TCONS_00041672 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041672
Unique NameTCONS_00041672
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2367

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041672 ID=TCONS_00041672|Name=TCONS_00041672|organism=Clytia hemisphaerica|type=transcript|length=2367bp
GGATAATAATATTTCATTTCTGCACATGTGCCGAAAAGTTCTCACGAATT
TAAAATTCAGAGCGAAAAGTGGAAGCTGACAAAAGCAGAGATTTACAGAA
AGAAGCAGTTGTTGTGTAAAAGAAACAAGATATCAACAGTTGGAGTGTTG
TAAGTttattaatatttcttttccttGTAATATTTTTGAACTGTATCTCA
TATCGTCTTTGTGAAATTTCCCCTGATTCCACTATGATCTTGCTATGCCA
ATGATTAAAAAGCATTACAATCACAGTTATATTTTTGCAGTTCAAAAAGG
ACTTCTGAGGACTTTTCTCATTGTTTAAGAATTCTGCAATGTAGTCAATA
CAGTTCCACTGTATTGGCCAATCTTTGGCCaccaaaattttacattttcg
CTTTCAAAAACATGTTGTGGACATAGGCGGCCAGTTTGGGTCATGTATGC
GGGAAAAATGGGCTAtttccaaggggtttttgtTCATTGAAGGTTGTTCA
TTGGGGTTATTgaaggtttccagggggttctctcTTCATAAACTGACATC
AATAGTTGTTTTCCAGCCCCTTTTTCACAAGATTTCACTTCCCAGAGGGG
TCTACCccctaatttccaggggataacttgttattcaaaatttccagggg
ggttactgaaaaagttcgtcaatacgcctgtataaatttttttttaaaaa
gcccAATTCAGGCCAAGCTGTTAGTCGTTCTTCTAAAATCAATAGAAAAA
ACCATTACAAACagtaaaaaattctaaatatcgTAGCTTTAAATGAAAAC
CGTATGTTTTGCTGCGCACTAAGTATTTAATCATATTCACACTCCTGATC
TTTGCAGAGAGTGATTTCATTCCTTTTTAAGGTAGTTTTCATAGTAAAGT
GTGTTTAATTTCTTTTGATCAAAAAGGTATCTGCACTTATTGTAAATTAA
TGATCAGTTTTTCGGTACAAAATTGGGAGTTGGGAAACAAAGACTGAAGA
TCTGACACTCATCTCAACTTAATTGAGGTCCGTTGTGCAATCATGCCTTC
TTTGTActgttttaattaaaaaaaattgcttcAATATAAAGAATGAAGTC
CTGACACTCGCCTCAACTATTTCACGAGGTCCGTTTTGTGCGTTCATGCA
TTCTTTGTAATTCACtgaaacaataaaacaaactgaCCACATTTACAGTT
ACTAGATCTGTCTTGTTTTGTAGTGGGTACCAGAGAAAAGAGTAACATAC
CAAAACAACGTACCAGCAGGCAAAATTTATATTTGCCTACCATACCAATC
TGCAATTGGGGTgtttaatttcttttgataaaaaatgtatCTGATCCTAA
TGGGTAAAAACCGTGTAATGTAAATTAATGATCAGTTTTTCGGTAAAAAA
TTGGGGGTTGGGAAACAAAGACTGAAGATCTGACACTCATCTCAACTTAT
TTGAGGTCCGTTGTGCAATCATGCCTTCTTTGTActgttttaattcaaaa
aatttgcttCAATATAAAGAATGAAGTCCTGACACTCGCCTCAACTATTT
CACGAGGTCCGTTTTGTGCGTTCATGCATTCTTTGTAATTCACtgaaaca
ataaaacaaactgaCCACATTTACAGTTACTAGATGTATGTCTTGTTTTG
TAGTGGGTACTAGAGAAGAAAGTAACATACCAAAACAAGGTACCAGCAGA
TAAAATTTATTTGCCTACCATGCCAATAATCTGCAATTGGGGTATTTATT
TCCTTTTATCAAAAATGTATCTGAACCTAATGGGTAAAAACCGTGTAATG
TAAATTAATGATCAGTTTTTCGGTAAAAAATTGGGGGTTGGGAAACAAAG
ACTGAAGATCTGACACTCATCTCAACTTATTTGAGGTCCGTTGTGCAATC
ATGCCTTCTTTGTActgttttaattcaaaaaaattgctTCAATATAAAGA
ATGAAGTCCTGACACTCGCCTCAACTATTTCACGAGGTCCGTTGTGCAAT
CATGCCTTCTTTGTActgttttaattcaaaaaaattgctTCAATATAAAG
AATGAAGTCCTGACACTCGCCTCAACTATTTCACGAGGTCCGTTTTGTGC
GTTCATGCATTCTTTGTAATTCACTGAAACATAAAACAAACTGACCACAT
TTACAGTTACTAGATGTATGTCTTGTTTTGTAGTGGGTACTAGAGAAAAA
AGTAACATACCAAAACAACGTACGAGCAGACAAAATTTACTATGCATATT
AGGTAAAATAGCAGATCTTGCCTACCGTGCATTGGCACTTGCAGATTGCT
GCAATTGGggtatttatttctttttattgaacCTAATGGGTAAAAACCGT
GTAACGTAAATTAATGA
Run BLAST on NCBI

transcript from alignment at sc0002965:11513..15446+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041672 ID=TCONS_00041672|Name=TCONS_00041672|organism=Clytia hemisphaerica|type=transcript|length=3934bp|location=Sequence derived from alignment at sc0002965:11513..15446+ (Clytia hemisphaerica)
GGATAATAATATTTCATTTCTGCACATGTGCCGAAAAGTTCTCACGAATT
TAAAATTCAGAGCGAAAAGTGGAAGCTGACAAAAGCAGAGATTTACAGAA
AGAAGCAGTTGTTGTGTAAAAGAAACAAGATATCAACAGTTGGAGTGTTG
TAAGTttattaatatttcttttccttGTAATATTTTTGAACTGTATCTCA
TATCGTCTTTGTGAAATTTCCCCTGATTCCACTATGATCTTGCTATGCCA
ATGATTAAAAAGCATTACAATCACAGTTATATTTTTGCAGTTCAAAAAGG
ACTTCTGAGGACTTTTCTCATTGTTTAAGAATTCTGCAATGTAGTCAATA
CAGTTCCACTGTATTGGCCAATCTTTGGCCaccaaaattttacattttcg
CTTTCAAAAACATGTTGTGGACATAGGCGGCCAGTTTGGGTCATGTATGC
GGGAAAAATGGGCTAtttccaaggggtttttgtTCATTGAAGGTTGTTCA
TTGGGGTTATTgaaggtttccagggggttctctcTTCATAAACTGACATC
AATAGTTGTTTTCCAGCCCCTTTTTCACAAGATTTCACTTCCCAGAGGGG
TCTACCccctaatttccaggggataacttgttattcaaaatttccagggg
ggttactgaaaaagttcgtcaatacgcctgtataaatttttttttaaaaa
gcccAATTCAGGCCAAGCTGTTAGTCGTTCTTCTAAAATCAATAGAAAAA
ACCATTACAAACagtaaaaaattctaaatatcgTAGCTTTAAATGAAAAC
CGTATGTTTTGCTGCGCACTAAGTATTTAATCATATTCACACTCCTGATC
TTTGCAGAGAGTGATTTCATTCCTTTTTAAGGTAGTTTTCATAGTAAAGT
GTGTTTAATTTCTTTTGATCAAAAAGGTATCTGCACTTATTGTAAATTAA
TGATCAGTTTTTCGGTACAAAATTGGGAGTTGGGAAACAAAGACTGAAGA
TCTGACACTCATCTCAACTTAATTGAGGTCCGTTGTGCAATCATGCCTTC
TTTGTActgttttaattaaaaaaaattgcttcAATATAAAGAATGAAGTC
CTGACACTCGCCTCAACTATTTCACGAGGTCCGTTTTGTGCGTTCATGCA
TTCTTTGTAATTCACTGAAACAGTTAAACAAACTGACCACATTTACAGTT
ACAAGATTTATGTCTTGTTTATTAGTGGGTATCAGAGAAAAGAGTAACAT
ACCAAAACAACGTACCAGCAGGCAAAATTTACTATGCATATTAGGTAAGA
TAGCAGACTTTGCCTACAATGCCAATCTGCAATTGAAGAATTGTTTAATT
TTCCCCAATATTTCCAGGCAATGTTATCAACCATGTCATACTAAcaaatt
tttcaggttttcataATAAAGGGTGTTTAATTTCTTTTGATCAAAAANAC
GAGGTCCGTTTTGTGCGTTCATGCATTCTTTGTAATTCACtgaaacaata
aaacaaactgaCCACATTTACAGTTACTAGATCTGTCTTGTTTTGTAGTG
GGTACCAGAGAAAAGAGTAACATACCAAAACAACGTACCAGCAGGCAAAA
TTTATATTTGCCTACCATACCAATCTGCAATTGGGGTgtttaatttcttt
tgataaaaaatgtatCTGATCCTAATGGGTAAAAACCGTGTAATGTAAAT
TAATGATCAGTTTTTCGGTAAAAAATTGGGGGTTGGGAAACAAAGACTGA
AGATCTGACACTCATCTCAACTTATTTGAGGTCCGTTGTGCAATCATGCC
TTCTTTGTActgttttaattcaaaaaatttgcttCAATATAAAGAATGAA
GTCCTGACACTCGCCTCAACTATTTCACGAGGTCCGTTTTGTGCGTTCAT
GCATTCTTTGTAATTCACtgaaacaataaaacaaactgaCCACATTTACA
GTTACTAGATGTATGTCTTGTTTTGTAGTGGGTACTAGAGAAGAAAGTAA
CATACCAAAACAAGGTACCAGCAGATAAAATTTATTTGCCTACCATGCCA
ATAATCTGCAATTGGGGTATTTATTTCCTTTTATCAAAAATGTATCTGAA
CCTAATGGGTAAAAACCGTGTAATGTAAATTAATGATCAGTTTTTCGGTA
AAAAATTGGGGGTTGGGAAACAAAGACTGAAGATCTGACACTCATCTCAA
CTTATTTGAGGTCCGTTGTGCAATCATGCCTTCTTTGTActgttttaatt
caaaaaaattgctTCAATATAAAGAATGAAGTCCTGACACTCGCCTCAAC
TATTTCACGAGGTCCGTTTTGTGTGTTCATGCATTCTTTGTAATTCACTG
AAACAATTAAACAAACTGACCACATTTACAGTTACAAGATTTATGTCTTG
TTTATTAGTGGGTATCAGAGAAAAGAGTAACATACCAAAACAACGTACCA
GCAGGCAAAATTTACTATGCATATTAGGTAAGATAGCAGACTTTGCCTAC
AATGCCAATCTGCAATTGAAGAATTGTTTAATTTTCCCCAATATTTCCAG
GCAATGTTATCAACCATGTCATACTAAcaaatttttcaggttttcataAT
AAAGGGTGTTTAATTTCTTTTGATCAAAAAGGTATCTGAACTTAATGGGT
AAAACCATGTATATAATGTAACTTAATGATCAGTTTTTCAGTAACAAATT
GGGGGTTGGGAAACAAAGACTGAAGATCTGACACTCATCTCAACTTAATT
GAGGTCCGTTGTGCAATCATGCCTTCTTTGTACTGTTTTAANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAATTGCT
TCAATATAAAGAATGAAGTCCTGACACTCGCCTCAACTATTTCACGAGGT
CCGTTTTGTGCGTTCATGCATTCTTTGTAATTCACTGAAACATAAAACAA
ACTGACCACATTTACAGTTACTAGATGTATGTCTTGTTTTGTAGTGGGTA
CTAGAGAAAAAAGTAACATACCAAAACAACGTACGAGCAGACAAAATTTA
CTATGCATATTAGGTATAATAGCAGATCTTGCCTACCGTACATTGGCACT
TGCAGATTGCTGCAATTGGggtatttatttctttttattgaacCTAATGG
GTAAAAACCGTGTAACGTAAATTAATGATCAGTTTTTCGGTAAAAAAATT
GGGGGTTGGGAAACAAAGACCGAAGATCTGACACTCATCTCAACTTAATT
GAGGTCCGTTGTGCAATCATGCCTTCTTTGTActgttttaattcaaaaaa
attgctTCAATATAAAGAATGAAGTCCTGACACTCGCCTCAACTATTTCA
CGAGGTCCGTTTTGTGCGTTCATGCATTCTTTGTAATTCACTGAAACATA
AAACAAACTGACCACATTTACAGTTACTAGATGTATGTCTTGTTTTGTAG
TGGGTACTAGAGAAAAAAGTAACATACCAAAACAACGTACGAGCAGACAA
AATTTACTATGCATATTAGGTAAAATAGCAGATCTTGCCTACCGTGCATT
GGCACTTGCAGATTGCTGCAATTGGggtatttatttctttttattgaacC
TAATGGGTAAAAACCGTGTAACGTAAATTAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025604XLOC_025604Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041672-exon-sc0002965-1491911889:11513..12640TCONS_00041672-exon-sc0002965-1491911889:11513..12640Clytia hemisphaericaexon
TCONS_00041672-exon-sc0002965-1510915933:11513..12640TCONS_00041672-exon-sc0002965-1510915933:11513..12640Clytia hemisphaericaexon
TCONS_00041672-exon-sc0002965-1575043694:11513..12640TCONS_00041672-exon-sc0002965-1575043694:11513..12640Clytia hemisphaericaexon
TCONS_00041672-exon-sc0002965-1491911889:12966..13823TCONS_00041672-exon-sc0002965-1491911889:12966..13823Clytia hemisphaericaexon
TCONS_00041672-exon-sc0002965-1510915933:12966..13823TCONS_00041672-exon-sc0002965-1510915933:12966..13823Clytia hemisphaericaexon
TCONS_00041672-exon-sc0002965-1575043694:12966..13823TCONS_00041672-exon-sc0002965-1575043694:12966..13823Clytia hemisphaericaexon
TCONS_00041672-exon-sc0002965-1491911889:15066..15446TCONS_00041672-exon-sc0002965-1491911889:15066..15446Clytia hemisphaericaexon
TCONS_00041672-exon-sc0002965-1510915933:15066..15446TCONS_00041672-exon-sc0002965-1510915933:15066..15446Clytia hemisphaericaexon
TCONS_00041672-exon-sc0002965-1575043694:15066..15446TCONS_00041672-exon-sc0002965-1575043694:15066..15446Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002965supercontigsc0002965:11513..15446 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.454278	0.255186	0	0	0	0	0	0	0	0	0	0	0.311881	0.0970912	0	0	0	5.42229e-10	0	6.02178e-10	0.0934296	0.00386948	7.65925e-05	0	0	0	0.388579	0	2.63443e-05
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041672 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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