TCONS_00041857 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041857
Unique NameTCONS_00041857
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length396

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041857 ID=TCONS_00041857|Name=TCONS_00041857|organism=Clytia hemisphaerica|type=transcript|length=396bp
ATCTACATTTCACAGCGAACAAGCTATAGCTTATGGAACAAATATGGTCG
GTGGTGTCAACCCAAAGAAAGCTGGAAGTGAACATATTGGTCTGCCTGTT
TTTGCTAGTGTCAGAGAgGCGAGAGAGGCAACAAATTGCGACGCCACAGT
CATTTATGTCCCTCCTCCTGGTGCTGCTGCAGCTATCATTGAAGCTGTCG
AAGCGGAAGTCCCACTGATTACTTGTATCACTGAGGGTATCCCACAACAA
GATATGGTTAAGGTTAAACATGTTCTGGAAAGACAAAGCAAATCTCGGTT
AATTGGTCCCAACTGTCCTGGAATCATTAAGCCAGGAGAATGCAAGATTG
GTATAATGCCTGGACACATTCATCGACCTGGATCAGTTGGTAAGTG
Run BLAST on NCBI

protein sequence of TCONS_00041857-protein

>TCONS_00041857-protein ID=TCONS_00041857-protein|Name=TCONS_00041857-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
STFHSEQAIAYGTNMVGGVNPKKAGSEHIGLPVFASVREAREATNCDATV
IYVPPPGAAAAIIEAVEAEVPLITCITEGIPQQDMVKVKHVLERQSKSRL
IGPNCPGIIKPGECKIGIMPGHIHRPGSVGK
Run BLAST on NCBI

transcript from alignment at sc0003050:1143..3719-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041857 ID=TCONS_00041857|Name=TCONS_00041857|organism=Clytia hemisphaerica|type=transcript|length=2577bp|location=Sequence derived from alignment at sc0003050:1143..3719- (Clytia hemisphaerica)
ATCTACATTTCACAGCGAACAAGCTATAGCTTATGGAACAAATATGGTCG
GTGGTGTCAACCCAAAGAAAGCTGGAAGTGAACATATTGGTCTGCCTGTT
TTTGCTAGTGTCAGAGAGGTATTTTTGCAATTTCTCTCCTCATTTCCTTA
AAATATTGTAATTAGTTTTATTATGAAAATAAATTTCTAGATTAAGGACA
ACATTTAATGCATCTGTCACTGTTTGGTTAGACAGTATTTAAAAAAAACC
TTCATTTGATTGTGAAATTACCTTTCTCTATAACTGTAACTTGTGATAAT
CTTTTGTCATAGGCGAGAGAGGCAACAAATTGCGACGCCACAGTCATTTA
TGTCCCTCCTCCTGGTGCTGCTGCAGCTATCATTGAAGCTGTCGAAGCGG
AAGTCCCACTGATTACTTGTATCACTGAGGGTATCCCACAACAAGATATG
GTTAAGGTAAATAGAAAGCATGGCGATAAATTCGTTGCATTTTTTTCAAT
TTCAGACTCACATTTGTGACTTTACCATGGGGTTGCTTTATTTCTTTTGC
ACTATACTATAGGGGACTAAAGAAAACCTGGAAAAACAAAGGCTACTAGA
AAAACCTCCAGTCGGATGTGTCTATGTATAAGGGATAACAAAAAGGATAG
AGAAATGATAAAAAAATAGTGATAAATTTCTTTATTGGCAATCGTACATG
TGCTTCTGTATGGAAATTCGCTTTTCAGGTTAAACATGTTCTGGAAAGAC
AAAGCAAATCTCGGTTAATTGGTCCCAACTGTCCTGGAATCATTAAGGTA
AAATGAAGTATCTTCAAAATTGAAAAGAATGTCCAAGTGATGCAACAATT
CTTTTTCACCCAGTTGATTTTTAAATGATACTCTAGATGCTTAAGCGACT
TTTTGGGAATTCCCTATTTTTGTTAAAATTTCTACGATTTCTACAAATCT
TTCTATACTATAGAAAGAAAAACGTTTTTTCAAAGGCGTTGGTCTAAAAG
TTGAATTTTCAAACTTATTTTTTTGGAAAAAAGTTAAGAATTTAACATAT
TACCTAATAGTGAGGTCAGGTAGCACATAAAAACGTAAGAATACTTCAGA
TGGTGATTAAAGCATGAAATTTGGCACAGATGATCCTTAGAGGGTTTAAA
ACTTAATTTTAAACAGTAACACCAAATTTTGCCACCTGGCCACCTGCCAG
ATGACGTCATCAGGTGGCTGGGCAGAAAATTATTTTTTTGAAAAAATTCA
AAATCTGATGGTTCCAACGGAAAGAGCATGAAATGCTGATAAAAATTGAG
GTATAAAACATGCCTTGAAAATCTTCCTATCAAAAGTTATGGAGGTTGAA
AGTTTTTTGATGACGTCATCATNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTGTTTAGACCCAAGCATCAGATGGAACTTC
AAATTTTGACATGGATTCATGTATAAAACACTAAATTTGGTCAACTAGTT
CCGTTGTTACGGGATTTTAGGTTTTGCCTGGAAAGGCTTATGATGACGTC
ATCGCGAAACTTTAAACTTTCATAACTTTTGATAGGAAGATTTTGAAGGC
ATGTTTTATACCTCGATTTTCATCAGCATTTCATGCTCTTTCCACTGATA
CCATCAGATTTTAAATATTTTCAANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTACTGTTTAAAATTAA
GTTTTAGACCCTCTAAGGATCATCTGTGCCAAATTTCATGCTTTAATCAC
CATCTGAAGTATTTTTGTGCTAACAGACCTCACTATAATTAAAAAGCAGT
TTTACTATCCATGATATTATCCTGAATTTCATGAAGATTTAAAGAATTAG
AAAGGTAAACGAGAGTAGCGAAATGATACAGTCCACTGCTAATATTGCTC
TCTTATCAATAGCCAGGAGAATGCAAGATTGGTATAATGCCTGGACACAT
TCATCGACCTGGATCAGTTGGTAAGTG

Coding sequence (CDS) from alignment at sc0003050:1143..3719-

>TCONS_00041857 ID=TCONS_00041857|Name=TCONS_00041857|organism=Clytia hemisphaerica|type=CDS|length=1572bp|location=Sequence derived from alignment at sc0003050:1143..3719- (Clytia hemisphaerica)
CCAGGAGAATGCAAGATTGGTATAATGCCTGGACACATTCATCGACCTGG
ATCAGTTGGTAAGGTTAAACATGTTCTGGAAAGACAAAGCAAATCTCGGT
TAATTGGTCCCAACTGTCCTGGAATCATTAAGGCGAGAGAGGCAACAAAT
TGCGACGCCACAGTCATTTATGTCCCTCCTCCTGGTGCTGCTGCAGCTAT
CATTGAAGCTGTCGAAGCGGAAGTCCCACTGATTACTTGTATCACTGAGG
GTATCCCACAACAAGATATGGTTAAGTCTACATTTCACAGCGAACAAGCT
ATAGCTTATGGAACAAATATGGTCGGTGGTGTCAACCCAAAGAAAGCTGG
AAGTGAACATATTGGTCTGCCTGTTTTTGCTAGTGTCAGAGAGCCAGGAG
AATGCAAGATTGGTATAATGCCTGGACACATTCATCGACCTGGATCAGTT
GGTAAGGTTAAACATGTTCTGGAAAGACAAAGCAAATCTCGGTTAATTGG
TCCCAACTGTCCTGGAATCATTAAGGCGAGAGAGGCAACAAATTGCGACG
CCACAGTCATTTATGTCCCTCCTCCTGGTGCTGCTGCAGCTATCATTGAA
GCTGTCGAAGCGGAAGTCCCACTGATTACTTGTATCACTGAGGGTATCCC
ACAACAAGATATGGTTAAGTCTACATTTCACAGCGAACAAGCTATAGCTT
ATGGAACAAATATGGTCGGTGGTGTCAACCCAAAGAAAGCTGGAAGTGAA
CATATTGGTCTGCCTGTTTTTGCTAGTGTCAGAGAGCCAGGAGAATGCAA
GATTGGTATAATGCCTGGACACATTCATCGACCTGGATCAGTTGGTAAGG
TTAAACATGTTCTGGAAAGACAAAGCAAATCTCGGTTAATTGGTCCCAAC
TGTCCTGGAATCATTAAGGCGAGAGAGGCAACAAATTGCGACGCCACAGT
CATTTATGTCCCTCCTCCTGGTGCTGCTGCAGCTATCATTGAAGCTGTCG
AAGCGGAAGTCCCACTGATTACTTGTATCACTGAGGGTATCCCACAACAA
GATATGGTTAAGTCTACATTTCACAGCGAACAAGCTATAGCTTATGGAAC
AAATATGGTCGGTGGTGTCAACCCAAAGAAAGCTGGAAGTGAACATATTG
GTCTGCCTGTTTTTGCTAGTGTCAGAGAGCCAGGAGAATGCAAGATTGGT
ATAATGCCTGGACACATTCATCGACCTGGATCAGTTGGTAAGGTTAAACA
TGTTCTGGAAAGACAAAGCAAATCTCGGTTAATTGGTCCCAACTGTCCTG
GAATCATTAAGGCGAGAGAGGCAACAAATTGCGACGCCACAGTCATTTAT
GTCCCTCCTCCTGGTGCTGCTGCAGCTATCATTGAAGCTGTCGAAGCGGA
AGTCCCACTGATTACTTGTATCACTGAGGGTATCCCACAACAAGATATGG
TTAAGTCTACATTTCACAGCGAACAAGCTATAGCTTATGGAACAAATATG
GTCGGTGGTGTCAACCCAAAGAAAGCTGGAAGTGAACATATTGGTCTGCC
TGTTTTTGCTAGTGTCAGAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025757XLOC_025757Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041857-exon-sc0003050-1575043694:3602..3719TCONS_00041857-exon-sc0003050-1575043694:3602..3719Clytia hemisphaericaexon
TCONS_00041857-exon-sc0003050-1575043694:3264..3407TCONS_00041857-exon-sc0003050-1575043694:3264..3407Clytia hemisphaericaexon
TCONS_00041857-exon-sc0003050-1575043694:2923..2991TCONS_00041857-exon-sc0003050-1575043694:2923..2991Clytia hemisphaericaexon
TCONS_00041857-exon-sc0003050-1575043694:1143..1207TCONS_00041857-exon-sc0003050-1575043694:1143..1207Clytia hemisphaericaexon
TCONS_00041857-exon-sc0003050-1510915933:3602..3719TCONS_00041857-exon-sc0003050-1510915933:3602..3719Clytia hemisphaericaexon
TCONS_00041857-exon-sc0003050-1510915933:3264..3407TCONS_00041857-exon-sc0003050-1510915933:3264..3407Clytia hemisphaericaexon
TCONS_00041857-exon-sc0003050-1510915933:2923..2991TCONS_00041857-exon-sc0003050-1510915933:2923..2991Clytia hemisphaericaexon
TCONS_00041857-exon-sc0003050-1510915933:1143..1207TCONS_00041857-exon-sc0003050-1510915933:1143..1207Clytia hemisphaericaexon
TCONS_00041857-exon-sc0003050-1491911889:3602..3719TCONS_00041857-exon-sc0003050-1491911889:3602..3719Clytia hemisphaericaexon
TCONS_00041857-exon-sc0003050-1491911889:3264..3407TCONS_00041857-exon-sc0003050-1491911889:3264..3407Clytia hemisphaericaexon
TCONS_00041857-exon-sc0003050-1491911889:2923..2991TCONS_00041857-exon-sc0003050-1491911889:2923..2991Clytia hemisphaericaexon
TCONS_00041857-exon-sc0003050-1491911889:1143..1207TCONS_00041857-exon-sc0003050-1491911889:1143..1207Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041857-proteinTCONS_00041857-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003050supercontigsc0003050:1143..3719 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
288.222	320.161	352.56	421.846	159.547	122.77	144.46	157.163	186.5	168.567	206.595	251.728	245.007	234.697	263.789	248.12	407.571	396.296	170.917	171.018	367.894	381.584	231.199	236.527	142.516	142.151	233.565	256.47	135.962	146.407
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003781CoA-bd
IPR016102Succinyl-CoA_synth-like
IPR016040NAD(P)-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0048037cofactor binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0048037 cofactor binding
Blast
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BLAST of TCONS_00041857 vs. Swiss-Prot (Human)
Match: SUCA (Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial OS=Homo sapiens GN=SUCLG1 PE=1 SV=4)

HSP 1 Score: 150.599 bits (379), Expect = 2.768e-44
Identity = 91/129 (70.54%), Postives = 107/129 (82.95%), Query Frame = 2 
Query:    5 TFHSEQAIAYGTNMVGGVNPKKAGSEHIGLPVFASVREAREATNCDATXXXXXXXXXXXXXXXXXXXXXXXXTCITEGIPQQDMVKVKHVLERQSKSRLIGPNCPGIIKPGECKIGIMPGHIHRPGSVG 391
            TFHS+QA+ YGT +VGG  P K G  H+GLPVF +V+EA+E T   A+VIYVPPP AAAAI EA+EAE+PL+ CITEGIPQQDMV+VKH L RQ K+RLIGPNCPG+I PGECKIGIMPGHIH+ G +G
Sbjct:   69 TFHSQQALEYGTKLVGGTTPGKGGQTHLGLPVFNTVKEAKEQTGATASVIYVPPPFAAAAINEAIEAEIPLVVCITEGIPQQDMVRVKHKLLRQEKTRLIGPNCPGVINPGECKIGIMPGHIHKKGRIG 197
The following BLAST results are available for this feature:
BLAST of TCONS_00041857 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SUCA2.768e-4470.54Succinate--CoA ligase [ADP/GDP-forming] subunit al... [more]
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