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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041782 ID=TCONS_00041782|Name=TCONS_00041782|organism=Clytia hemisphaerica|type=transcript|length=864bp
attatgtttaaaaaatgaattctgtgaatgaagaaatgaaaaaagaaatt
gacaaaGAAGAAGTTCATGGTTGTGATGAAACCAATCATAATAATttgga
aattattatcaaactGGAAGATGAATCAATTGGATATCCAGACGACGCAA
TTTTGGAACCATTACAAAACCATGAAAGTGAATTATTTAATAATTCTTGT
AGAAATGTAAAGGGGAACGATGTTACATCACCCGAAGAAACTGACcccaa
aaattatgaaatcaCCATTAAACTTGAAGATGAGTCAAAACCTCAAGATG
ATAAGAATCAAAGTGTACAATTAAtggattttttggaaaatcgaaATTTA
GTAAATATTAACGATGGAACTAATTGTTTTGATCAGTTTTCACCGATTAA
GGAAATGAATTCACATTTCGGGGAGGAAATTACTATtaaatttgaagata
aattgtttcaaaaccatgaaaatgaaaatttacagGAATGTTTTGAGACT
GACAAGATCGAAAATCCAAACATTGACGAAATAacgaaaagttcgattaa
agaaCATCAAAGAACGATATATGATAAACCTTTTAAATNGAGACTGACAA
GATCGAAAATCCAAACATTGACGAAATAACGAAAAGTTCGGTTAAAGAAC
ATCAAAGAACGATATATGATAAACCTtttaaatgtcaagaatgtAGTAAA
TCTCTTGCTACAAAGAGAAATTTGTTGAGGCACCAAAGAACATTCCATCA
AGGCATAAAAGCCTTtcaatgtcaagaatgtggtaaatgtttcgcagaga
aaaagaaattaacTTCGCATCAAAGAACTGTTCATCAAGGTATAAAACCA
TTTTTGTGTCAAGA Run BLAST on NCBI protein sequence of TCONS_00041782-protein >TCONS_00041782-protein ID=TCONS_00041782-protein|Name=TCONS_00041782-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
MNSVNEEMKKEIDKEEVHGCDETNHNNLEIIIKLEDESIGYPDDAILEPL
QNHESELFNNSCRNVKGNDVTSPEETDPKNYEITIKLEDESKPQDDKNQS
VQLMDFLENRNLVNINDGTNCFDQFSPIKEMNSHFGEEITIKFEDKLFQN
HENENLQECFETDKIENPNIDEITKSSIKEHQRTIYDKPFKXRLTRSKIQ
TLTK Run BLAST on NCBI transcript from alignment at sc0003019:8772..11515- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041782 ID=TCONS_00041782|Name=TCONS_00041782|organism=Clytia hemisphaerica|type=transcript|length=2744bp|location=Sequence derived from alignment at sc0003019:8772..11515- (Clytia hemisphaerica)
ATTATGTTTAAAAAATGAATTCTGTGAATGAAGAAATGAAAAAAGAAATT
GACAAAGAAGAAGTTCATGGTTGTGATGAAACCAATCATAATAATTTGGA
AATTATTATCAAACTGGAAGATGAATCAATTGGATATCCAGACGACGCAA
TTTTGGAACCATTACAAAACCATGAAAGTGAATTATTTAATAATTCTTGT
AGAAATGTAAAGGGGAACGATGTTACATCACCCGAAGAAACTGACCCCAA
AAATTATGAAATCACCATTAAACTTGAAGATGAGTCAAAACCTCAAGATG
ATAAGAATCAAAGTGTACAATTAATGGATTTTTTGGAAAATCGAAATTTA
GTAAATATTAACGATGGAACTAATTGTTTTGATCAGTTTTCACCGATTAA
GGAAATGAATTCACATTTCGGGGAGGAAATTACTATTAAATTTGAAGATA
AATTGTTTCAAAACCATGAAAATGAAAATTTACAGGAATGTTTTGAGACT
GACAAGATCGAAAATCCAAACATTGACGAAATAACGAAAAGTTCGATTAA
AGAACATCAAAGAACGATATATGATAAACCTTTTAAATNGAGACTGACAA
GATCGAAAATCCAAACATTGACGAAATAACGAAAAGTTCGGTTAAAGAAC
ATCAAAGAACGATATATGATAAACCTTTTAAATGTCAAGAATGTAGTAAA
TCTCTTGCTACAAAGAGAAATTTGTTGAGGCACCAAAGAACATTCCATCA
AGGCATAAAAGCCTTTCAATGTCAAGAATGTGGTAAATGTTTCGCAGAGA
AAAAGAAATTAACTTCGCATCAAAGAACTGTTCATCAAGGTATAAAGCTT
TTTAAATGTCGAGAATGTGGTAAATGTTTTGGACGCAAGACAACCTTAAC
TTTGCATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC
CATTTACAAGTTATCTTAAGTTAAATCTTTTCAAACATAATAATTTCAAT
TCTTTCTTTTATCTTAGAGTATTTTGTATAAAAAATGAATTCTGTTAATT
AAGAAATGAAAAAAGAAATTGACAAAGAAGAAGTTCATGGTTGTGATGAA
ACCAATCATAATAATTTGGAAATTATTACCAAACTGGAAGATGAATCAAT
CGGATATCTAGACGACGAAATTTTGGAACCATTAAAAAACCATGAAAGTG
AGTAATTTAAAAATTCTTGTACAAATGTAAAGGGGAACAATTTAACCTCA
TCCGAAGAAACTGACCCCAAAAATTACGAAATCACCATTAAACTTGAAGA
TGAGTCAAGGCCTCAAGATTATAAGAATCAAAGTCTACAATTAATGGATA
TTTCGGAAAATAAAAATGCGGAAAATATTAACGATGGTACGAATTCTTTT
GATCAGTTCTCTGGAAATGAAGAAATTAATTAACCAATTTGGGTAGACTG
GAGTCGTTTATAATGCGTGTAATACTAATAATACCAATACTAATAATAAT
AATACGGGATTTAGTTTGTATAAACGACTGGAAGAATTCGGTNNNNAATA
ATAATACGGGATTTAGTTTGTATAAACGACTGGAAGAATTCGGTGTTCCA
GCCTTATAGATACCCCGGCTAGCTACGCAGAAACTTGCGTAGCGAGAAAT
CAATTTATCAAGCAATAACAAACTCTGAAAACAAAATAAACTCAAATGAA
AAACTTTCAATACACAAATCCACACACATGTTTTTCTCAAGAATTATTTT
GAGCGGGAAAAAATTATAATTGCAAATATTGANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTATTGACACTTTTCTTTTGTTTGGAGTTAGTGCACAAAGGTTTCTAG
ACGACTAAAATTGTTCCCTTTATTACTTTTTGCTTTATTTCTACTATGTA
TGAATTAGTCTGCTAGACTACAATTTGGGAGGAAATTGCTATGAAATTTG
AAAATGAATTGAAAAGCTTTCACAACCATGAAAATAAAATTTCACAGGAA
TTTTTTGAAGCTGATAAGATTGAAAATCCAAACATTGACGCCATAACGAA
TAGTTTGATTAAGGAACATCAAAGAAGGATACATGATAAACCTTTCAAAT
TTAATGAATGTGTCAAGTTTTTTACAATGAAAAGTAATTTGAAGGTGCAT
CAAAGAACAGTCCATGAAGGTATAAAACCATTTTTGTGTCAAGA Coding sequence (CDS) from alignment at sc0003019:8772..11515- >TCONS_00041782 ID=TCONS_00041782|Name=TCONS_00041782|organism=Clytia hemisphaerica|type=CDS|length=615bp|location=Sequence derived from alignment at sc0003019:8772..11515- (Clytia hemisphaerica)
ATGAATTCTGTGAATGAAGAAATGAAAAAAGAAATTGACAAAGAAGAAGT
TCATGGTTGTGATGAAACCAATCATAATAATTTGGAAATTATTATCAAAC
TGGAAGATGAATCAATTGGATATCCAGACGACGCAATTTTGGAACCATTA
CAAAACCATGAAAGTGAATTATTTAATAATTCTTGTAGAAATGTAAAGGG
GAACGATGTTACATCACCCGAAGAAACTGACCCCAAAAATTATGAAATCA
CCATTAAACTTGAAGATGAGTCAAAACCTCAAGATGATAAGAATCAAAGT
GTACAATTAATGGATTTTTTGGAAAATCGAAATTTAGTAAATATTAACGA
TGGAACTAATTGTTTTGATCAGTTTTCACCGATTAAGGAAATGAATTCAC
ATTTCGGGGAGGAAATTACTATTAAATTTGAAGATAAATTGTTTCAAAAC
CATGAAAATGAAAATTTACAGGAATGTTTTGAGACTGACAAGATCGAAAA
TCCAAACATTGACGAAATAACGAAAAGTTCGATTAAAGAACATCAAAGAA
CGATATATGATAAACCTTTTAAATNGAGACTGACAAGATCGAAAATCCAA
ACATTGACGAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041782-exon-sc0003019-1575043694:10677..11515 | TCONS_00041782-exon-sc0003019-1575043694:10677..11515 | Clytia hemisphaerica | exon |
| TCONS_00041782-exon-sc0003019-1575043694:8772..8796 | TCONS_00041782-exon-sc0003019-1575043694:8772..8796 | Clytia hemisphaerica | exon |
| TCONS_00041782-exon-sc0003019-1510915933:10677..11515 | TCONS_00041782-exon-sc0003019-1510915933:10677..11515 | Clytia hemisphaerica | exon |
| TCONS_00041782-exon-sc0003019-1510915933:8772..8796 | TCONS_00041782-exon-sc0003019-1510915933:8772..8796 | Clytia hemisphaerica | exon |
| TCONS_00041782-exon-sc0003019-1491911889:10677..11515 | TCONS_00041782-exon-sc0003019-1491911889:10677..11515 | Clytia hemisphaerica | exon |
| TCONS_00041782-exon-sc0003019-1491911889:8772..8796 | TCONS_00041782-exon-sc0003019-1491911889:8772..8796 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003019 | supercontig | sc0003019:8772..11515 - |
Blast
The following BLAST results are available for this feature:
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