCTCCTATTCTG
GTtcagattttgattttgttgaattcATCAAAAGACCATTGACTATCTGC
AGATTATTATGTATTCTTTTCGCTATCGTTGTTTTTGGATGTATCTCAGC
TGGTGGTTATGATGATGCATCAAAGCATTGTGTGTTCAACAGAAACAAAA
ACGCCTGTCAATATGGTGTTGCCATTGGTGTTATCGCATTCCTAGCGTGT
CTACTATTCCTTGCTGTTGACGCACAATTTGACAGCATTAGTAACACAGT
CAACAGACGTCACCTGGTGACTGCGGATCTTGGATTTTCAGCTTTCTGGA
CATTTCTTTGGTTCGTTGGCTTTTGTTTCTTGGCTGA
Run BLAST on NCBI

protein sequence of TCONS_00041896-protein

>TCONS_00041896-protein ID=TCONS_00041896-protein|Name=TCONS_00041896-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MEGQGQSYGSSYSGSDFDFVEFIKRPLTICRLLCILFAIVVFGCISAGGY
DDASKHCVFNRNKNACQYGVAIGVIAFLACLLFLAVDAQFDSISNTVNRR
HLVTADLGFSAFWTFLWFVGFCFLA
Run BLAST on NCBI

transcript from alignment at sc0003074:9166..13552+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041896 ID=TCONS_00041896|Name=TCONS_00041896|organism=Clytia hemisphaerica|type=transcript|length=4387bp|location=Sequence derived from alignment at sc0003074:9166..13552+ (Clytia hemisphaerica)
AAAGgctctcaaaattttaaatttaactcTACCCAATTTTCACATATAAG
CTATTGTATTTCTTTTCTAGTGTTACATtctatgaaataaaaaagaaaat
aaatttaataatGGAAGGGCAGGGGCAAAGTTATGGCTCCTCCTATTCTG
GTtcagattttgattttgttgaattcATCAAAAGACCATTGACTATCTGC
AGATTATTATGTATTGTAAGTGATTTTACCCTTTTTGGCTGAATTTTGTT
CTGcatctaaagtctgtctcaaaagtaaGCTGACActttaattttttaac
aattatgcttttttgaaaaattatacactgttagaaatatgatgtaatta
ttttgaataaacaccccgggcgtttattaaattttttgtgtgtttattcg
agggggcgtttaaaagaagggagcgtttattaaataatttccaTTCAAGA
TCACCTTTGGAGGGAATCAATACCCTAATTTGTCTTTATTGATCTTTAAC
CCCAAATATCCCtgtttaaaaacataaaattgtGTCAAAATTACTTTAGT
TGTGAAGATGCTACAAATTTTAATTAACCAATATGtatctttgattttat
ttaaacaCTTTCTTGATGCTTGAAGccacttgtttcaaataaacgcccct
acTGGAGGGGGCGTTAATTCGaaggggggcgtttattgaatAATTTCCCT
TTTAGAGGGCGTTTAAAGgaaaggggcgtttattcgaagtaataattaaa
atgttttataCTATCaagaatcaaaattcaaaaatcatagCATGACACTT
ATATTTGAACCTCACTGATTTCCAATCCATGTTCTGATTTTTCAAGTGTC
TATATCATCTTTTGTATAATTCCCTTCGAGAAtatctttcaaacttttta
acaTAGGGTTCTgagaaattgttgaaaaagtaaagtgtccacatactttt
gagatagacctaaatatatatttttatactTGAAACTGAGAGTAAAACAA
ATTAATTAATATTTCAATGTTGTTCTTTAATTGTCTTTATCACTCTTCAG
ATAGAGAAAAACGTGACTTTTCAGAAGCCTGGAGAGGTTATTTTTCCTGG
AGGGTTTCTTGGGATttataagtaagtctgcgactaCAGTTGGAGGTGAC
TCAAAGGTTCCTTATTCGATAGCTGCCTACCCAATGGTAGCGAAGAGtca
tcatagtgtcctccccccccctttataaagggggggaaaccaattttcca
attttgaatgggtgaggggggaaaatgaaaatttgaataccgggtgcagc
agaaaaaactttggacgtttggtgagccactgggaccgagcaaagtcttg
tttagactcaaaaccacttttattagaaagaggacatgctaacttaaatt
ttgaggtatcattcattaaatttgaaacaaaactttttgagaTATTGCTA
TTTGAAGCTCAAAATTACTTATCAAAAAGAGCAAAAATNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
TCCCGATAAGATAATGGTTTGGGTTGGTGTGATGAGAAATGGGACAATAT
TTGGTCCTCATGTTGTACGTGGCAAGCTCGATACACGTGAATACCTCAGG
ATCGTCAGGTTCAACGTTGTCCAACGAGAGTTTCAAAGGCACGGGGTCAA
CCAAAGAAATGTATGGTGGCAACAAGACGGAGCTCCCGCTCATACCAGCA
ATCGGTCATTGAGATATCTACAAGGTCAATTTCCTGGACGCGTCATGAGT
AAGAGAGGTGATTGGGATTGGCCTGCTAGATCTCCAGACTTGGCAATATG
CGACTTCTTTCTCTGGGGCCATTTGAAGCAAATGATTTGGGACGTTCCTG
TACAAAACCAACCCCAAAGTTCAAACCCTCAACGAGCTCGAGAATCGACT
CAGACAAGCTTGTAATAATCTTAATCCTGTCTTTATCAGAAAAGCTTTTG
ACGGTATGGTTACACGCGCTAGGAAATGTATTGCTGTCGGTGGTGGCTCT
TTTCCTAATGAATGATGTTCAAACTTTATAAATTATTGATATTTTCCAGA
GCTTATAAATATTTAAACTtcgttttaaaaaagaaaaaaagttgtgTTCT
GTAAAACATACCTCGACAACACTGTCTATCGTCACAACATTTTAATTACC
CATTGTTGacgtttttttacacttttcgaaaagtgaattttaacttcaaa
agcttataacttgacaactacttgaccaaacttaaaaagttataccgcaa
aatttaagtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGcatgtcctctttctaataaaagtggttttgagtctaaacaagac
tttgttcggcctcagtggctcgccaaacgtccaaagttttttctgctgca
cccggtagtaaaagggggaaaaaaaagagggggaaaacatcgatagttgg
caaatttggtgggggggggagtgtgaaatcacttcaattttatctcagca
accaaggtcagtccacattatatcatgtgattagatcatgattgaaaaat
taaccaattttcgttctattttgtctagtattccttttgcagcaaaattt
tacgtttgtgtcaggttgaaatttgagaaatctatatgggtatatggggg
gaaaatgatattttcagaatttctagggggaaagcaaaaaagagagggga
aactaaaaaactgaaaagtcatagggggaaaaaaaagaggggggagattt
aaaaaaatcaagaatttggtggggggaacaaaccctNGGCTGACCAGTGG
CGTAAAAGTCCAATGCAATCACAGAATGTGACAAACCATGCTAGAGCAGC
CATTGCATTCTCCTTCTTCTCTATATTCACATGGGTGAGGATTGATTGAG
GATTTTTTTTCGAAGGGAATTGTACTGTAGTCACAAATAGTTAAACACTT
GTTTACTGAGGTTATTGTCAAAAAAGAGTCTCTTATTTTCCTCTAAAAGA
CTAATATTTAGTCTNTCGTTAGGTTGCTAAGCCATTTTTGCCATCCTATT
ATTATGAGAACTTACTTGCCTGTACAAATTGTGTAAAATTGATTCTTATC
CTGTCTCTCTTTTAGCTTTTCGCTATCGTTGTTTTTGGATGTATCTCAGC
TGGTGGTTATGATGATGCATCAAAGCATTGTGTGTTCAACAGAAACAAAA
ACGCCTGTCAATATGGTGTTGCCATTGGTGTTATCGCATTCCTAGCGTGT
CTACTATTCCTTGCTGTTGACGCACAATTTGACAGCATTAGTAACACAGT
CAACAGACGTCACCTGGTGACTGCGGATCTTGGATTTTCAGCTTTCTGGA
CATTTCTTTGGTTCGTTGGCTTTTGTTTCTTGGCTGA

Coding sequence (CDS) from alignment at sc0003074:9166..13552+

>TCONS_00041896 ID=TCONS_00041896|Name=TCONS_00041896|organism=Clytia hemisphaerica|type=CDS|length=750bp|location=Sequence derived from alignment at sc0003074:9166..13552+ (Clytia hemisphaerica)
atGGAAGGGCAGGGGCAAAGTTATGGCTCCTCCTATTCTGGTtcagattt
tgattttgttgaattcATCAAAAGACCATTGACTATCTGCAGATTATTAT
GTATTCTTTTCGCTATCGTTGTTTTTGGATGTATCTCAGCTGGTGGTTAT
GATGATGCATCAAAGCATTGTGTGTTCAACAGAAACAAAAACGCCTGTCA
ATATGGTGTTGCCATTGGTGTTATCGCATTCCTAGCGTGTCTACTATTCC
TTGCTGTTGACGCACAATTTGACAGCATTAGTAACACAGTCAACAGACGT
CACCTGGTGACTGCGGATCTTGGATTTTCAGCTTTCTGGACATTTCTTTG
GTTCGTTGGCTTTTGTTTCTTGGCTatGGAAGGGCAGGGGCAAAGTTATG
GCTCCTCCTATTCTGGTtcagattttgattttgttgaattcATCAAAAGA
CCATTGACTATCTGCAGATTATTATGTATTCTTTTCGCTATCGTTGTTTT
TGGATGTATCTCAGCTGGTGGTTATGATGATGCATCAAAGCATTGTGTGT
TCAACAGAAACAAAAACGCCTGTCAATATGGTGTTGCCATTGGTGTTATC
GCATTCCTAGCGTGTCTACTATTCCTTGCTGTTGACGCACAATTTGACAG
CATTAGTAACACAGTCAACAGACGTCACCTGGTGACTGCGGATCTTGGAT
TTTCAGCTTTCTGGACATTTCTTTGGTTCGTTGGCTTTTGTTTCTTGGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025791XLOC_025791Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041896-proteinTCONS_00041896-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041896-exon-sc0003074-1491911889:9166..9380TCONS_00041896-exon-sc0003074-1491911889:9166..9380Clytia hemisphaericaexon
TCONS_00041896-exon-sc0003074-1510915933:9166..9380TCONS_00041896-exon-sc0003074-1510915933:9166..9380Clytia hemisphaericaexon
TCONS_00041896-exon-sc0003074-1575043694:9166..9380TCONS_00041896-exon-sc0003074-1575043694:9166..9380Clytia hemisphaericaexon
TCONS_00041896-exon-sc0003074-1491911889:13281..13552TCONS_00041896-exon-sc0003074-1491911889:13281..13552Clytia hemisphaericaexon
TCONS_00041896-exon-sc0003074-1510915933:13281..13552TCONS_00041896-exon-sc0003074-1510915933:13281..13552Clytia hemisphaericaexon
TCONS_00041896-exon-sc0003074-1575043694:13281..13552TCONS_00041896-exon-sc0003074-1575043694:13281..13552Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003074supercontigsc0003074:9166..13552 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
66.9397	60.4944	53.7832	39.1516	48.1427	36.5121	53.0177	50.5015	67.6388	67.6414	61.0402	46.8491	45.5946	42.3326	49.7012	48.9312	44.5212	41.4924	33.3571	42.9623	30.1267	32.3964	58.6683	57.8644	25.254	30.1522	46.6122	34.7497	67.987	61.7502
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008253Marvel
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
Blast
[Close]
BLAST of TCONS_00041896 vs. Swiss-Prot (Human)
Match: SNG2 (Synaptogyrin-2 OS=Homo sapiens GN=SYNGR2 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 5.778e-38
Identity = 62/112 (55.36%), Postives = 80/112 (71.43%), Query Frame = 3 
Query:  159 FDFVEFIKRPLTICRLLCILFAIVVFGCISAGGYDDASK----HCVFNRNKNACQYGVAIGVIAFLACLLFLAVDAQFDSISNTVNRRHLVTADLGFSAFWTFLWFVGFCFL 482
            FD   F+ +P  + R +C++FA++VF CI   GY +A +    +CVFNRN++AC+YG AIGV+AFLA   FL VDA F  ISN  +R++LV  DL FSA WTFLWFVGFCFL
Sbjct:   15 FDLRRFLTQPQVVARAVCLVFALIVFSCIYGEGYSNAHESKQMYCVFNRNEDACRYGSAIGVLAFLASAFFLVVDAYFPQISNATDRKYLVIGDLLFSALWTFLWFVGFCFL 126
The following BLAST results are available for this feature:
BLAST of TCONS_00041896 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SNG25.778e-3855.36Synaptogyrin-2 OS=Homo sapiens GN=SYNGR2 PE=1 SV=1[more]
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