TCONS_00041677 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041677
Unique NameTCONS_00041677
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2332

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041677 ID=TCONS_00041677|Name=TCONS_00041677|organism=Clytia hemisphaerica|type=transcript|length=2332bp
AAAACAGTACAAAGAAGGCATGATTGCACAACGGACCTCAATTAAGTTGA
GATGAGTGTCAGATCTTCAGTCTTTGTTTCCCAACCCCCAATTTGTTACT
GAAAAACTGATCATTAAGTTACATTATATACATGGTTTTACCCATTAAGT
TCAGATACCTTTTTGATCAAAAGAAATTAAACACCCTTTATtatgaaaac
ctgaaaaatttgTTAGTATGACATGGTTGATAACATTGCCTGGAAATATT
GGGGAAAATTAAACAATTCTTCAATTGCAGATTGGCATTGTAGGCAAATA
AATTTTATCTGCTGGTACCTTGTTTTGGTATGTTACTTTCTTCTCTAGTA
CCCACTACAAAACAAGACATACATCTAGTAACTGTAAATGTGGtcagttt
gttttattgtttcaGTGAATTACAAAGAATGCATGAACGCACAAAACGGA
CCTCGTGAAATAGTTGAGGCGAGTGTCAGGACTTCATTCTTTATATTGaa
gcaaattttttgaattaaaacagTACAAAGAAGGCATGATTGCACAACGG
ACCTCAAATAAGTTGAGATGAGTGTCAGATCTTCAGTCTTTGTTTCCCAA
CCCCCAATTTTTTACCGAAAAACTGATCATTAATTTACATTACACGGTTT
TTACCCATTAGGATCAGatacattttttatcaaaagaaattaaacACCCC
AATTGCAGATTGGTATGGTAGGCAAATATAAATTTTGCCTGCTGGTACGT
TGTTTTGGTATGTTACTCTTTTCTCTGGTACCCACTACAAAACAAGACAG
ATCTAGTAACTGTAAATGTGGtcagtttgttttattgtttcaGTGAATTA
CAAAGAATGCATGAACGCACAAAACGGACCTCGTNTTTTTGATCAAAAGA
AATTAAACACCCTTTATtatgaaaacctgaaaaatttgTTAGTATGACAT
GGTTGATAACATTGCCTGGAAATATTGGGGAAAATTAAACAATTCTTCAA
TTGCAGATTGGCATTGTAGGCAAAGTCTGCTATCTTACCTAATATGCATA
GTAAATTTTGCCTGCTGGTACGTTGTTTTGGTATGTTACTCTTTTCTCTG
ATACCCACTAATAAACAAGACATAAATCTTGTAACTGTAAATGTGGTCAG
TTTGTTTAACTGTTTCAGTGAATTACAAAGAATGCATGAACGCACAAAAC
GGACCTCGTGAAATAGTTGAGGCGAGTGTCAGGACTTCATTCTTTATATT
gaagcaattttttttaattaaaacagTACAAAGAAGGCATGATTGCACAA
CGGACCTCAATTAAGTTGAGATGAGTGTCAGATCTTCAGTCTTTGTTTCC
CAACTCCCAATTTTGTACCGAAAAACTGATCATTAATTTACAATAAGTGC
AGATACCTTTTTGATCAAAAGAAATTAAACACACTTTACTATGAAAACTA
CCTTAAAAAGGAATGAAATCACTCTCTGCAAAGATCAGGAGTGTGAATAT
GATTAAATACTTAGTGCGCAGCAAAACATACGGTTTTCATTTAAAGCTAc
gatatttagaattttttactGTTTGTAATGGTTTTTTCTATTGATTTTAG
AAGAACGACTAACAGCTTGGCCTGAATTgggctttttaaaaaaaaattta
tacaggcgtattgacgaactttttcagtaacccccctggaaattttgaat
aacaagttatcccctggaaattagggGGTAGACCCCTCTGGGAAGTGAAA
TCTTGTGAAAAAGGGGCTGGAAAACAACTATTGATGTCAGTTTATGAAga
gagaaccccctggaaaccttcAATAACCCCAATGAACAACCTTCAATGAa
caaaaaccccttggaaaTAGCCCATTTTTCCCGCATACATGACCCAAACT
GGCCGCCTATGTCCACAACATGTTTTTGAAAGcgaaaatgtaaaattttg
gtGGCCAAAGATTGGCCAATACAGTGGAACTGTATTGACTACATTGCAGA
ATTCTTAAACAATGAGAAAAGTCCTCAGAAGTCCTTTTTGAACTGCAAAA
ATATAACTGTGATTGTAATGCTTTTTAATCATTGGCATAGCAAGATCATA
GTGGAATCAGGGGAAATTTCACAAAGACGATATGAGATACAGTTCAAAAA
TATTACaaggaaaagaaatattaataaACTTACAACACTCCAACTGTTGA
TATCTTGTTTCTTTTACACAACAACTGCTTCTTTCTGTAAATCTCTGCTT
TTGTCAGCTTCCACTTTTCGCTCTGAATTTTAAATTCGTGAGAACTTTTC
GGCACATGTGCAGAAATGAAATATTATTATCC
Run BLAST on NCBI

transcript from alignment at sc0002965:11513..14301-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041677 ID=TCONS_00041677|Name=TCONS_00041677|organism=Clytia hemisphaerica|type=transcript|length=2789bp|location=Sequence derived from alignment at sc0002965:11513..14301- (Clytia hemisphaerica)
AAAACAGTACAAAGAAGGCATGATTGCACAACGGACCTCAATTAAGTTGA
GATGAGTGTCAGATCTTCAGTCTTTGTTTCCCAACCCCCAATTTGTTACT
GAAAAACTGATCATTAAGTTACATTATATACATGGTTTTACCCATTAAGT
TCAGATACCTTTTTGATCAAAAGAAATTAAACACCCTTTATTATGAAAAC
CTGAAAAATTTGTTAGTATGACATGGTTGATAACATTGCCTGGAAATATT
GGGGAAAATTAAACAATTCTTCAATTGCAGATTGGCATTGTAGGCAAAGT
CTGCTATCTTACCTAATATGCATAGTAAATTTTGCCTGCTGGTACGTTGT
TTTGGTATGTTACTCTTTTCTCTGATACCCACTAATAAACAAGACATAAA
TCTTGTAACTGTAAATGTGGTCAGTTTGTTTAATTGTTTCAGTGAATTAC
AAAGAATGCATGAACACACAAAACGGACCTCGTGAAATAGTTGAGGCGAG
TGTCAGGACTTCATTCTTTATATTGAAGCAATTTTTTTGAATTAAAACAG
TACAAAGAAGGCATGATTGCACAACGGACCTCAAATAAGTTGAGATGAGT
GTCAGATCTTCAGTCTTTGTTTCCCAACCCCCAATTTTTTACCGAAAAAC
TGATCATTAATTTACATTACACGGTTTTTACCCATTAGGTTCAGATACAT
TTTTGATAAAAGGAAATAAATACCCCAATTGCAGATTATTGGCATGGTAG
GCAAATAAATTTTATCTGCTGGTACCTTGTTTTGGTATGTTACTTTCTTC
TCTAGTACCCACTACAAAACAAGACATACATCTAGTAACTGTAAATGTGG
TCAGTTTGTTTTATTGTTTCAGTGAATTACAAAGAATGCATGAACGCACA
AAACGGACCTCGTGAAATAGTTGAGGCGAGTGTCAGGACTTCATTCTTTA
TATTGAAGCAAATTTTTTGAATTAAAACAGTACAAAGAAGGCATGATTGC
ACAACGGACCTCAAATAAGTTGAGATGAGTGTCAGATCTTCAGTCTTTGT
TTCCCAACCCCCAATTTTTTACCGAAAAACTGATCATTAATTTACATTAC
ACGGTTTTTACCCATTAGGATCAGATACATTTTTTATCAAAAGAAATTAA
ACACCCCAATTGCAGATTGGTATGGTAGGCAAATATAAATTTTGCCTGCT
GGTACGTTGTTTTGGTATGTTACTCTTTTCTCTGGTACCCACTACAAAAC
AAGACAGATCTAGTAACTGTAAATGTGGTCAGTTTGTTTTATTGTTTCAG
TGAATTACAAAGAATGCATGAACGCACAAAACGGACCTCGTNTTTTTGAT
CAAAAGAAATTAAACACCCTTTATTATGAAAACCTGAAAAATTTGTTAGT
ATGACATGGTTGATAACATTGCCTGGAAATATTGGGGAAAATTAAACAAT
TCTTCAATTGCAGATTGGCATTGTAGGCAAAGTCTGCTATCTTACCTAAT
ATGCATAGTAAATTTTGCCTGCTGGTACGTTGTTTTGGTATGTTACTCTT
TTCTCTGATACCCACTAATAAACAAGACATAAATCTTGTAACTGTAAATG
TGGTCAGTTTGTTTAACTGTTTCAGTGAATTACAAAGAATGCATGAACGC
ACAAAACGGACCTCGTGAAATAGTTGAGGCGAGTGTCAGGACTTCATTCT
TTATATTGAAGCAATTTTTTTTAATTAAAACAGTACAAAGAAGGCATGAT
TGCACAACGGACCTCAATTAAGTTGAGATGAGTGTCAGATCTTCAGTCTT
TGTTTCCCAACTCCCAATTTTGTACCGAAAAACTGATCATTAATTTACAA
TAAGTGCAGATACCTTTTTGATCAAAAGAAATTAAACACACTTTACTATG
AAAACTACCTTAAAAAGGAATGAAATCACTCTCTGCAAAGATCAGGAGTG
TGAATATGATTAAATACTTAGTGCGCAGCAAAACATACGGTTTTCATTTA
AAGCTACGATATTTAGAATTTTTTACTGTTTGTAATGGTTTTTTCTATTG
ATTTTAGAAGAACGACTAACAGCTTGGCCTGAATTGGGCTTTTTAAAAAA
AAATTTATACAGGCGTATTGACGAACTTTTTCAGTAACCCCCCTGGAAAT
TTTGAATAACAAGTTATCCCCTGGAAATTAGGGGGTAGACCCCTCTGGGA
AGTGAAATCTTGTGAAAAAGGGGCTGGAAAACAACTATTGATGTCAGTTT
ATGAAGAGAGAACCCCCTGGAAACCTTCAATAACCCCAATGAACAACCTT
CAATGAACAAAAACCCCTTGGAAATAGCCCATTTTTCCCGCATACATGAC
CCAAACTGGCCGCCTATGTCCACAACATGTTTTTGAAAGCGAAAATGTAA
AATTTTGGTGGCCAAAGATTGGCCAATACAGTGGAACTGTATTGACTACA
TTGCAGAATTCTTAAACAATGAGAAAAGTCCTCAGAAGTCCTTTTTGAAC
TGCAAAAATATAACTGTGATTGTAATGCTTTTTAATCATTGGCATAGCAA
GATCATAGTGGAATCAGGGGAAATTTCACAAAGACGATATGAGATACAGT
TCAAAAATATTACAAGGAAAAGAAATATTAATAAACTTACAACACTCCAA
CTGTTGATATCTTGTTTCTTTTACACAACAACTGCTTCTTTCTGTAAATC
TCTGCTTTTGTCAGCTTCCACTTTTCGCTCTGAATTTTAAATTCGTGAGA
ACTTTTCGGCACATGTGCAGAAATGAAATATTATTATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025605XLOC_025605Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041677-exon-sc0002965-1575043694:14009..14301TCONS_00041677-exon-sc0002965-1575043694:14009..14301Clytia hemisphaericaexon
TCONS_00041677-exon-sc0002965-1575043694:11513..13551TCONS_00041677-exon-sc0002965-1575043694:11513..13551Clytia hemisphaericaexon
TCONS_00041677-exon-sc0002965-1510915933:14009..14301TCONS_00041677-exon-sc0002965-1510915933:14009..14301Clytia hemisphaericaexon
TCONS_00041677-exon-sc0002965-1510915933:11513..13551TCONS_00041677-exon-sc0002965-1510915933:11513..13551Clytia hemisphaericaexon
TCONS_00041677-exon-sc0002965-1491911889:14009..14301TCONS_00041677-exon-sc0002965-1491911889:14009..14301Clytia hemisphaericaexon
TCONS_00041677-exon-sc0002965-1491911889:11513..13551TCONS_00041677-exon-sc0002965-1491911889:11513..13551Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002965supercontigsc0002965:11513..14301 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.0622859	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041677 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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