TCONS_00041896-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00041896-protein
Unique NameTCONS_00041896-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length125

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00041896-protein ID=TCONS_00041896-protein|Name=TCONS_00041896-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
MEGQGQSYGSSYSGSDFDFVEFIKRPLTICRLLCILFAIVVFGCISAGGY
DDASKHCVFNRNKNACQYGVAIGVIAFLACLLFLAVDAQFDSISNTVNRR
HLVTADLGFSAFWTFLWFVGFCFLA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_025791XLOC_025791Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00041896TCONS_00041896Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008253Marvel
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008253Marvel domainPFAMPF01284MARVELcoord: 22..125
e-value: 1.4E-18
score: 67.2
IPR008253Marvel domainPROSITEPS51225MARVELcoord: 22..125
score: 14.465

Blast
[Close]
BLAST of TCONS_00041896-protein vs. Swiss-Prot (Human)
Match: SNG2L (Putative synaptogyrin-2 like protein OS=Homo sapiens PE=5 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.270e-40
Identity = 65/122 (53.28%), Postives = 84/122 (68.85%), Query Frame = 0 
Query:    7 SYGSSYSGSDFDFVEFIKRPLTICRLLCILFAIVVFGCISAGGYDDASK----HCVFNRNKNACQYGVAIGVIAFLACLLFLAVDAQFDSISNTVNRRHLVTADLGFSAFWTFLWFVGFCFL 124
            +YG + +G  FD   F+ +P  + R LC++FA++VF CI   GY +  K    +CVFN N++AC+YG AIGV+AFLA   FL VDA F  ISN  +R++LV  DL FSA WTFLWFVGFCFL
Sbjct:    5 AYGVAEAGGSFDLRPFLTQPQVVARALCLVFALIVFSCIYGEGYSNTHKSKQMYCVFNHNEDACRYGSAIGVLAFLASA-FLVVDAYFPQISNATDRKYLVIGDLLFSALWTFLWFVGFCFL 125
The following BLAST results are available for this feature:
BLAST of TCONS_00041896-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SNG2L6.270e-4053.28Putative synaptogyrin-2 like protein OS=Homo sapie... [more]
back to top