TCONS_00041392 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041392
Unique NameTCONS_00041392
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length818

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041392 ID=TCONS_00041392|Name=TCONS_00041392|organism=Clytia hemisphaerica|type=transcript|length=818bp
CAGAGGGATGTCGACATTTAACCTACTTACATTAATGTCAAAACGCCCAT
AATGATCATCCAACAGAAGGTAGACGTCCATTCAGCATTTAGCTTGTTAT
CCTATAGATTAGACATTATATTATTAAAGCCAAAGATGGAAGTAAGCTTT
CTTGGAAAGGAACTCAAGCTTGACAACGAAGAAGATGGTGAAGAAATTGC
AAACGCTATCAAAAATTGTAGAGACATGGAAACTCTAAAACTTCAAGGGA
ACACGCTTGGAGTTGGTGCTAGTAAGGTTATATCAGAAGCCTTGAAACAG
CAGAGTGCATTCAAGAAAGCATTATGGAGTGATATGTATACTGGAAGGCT
TCGTTCTGAAATTCCCAAGTCTTTGGAATTGCTTAGTGAGGGCATTATAA
CAGCTGGTGCTAAACTGACAGTCTTGGATTTGAGTGACAATGCATTTGGT
CCAGATGGAGTGGACGGAATCAAGAAGCTTTTACGCAGCGAATCATCTTA
TTTATTACACACTTTAAAACTGAATAACAATGGTTTGGGAATTGGGGGTG
GAAAGGTAAAAAAACTAATCCATCAAATTTTTGTATGACATAACCTAATT
TTTACAACCCAACTTTTACGactttcttttatcattttattatcTGGCat
ccgatgtagaaattttcttccgacacgctaaagctctaaaggtcgggaaa
attttcaacatctggaagaaatacattacgNtaccatcggagagaaatag
tagtCATCCATTGATGTGCCGACATAAGTTTAGCCCTCATTTTCGGGGCC
GTGCTGAACGCTCAAAAA
Run BLAST on NCBI

protein sequence of TCONS_00041392-protein

>TCONS_00041392-protein ID=TCONS_00041392-protein|Name=TCONS_00041392-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
MIIQQKVDVHSAFSLLSYRLDIILLKPKMEVSFLGKELKLDNEEDGEEIA
NAIKNCRDMETLKLQGNTLGVGASKVISEALKQQSAFKKALWSDMYTGRL
RSEIPKSLELLSEGIITAGAKLTVLDLSDNAFGPDGVDGIKKLLRSESSY
LLHTLKLNNNGLGIGGGKVKKLIHQIFV
Run BLAST on NCBI

transcript from alignment at sc0002843:5058..12021+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041392 ID=TCONS_00041392|Name=TCONS_00041392|organism=Clytia hemisphaerica|type=transcript|length=6964bp|location=Sequence derived from alignment at sc0002843:5058..12021+ (Clytia hemisphaerica)
CAGAGGGATGTCGACATTTAACCTACTTACATTAATGTCAAAACGCCCAT
AATGATCATCCAACAGAAGGCAAGTTAGTTGCAAGTTCTTTTTATTGAAA
TTTAGCCTTCTTTTATTTAGACAGTGGTTAATTAATTATCATTTTTAATG
ACTGAAACGAAAATATTGATATATCATGTAATAATTATGCATTGCTTCTG
TTTAATTTGATAGGTAGATTTTTATCTTTTTCAAGCACTTTCGGAAAGCA
ACTTTTTTATTCCATTGAGCATATCTTTTGATCTAATGAATCGAATTTAA
TAGATGACCCATCAAAATTTAAGTTTATCTTTCTTCTTTCCAATGAAATA
AGAATGGTTCTTTTAAGATTTTCCTTGTGTAACTAACCCATACTTAAAAA
CAAATATTAAGCACCTTGAAGTAGAGAGTCACAGCTGTATTCCTTAAGAA
CATACCAGGCTATTTCTTTACATTTGTGGTTGGGTTCCAGGACTTAAGGA
ATATGGAGGATTTCAAAAATTGAGGTTTTTGGTCGGAAAGTGAAAAAAAG
GTTCCAAATTTAGCTACCAACCGACCAACCGACCAACCAACCCATTTTTT
AAAGCTTCTTCTTCTTCTTGGTTCCTACCAAGCAATCAATTAGGCCTGGC
CTAGGCTAGAGGGAGAAATACTTCTTTAATAGACCGATTCAACATAATCC
AGTTAAATACAATCTTCAAGCAAACCTCAAGTAAGCAAGCAAGCTGTCTT
TTCTTAACTGAGCTTTtgtgagcataaactttcgtaAATGTCCCTCTCAA
GACTTTCCGACAAAGGTATTTAATTTGGGAAATGAATATTTCTCAcgatt
ggcttggtatttttttttgatttttgcacaagtaaaaggaaaaaatctgg
agcccaattttcaaataaataatCTTTTGGGctaaaagtgcctaaaaatt
tgtaaaaatgggaTTATTTggagttttttcagattttttttcataatgac
AGGAGGCAATGTTCTTTCAAAAATGGCTGAAGCCgttttttccagaaaat
tttttttggctgtagaaatcagattttcttatttggggaaattccctttt
gtcatttttagggaaaatgagcatttctcgcaAATGCCTTGATTATTATT
TTCTCATGTTTTAGTTTGCATTTTCTTACTAATGCTGCCATTTTTTCTAT
TCTCTTATTACATTTACCTTCCAGGTAGACGTCCATTCAGCATTTAGCTT
GTTATCCTATAGATTAGACATTATATTATTAAAGCCAAAGATGGAAGTAA
GCTTTCTTGGAAAGGAACTCAAGCTTGACAACGAAGAAGATGGTAAGTTT
ATTGTTTATGTTATGTTTTCCAGAATTATTTTCAAGCAGGGAAATTTGtt
actttgtaaaaaaaataaggaTTGGAATTATAGCTTCACTGATGTCAGGT
TTaggcaaaaaaatgtattttgaaataaaaaaatgcaacttATGGATATC
TAGTAAATCTACCCAGAAATTCAAGTCAGTAAAGGACCTCTCAAAGAGGT
TGCAATTAGACGGGCAGGCTACCAACCTGCAGACCTGATTTGGCCGACTT
ATTATTCTGGATTATCTTTGCGCATTGGGTTTACACTTAGTAAACATTAA
AATTTACTAAACATTCGTGACTTCTCAAGCGGTTTAAAGTACCTGAAAAT
CAGACCGGTCTTGGTCCGGTATTACGATTGGTCTAGTAGTGGTCAAACTT
TTTGTTTTGTACGGCCTTCAGACCTTCTCAAAATATGATCTCTAACAGTC
CTGGCCGCTTCTAGACGCTCATGGCTGCTTGTTAGACCAGTCCTGACCGC
TCGTTAGACCGGTCCGCTCGTTAGACCAGTCCAGGCCGCTCGTTAGACCG
GTCCAGGCCGCTAGTTAGTGATTTTTAGGAACGattacatcaaaaaattc
atGTAAAAGGATGTCGACCAGACGATCAGGGCCAGTCTGGGACCGGACGC
TTCGCAGCGGCAGCTAAATTAACTAGACTCGTAGTGgccttttggtaaat
ttttaccGTTCATTTACCGGCCCTAAAAAGACCGTCTAAAGACCGGTccc
attttcaggtactttaaatcgcttggggGGGGGGTCACATTTGTTAATAA
GTgattatcaaaaaataaaaaaataaattttatgctGGCGCAATCTTGAG
GCCATGCAGTGTATTGCAGATTTTATTTAAATACACATTCTagaaaaact
ttgtttttatatcTAGTTGTTAGTAATAAGTATAATTATCTTTTGGGTAA
ATTAGAATTGTGAAAATGTGTTAATTGTTGGAAATTGGTCGGTATTAATT
TTGTTTCTAATTGTGTGAATTTTTAAGTCAGATTTTCTAAACTGAATTCG
TGTTCGTGTCTACATTTCGAAATTATTTCTGACCTCTTGTTTAATTAATC
CCCTtagtttttgtaaaatataatttCGAACTTTTCCTGTAACCAAAGTA
GACATCGCTTTGTGATGTTGCTGTGGGCAAGTACCCTTTTCTAAGTAAAC
cattttttctttggaattccagatataatgttgaaattgttgtcttgttt
ttgtattttttctaaGCCAATGTAAACTTTGTCAGGTACAGAGGGGATGC
ATTTGCAAATAATGCTTTTTTCTCTGTATTTTTCTTCTAAAagacaattt
tgtttttgtctgAAACAGACAAACATGACGTTTTTAATTCAAAACCTGAA
ATAGAGCTTCTTTTATCTAGGAGCTGTGTaggcattttttgaaaagtcaa
TATCGCTGAATAATATAAAAGCCCCACAGCCACACCAAATGCTAATATTA
CTATATACTAGCCTATAACGATAAGAAGAATATGAATGTTAACATTTTTA
CGACAGGGAACTAAACACTGCCAATCAAAGTGTTGTGAGCTccatgtttt
attttcaaatagtGCTAAGGTTTCTTTATTAGATATTGGTATTTTTTGGG
TTTTGCGATGTAATTTGCGATTAAGCGGGATCAAATTTACATATACTTAC
CTTACATAAATGGTTTAGTAGAATAAAATACAACataaaatgtttagaaa
aattTAAGTGCTTACTGAGAGAGTGGCAAACAAAAGGGGAAGCTTTTAAT
AGACAAAaaagattttagttttttttatttactagaAAGAGATTGGACTT
TTTGAtaatagtgaggtctgttagcacatacaaacgtaagaatactacag
atggtgataaaagcatgaaatttggcacagatgatccctTGATTTTAAAC
AACACCAAAGTAACACCAATTTTGCCACATgaccacctgccagatgacgt
tatcaggtggctgggcaaagaattatttttttgaaaatattcaaaatctg
atggttccagcggaaagagcatgaaaatgCTGATGAAAACTGAGGTATAA
agcatgccttgaaaatcttcttatcaaaagttatggaggttgaaagtttN
ACTGAGGTATAAagcatgccttgaaaatcttcttatcaaaagttatggag
gttgaaagttttgtgatgcAGCCTACTTTTTTCAAGAAAGAAGGAAAGGA
TAAAAGAGGAAACAAAGAGTTTTATTAAAATTCCTTGCTTTTTCTCTCTG
CCTTTCAATTCTTTTaactttgcttaaaaaattccCTCcacatttttaat
ttcaaaatacatttttcatCGCCAAAACCTGAATTTGCTTCCCAGTACAA
AGCTATAATTCAAACCCTGGAATTATTCCAATCGATGGTTAGGAATCAAG
TATGGTGATAGAGGTTATTTTGCATCAAGGGAGACCAGGGGTGTGCCAAT
CATTTTATAACCAGATTTGATATATCtcaatttgaaaagatttttttaat
gataGTCGTGAAAGATATCAATGTCTGTAAAAGTAGGAGGTGAATTTGTA
AGTTTAAAAGCcagttttaaatgttttctgcAATTACTAAGATATCTTTG
CCAGCAGGGATCAGAAAAGGCCAATTAACAGGAACATTCATTTGCTTAAT
CATTATATGTATTCACTTTTTCCTCTCTTTATATGAAGAGTAGGCTAAAT
AAGAGGTAACTTAGCGGTTAACCATCTCTAATTTAGGGCCCATAGTAAAC
GCCTATTCACCTTCAGTCATTTGCAAGGGCCACTGTACCTTTAGATTAAA
AAACTTGAATCTATTTTACTTCTGTGCTTTTAATGCAATGCGCAAGACTC
AAAATAACTCTATTTCATTATGGTTTTAAAGGTGAAGAAATTGCAAACGC
TATCAAAAATTGTAGAGACATGGAAACTCTAAAACTTCAAGGGAACACGC
TTGGAGTTGGTGCTAGTAAGGTTATATCAGAAGCCTTGAAACAGCAGAGT
GCATTCAAGGTGAGTgagtaatttttttgtaaatttgttgtAAATTTTTA
GTGATAGAATCCAGTACTACACTGTCAGTAACCTAAAAAATCAACTAATT
CAGCTTCCTTTGTTGAAATATAAAGTATATTCAAGCGCAGACAATTCACT
TTCCCATCGAATTCAGGCTCGACTTTATATCTCAtgcaatttgaagaaaa
aaagttaaaaagccAACTTTATTAAAATTCATCTTGTAAACCTTTAATTT
CATGCTCGCCTGAATGCTTATGTTGtgcttttatcaaaaatggTAAATCT
GTACATGGGGCGCCAAAAGGGtttttaataccaacttttttttagatACC
AACATTTTTAACGcaaaaatcattttataatatTACTAAAGTTgttcaat
aatttcttttacCATTCAAGTGTAAAGGGGCCCTTAAAATATTTCTGCGG
AAGAAATGGGAAGACAGTTATCAGGAAGTAGGCCTGGAATTTCGAATTAT
GAGACTTTGATTCATACTTTTCAGTTAGGAATTTTNCTGCGGAAGAAATG
GGAAGACAGTTATCAGGAAGTAGGCCTGGAATTTCGAATTATGAGACTTT
GATTCATACTTTTCAGTTAGGAATTTTAGGATTACGAGGATTGTGACATC
ATAAATATAGAAAATATGTCATTTCCTATCACAAATtcgattttgaaaat
aaaagatttccagattttttctttaaaaaaagtttcccAGTTACGTAACT
CTGATTTCTattccaaatttttcaaaaggtttttgAGTTACGTTACGTTA
GTTATAGTAAGCTGATTGAACAGGCGATTGCATGAGTGTTttagaggttt
tgtttttaaagaatgatatcgtttgcttactcatcaattttaattcacaa
gctttttcacattggattgacacggatgtggagcaagattgatcagaacg
agaaaaagaaaaacatttttttgcttattatcAGCATATTATAACattag
caagacactgtcctgatatgaaatatNCTTTTTTGCTTATTATCAGCAta
ttataacaatagcaagacactgtcctgatatgaaatatgtgtctgatatg
aaacggaaacacttatgtaaaaagaaaacctttaagattATGTCTACATT
GCACTGGTATTGGAAAAAAGAAGTTGGTGTcggaaaaaaaaagttgatat
cgAAAAAAAGTTTGGCGCGCCATAAATTTGAGCCTGTTTAAAATTACAGT
ACCGTAGCAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTTaaacaaaccccccccccccccccgcca
atatgaaaatgcttcctacggcactgaattAGAAGATAAGGAGGGGAAAA
GACAAAccttttcctttattttttaattaaagtaAAGGGTGTCTGGTTAA
TTAAAAAACTTTAACTTTTTTAGAAAGCATTATGGAGTGATATGTATACT
GGAAGGCTTCGTTCTGAAATTCCCAAGTCTTTGGTGAGTATCACctaggt
ttttttattttaatagaagTTGCTCACTCTGTCAAGATCAAAAGGCTACA
ATATGCTTCTTAAATCTTTAAATCTATACCTGATATGGCTGTCTGTAtgt
ctgggggtgttttttgatttttgaagcctggGCATagtttttctccaaaa
tgaGGCTAAGACTTTGGGGCAAGCCTGAAACTTggttgttccttgggtga
atatctgggagtgttttttcatttttcaaatgattTCATTTTGCAGAGCC
TGGGCACTAATCTTTTGGTTTATTTTGCTACAGTTGGACCAATGAATAAT
TTGGAGCTACTGAAGTTTAGCCCATTATGTTGCGCAGGTTCGATCTCGAT
ATGTAAATTACAGAAAAGATTTAACACATTTGCAGAATACTGTAATTGGG
TTTTCCCTTTGCTCACAGTTGCTCAcaaattttaattgaaattaCCAGTC
AAGTTATATTTTCAACAATAGGAATTGCTTAGTGAGGGCATTATAACAGC
TGGTGCTAAACTGACAGTCTTGGATTTGAGTGACAATGCATTTGGTCCAG
ATGGAGTGGACGGAATCAAGAAGCTTTTACGCAGCGAATCATCTTATTTA
TTACACACTTTAAAACTGAATAACAATGGTTTGGGAATTGGGGGTGGAAA
GGTAAAAAAACTAATCCATCAAATTTTTGTATGACATAACCTAATTTTTA
CAACCCAACTTTTACGactttcttttatcattttattatcTGGCatccga
tgtagaaattttcttccgacacgctaaagctctaaaggtcgggaaaattt
tcaacatctggaagaaatacattacgNtaccatcggagagaaatagtagt
CATCCATTGATGTGCCGACATAAGTTTAGCCCTCATTTTCGGGGCCGTGC
TGAACGCTCAAAAA

Coding sequence (CDS) from alignment at sc0002843:5058..12021+

>TCONS_00041392 ID=TCONS_00041392|Name=TCONS_00041392|organism=Clytia hemisphaerica|type=CDS|length=2685bp|location=Sequence derived from alignment at sc0002843:5058..12021+ (Clytia hemisphaerica)
ATGATCATCCAACAGAAGGTAGACGTCCATTCAGCATTTAGCTTGTTATC
CTATAGATTAGACATTATATTATTAAAGCCAAAGATGGAAGTAAGCTTTC
TTGGAAAGGAACTCAAGCTTGACAACGAAGAAGATGGTGAAGAAATTGCA
AACGCTATCAAAAATTGTAGAGACATGGAAACTCTAAAACTTCAAGGGAA
CACGCTTGGAGTTGGTGCTAGTAAGGTTATATCAGAAGCCTTGAAACAGC
AGAGTGCATTCAAGAAAGCATTATGGAGTGATATGTATACTGGAAGGCTT
CGTTCTGAAATTCCCAAGTCTTTGGAATTGCTTAGTGAGGGCATTATAAC
AGCTGGTGCTAAACTGACAGTCTTGGATTTGAGTGACAATGCATTTGGTC
CAGATGGAGTGGACGGAATCAAGAAGCTTTTACGCAGCGAATCATCTTAT
TTATTACACACTTTAAAACTGAATAACAATGGTTTGGGAATTGGGGGTGG
AAAGGTAAAAAAACTAATCCATCAAATTTTTGTATGAATGATCATCCAAC
AGAAGGTAGACGTCCATTCAGCATTTAGCTTGTTATCCTATAGATTAGAC
ATTATATTATTAAAGCCAAAGATGGAAGTAAGCTTTCTTGGAAAGGAACT
CAAGCTTGACAACGAAGAAGATGGTGAAGAAATTGCAAACGCTATCAAAA
ATTGTAGAGACATGGAAACTCTAAAACTTCAAGGGAACACGCTTGGAGTT
GGTGCTAGTAAGGTTATATCAGAAGCCTTGAAACAGCAGAGTGCATTCAA
GAAAGCATTATGGAGTGATATGTATACTGGAAGGCTTCGTTCTGAAATTC
CCAAGTCTTTGGAATTGCTTAGTGAGGGCATTATAACAGCTGGTGCTAAA
CTGACAGTCTTGGATTTGAGTGACAATGCATTTGGTCCAGATGGAGTGGA
CGGAATCAAGAAGCTTTTACGCAGCGAATCATCTTATTTATTACACACTT
TAAAACTGAATAACAATGGTTTGGGAATTGGGGGTGGAAAGGTAAAAAAA
CTAATCCATCAAATTTTTGTATGAATGATCATCCAACAGAAGGTAGACGT
CCATTCAGCATTTAGCTTGTTATCCTATAGATTAGACATTATATTATTAA
AGCCAAAGATGGAAGTAAGCTTTCTTGGAAAGGAACTCAAGCTTGACAAC
GAAGAAGATGGTGAAGAAATTGCAAACGCTATCAAAAATTGTAGAGACAT
GGAAACTCTAAAACTTCAAGGGAACACGCTTGGAGTTGGTGCTAGTAAGG
TTATATCAGAAGCCTTGAAACAGCAGAGTGCATTCAAGAAAGCATTATGG
AGTGATATGTATACTGGAAGGCTTCGTTCTGAAATTCCCAAGTCTTTGGA
ATTGCTTAGTGAGGGCATTATAACAGCTGGTGCTAAACTGACAGTCTTGG
ATTTGAGTGACAATGCATTTGGTCCAGATGGAGTGGACGGAATCAAGAAG
CTTTTACGCAGCGAATCATCTTATTTATTACACACTTTAAAACTGAATAA
CAATGGTTTGGGAATTGGGGGTGGAAAGGTAAAAAAACTAATCCATCAAA
TTTTTGTATGAATGATCATCCAACAGAAGGTAGACGTCCATTCAGCATTT
AGCTTGTTATCCTATAGATTAGACATTATATTATTAAAGCCAAAGATGGA
AGTAAGCTTTCTTGGAAAGGAACTCAAGCTTGACAACGAAGAAGATGGTG
AAGAAATTGCAAACGCTATCAAAAATTGTAGAGACATGGAAACTCTAAAA
CTTCAAGGGAACACGCTTGGAGTTGGTGCTAGTAAGGTTATATCAGAAGC
CTTGAAACAGCAGAGTGCATTCAAGAAAGCATTATGGAGTGATATGTATA
CTGGAAGGCTTCGTTCTGAAATTCCCAAGTCTTTGGAATTGCTTAGTGAG
GGCATTATAACAGCTGGTGCTAAACTGACAGTCTTGGATTTGAGTGACAA
TGCATTTGGTCCAGATGGAGTGGACGGAATCAAGAAGCTTTTACGCAGCG
AATCATCTTATTTATTACACACTTTAAAACTGAATAACAATGGTTTGGGA
ATTGGGGGTGGAAAGGTAAAAAAACTAATCCATCAAATTTTTGTATGAAT
GATCATCCAACAGAAGGTAGACGTCCATTCAGCATTTAGCTTGTTATCCT
ATAGATTAGACATTATATTATTAAAGCCAAAGATGGAAGTAAGCTTTCTT
GGAAAGGAACTCAAGCTTGACAACGAAGAAGATGGTGAAGAAATTGCAAA
CGCTATCAAAAATTGTAGAGACATGGAAACTCTAAAACTTCAAGGGAACA
CGCTTGGAGTTGGTGCTAGTAAGGTTATATCAGAAGCCTTGAAACAGCAG
AGTGCATTCAAGAAAGCATTATGGAGTGATATGTATACTGGAAGGCTTCG
TTCTGAAATTCCCAAGTCTTTGGAATTGCTTAGTGAGGGCATTATAACAG
CTGGTGCTAAACTGACAGTCTTGGATTTGAGTGACAATGCATTTGGTCCA
GATGGAGTGGACGGAATCAAGAAGCTTTTACGCAGCGAATCATCTTATTT
ATTACACACTTTAAAACTGAATAACAATGGTTTGGGAATTGGGGGTGGAA
AGGTAAAAAAACTAATCCATCAAATTTTTGTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025367XLOC_025367Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041392-exon-sc0002843-1491911889:5058..5126TCONS_00041392-exon-sc0002843-1491911889:5058..5126Clytia hemisphaericaexon
TCONS_00041392-exon-sc0002843-1510915933:5058..5126TCONS_00041392-exon-sc0002843-1510915933:5058..5126Clytia hemisphaericaexon
TCONS_00041392-exon-sc0002843-1575043694:5058..5126TCONS_00041392-exon-sc0002843-1575043694:5058..5126Clytia hemisphaericaexon
TCONS_00041392-exon-sc0002843-1491911889:6282..6399TCONS_00041392-exon-sc0002843-1491911889:6282..6399Clytia hemisphaericaexon
TCONS_00041392-exon-sc0002843-1510915933:6282..6399TCONS_00041392-exon-sc0002843-1510915933:6282..6399Clytia hemisphaericaexon
TCONS_00041392-exon-sc0002843-1575043694:6282..6399TCONS_00041392-exon-sc0002843-1575043694:6282..6399Clytia hemisphaericaexon
TCONS_00041392-exon-sc0002843-1491911889:9339..9466TCONS_00041392-exon-sc0002843-1491911889:9339..9466Clytia hemisphaericaexon
TCONS_00041392-exon-sc0002843-1510915933:9339..9466TCONS_00041392-exon-sc0002843-1510915933:9339..9466Clytia hemisphaericaexon
TCONS_00041392-exon-sc0002843-1575043694:9339..9466TCONS_00041392-exon-sc0002843-1575043694:9339..9466Clytia hemisphaericaexon
TCONS_00041392-exon-sc0002843-1491911889:11031..11090TCONS_00041392-exon-sc0002843-1491911889:11031..11090Clytia hemisphaericaexon
TCONS_00041392-exon-sc0002843-1510915933:11031..11090TCONS_00041392-exon-sc0002843-1510915933:11031..11090Clytia hemisphaericaexon
TCONS_00041392-exon-sc0002843-1575043694:11031..11090TCONS_00041392-exon-sc0002843-1575043694:11031..11090Clytia hemisphaericaexon
TCONS_00041392-exon-sc0002843-1491911889:11579..12021TCONS_00041392-exon-sc0002843-1491911889:11579..12021Clytia hemisphaericaexon
TCONS_00041392-exon-sc0002843-1510915933:11579..12021TCONS_00041392-exon-sc0002843-1510915933:11579..12021Clytia hemisphaericaexon
TCONS_00041392-exon-sc0002843-1575043694:11579..12021TCONS_00041392-exon-sc0002843-1575043694:11579..12021Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041392-proteinTCONS_00041392-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002843supercontigsc0002843:5058..12021 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.4255	17.2726	14.1705	12.8487	74.6271	43.6734	17.7664	15.2707	21.3278	24.724	7.92945	10.4388	8.92408	8.51737	11.6141	15.7009	29.2982	29.5128	3.60888	4.85902	8.07762	12.9736	33.0783	26.5538	6.66104	7.57616	10.5455	8.88795	19.6021	19.6415
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00041392 vs. Swiss-Prot (Human)
Match: RAGP1 (Ran GTPase-activating protein 1 OS=Homo sapiens GN=RANGAP1 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 5.691e-37
Identity = 65/124 (52.42%), Postives = 94/124 (75.81%), Query Frame = 1 
Query:  139 EVSFLGKELKLDNEEDGEEIANAIKNCRDMETLKLQGNTLGVGASKVISEALKQQSAFKKALWSDMYTGRLRSEIPKSLELLSEGIITAGAKLTVLDLSDNAFGPDGVDGIKKLLRSESSYLLH 510
            ++SF GK LKL+  ED +++   I++   +E L+L+GNT+GV A++VI++AL+++S  K+  WSDM+TGRLR+EIP +L  L EG+ITAGA+L  LDLSDNAFGPDGV G + LL+S + + L 
Sbjct:   22 QLSFKGKSLKLNTAEDAKDVIKEIEDFDSLEALRLEGNTVGVEAARVIAKALEKKSELKRCHWSDMFTGRLRTEIPPALISLGEGLITAGAQLVELDLSDNAFGPDGVQGFEALLKSSACFTLQ 145
The following BLAST results are available for this feature:
BLAST of TCONS_00041392 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAGP15.691e-3752.42Ran GTPase-activating protein 1 OS=Homo sapiens GN... [more]
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