TCONS_00041392-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00041392-protein
Unique NameTCONS_00041392-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length178

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00041392-protein ID=TCONS_00041392-protein|Name=TCONS_00041392-protein|organism=Clytia hemisphaerica|type=polypeptide|length=178bp
MIIQQKVDVHSAFSLLSYRLDIILLKPKMEVSFLGKELKLDNEEDGEEIA
NAIKNCRDMETLKLQGNTLGVGASKVISEALKQQSAFKKALWSDMYTGRL
RSEIPKSLELLSEGIITAGAKLTVLDLSDNAFGPDGVDGIKKLLRSESSY
LLHTLKLNNNGLGIGGGKVKKLIHQIFV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_025367XLOC_025367Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00041392TCONS_00041392Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00368LRR_RI_2coord: 149..175
e-value: 4.1
score: 12.8
coord: 56..83
e-value: 0.66
score: 18.4
coord: 119..146
e-value: 0.0047
score: 26.1
NoneNo IPR availableGENE3D3.40.50.2000coord: 105..173
e-value: 2.5E-6
score: 26.8
coord: 39..91
e-value: 1.2E-4
score: 21.4
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 44..166
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 121..138
e-value: 0.0049
score: 16.7

Blast
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BLAST of TCONS_00041392-protein vs. Swiss-Prot (Human)
Match: RAGP1 (Ran GTPase-activating protein 1 OS=Homo sapiens GN=RANGAP1 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 4.566e-48
Identity = 77/140 (55.00%), Postives = 108/140 (77.14%), Query Frame = 0 
Query:   30 EVSFLGKELKLDNEEDGEEIANAIKNCRDMETLKLQGNTLGVGASKVISEALKQQSAFKKALWSDMYTGRLRSEIPKSLELLSEGIITAGAKLTVLDLSDNAFGPDGVDGIKKLLRSESSYLLHTLKLNNNGLGIGGGKV 169
            ++SF GK LKL+  ED +++   I++   +E L+L+GNT+GV A++VI++AL+++S  K+  WSDM+TGRLR+EIP +L  L EG+ITAGA+L  LDLSDNAFGPDGV G + LL+S + + L  LKLNN G+GIGGGK+
Sbjct:   22 QLSFKGKSLKLNTAEDAKDVIKEIEDFDSLEALRLEGNTVGVEAARVIAKALEKKSELKRCHWSDMFTGRLRTEIPPALISLGEGLITAGAQLVELDLSDNAFGPDGVQGFEALLKSSACFTLQELKLNNCGMGIGGGKI 161
The following BLAST results are available for this feature:
BLAST of TCONS_00041392-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAGP14.566e-4855.00Ran GTPase-activating protein 1 OS=Homo sapiens GN... [more]
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