TCONS_00041194 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041194
Unique NameTCONS_00041194
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1531

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041194 ID=TCONS_00041194|Name=TCONS_00041194|organism=Clytia hemisphaerica|type=transcript|length=1531bp
CGCTTGGTTCGCGCTCGCGctatatttttcgtgttttcaTGTGTTATGTA
ACATGagatatcgaaagtgaaagtgtttTTCACTACCAAGATTCTAGTTT
TCAGCtcgcttttttttcaaaatcaatccTCAATCGATCCTCGAACGCAG
AAAACTAAAAAGATCAATACTTTTTAAATTGAATGTGGAGGCAGTTTATT
TTATTTGCTAACTGCTCAAGTAGTTCAATctcaaacaaaacaacaaacac
aAAAATGGCAGAAGTGTCTTCAGTGATTGAATTCAATGTGAATATGACTT
GTGGTAATTGTGAAAATTCAATTCGTGACTCCCTTTCAAAATTACGAGGT
ATAACCTCGGTCACTATCAACATTCAACAACAGCAAGTTATCGTCACAAC
AACCTACCCTTCAGAAGTAGTTCAAAAAGCTATCGAATCCACTGGAATGC
TTGCTATTGTCAAAGGACAAGGACTAGATATTTCTAATCACATGGGTGCT
GCTATATCTATTTTGAAACGTAATCAAAGGACACTTGGATTAGTACGTTT
TACACAGATCACAGAAGAGACTTGTGTTATTGATGGGTCATTCAACGGAT
TAAATGCTGGAAAGTATGGACTTCATATTCACGAGTTTGGTGATTTGTCT
GCGTTCTGTGAAAGCACTGGTGACGATTACAATCCAACAGAAAGTTGCCA
TGGTGACCGAGAAAACACATCTAGACATGCAGGAGACATGGGAAATGTAG
AAGTCGGTGAAAAAGGTTCGGCTGTTTTTCGTTACCAAGACAATATGATT
AAGGTTTGGGACATCATTGGGCGCTCTGTTGTGCTtcatgaaaaagaaga
tgacTTCTCGAATGACCCACATGGAAATGCTGGAAAAGGattagcCTGTG
GAATCATTGCTCGTTCAGCTggtttatttcaaaacaaaaagatggtATGC
TCGTGTTCTGGTAAAACCATTTGGCAAGAAAGAGAAGATGCTAAGAATGA
AATGGGATGATAATAAAAACATTGTTGTGTTTCATCAAATGACCGAACCA
CAAGCAACAATATTTGGCAAGGAATAGAAATTGCTTGAGTTTAACGGAAG
TTTAACAAAGCTAAGAACACCAACGTACCCTCGCGTATTACGAATCCAAT
GTCTCGAAATTGAATATCGACTTATATGAAGATGGATTTTTGTTTCATCA
GGTTTTATTATTATGACTTGAGAATATGGATAAGGCGCTACATTTGATTT
TTCGTGATGAATGGGTTTCCATTATAAAATCGGCAAGATTTTCAGTCTGG
AAATGAAATGAGGGAAATATTATGTACTGCTTTGAAATTATGTCAATTGC
AGTTATTCAAATTTATTCGATTTATTGTACCGGAATTCAATGCTAGAATT
ATTGACGTACAGTATTGTGTTATGGAAGAAATAGTGTGGAGAGACATTTT
CATAATTACAGCTATCATTTATTAATTTGCGTAATTTATTACTTTTTTGA
TATAAAGAAACATTATCACTGAAAATCTTTG
Run BLAST on NCBI

protein sequence of TCONS_00041194-protein

>TCONS_00041194-protein ID=TCONS_00041194-protein|Name=TCONS_00041194-protein|organism=Clytia hemisphaerica|type=polypeptide|length=275bp
MWRQFILFANCSSSSISNKTTNTKMAEVSSVIEFNVNMTCGNCENSIRDS
LSKLRGITSVTINIQQQQVIVTTTYPSEVVQKAIESTGMLAIVKGQGLDI
SNHMGAAISILKRNQRTLGLVRFTQITEETCVIDGSFNGLNAGKYGLHIH
EFGDLSAFCESTGDDYNPTESCHGDRENTSRHAGDMGNVEVGEKGSAVFR
YQDNMIKVWDIIGRSVVLHEKEDDFSNDPHGNAGKGLACGIIARSAGLFQ
NKKMVCSCSGKTIWQEREDAKNEMG
Run BLAST on NCBI

transcript from alignment at sc0002744:7621..16194-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041194 ID=TCONS_00041194|Name=TCONS_00041194|organism=Clytia hemisphaerica|type=transcript|length=8574bp|location=Sequence derived from alignment at sc0002744:7621..16194- (Clytia hemisphaerica)
CGCTTGGTTCGCGCTCGCGCTATATTTTTCGTGTTTTCATGTGTTATGTA
ACATGAGATATCGAAAGTGAAAGTGTTTTTCACTACCAAGATTCTAGTTT
TCAGCTCGCTTTTTTTTCAAAATCAATCCTCAATCGATCCTCGAACGCAG
AAAACTAAAAAGATCAATACTTTTTAAATTGAATGTGGAGGCAGTTTATT
TTATTTGCTAACTGCTCAAGTAGTTCAATCTCAAACAAAACAACAAACAC
AAAAATGGCAGAAGTGTCTTCAGTGGTAAGACCTTTTTTGCGTCTCCCGC
GCCCCCTCCCCTTTGTCATATTTTTTACCGTGAGATCGAGTAACTTGCAT
CAGGGGAGGCTAACATGCATAGCCATCAAATGACTGACCAATAAAAACAG
CAAAATTTCAAAACCATTAAACCTGCAGCTCTACTCTACCATTTTTGTTT
TGATTTAACTTTGTATTTTAATTTAATGACCAGCTGGGTCATTCATTTGA
GGGCTATGCATGTTAGCCTCCACTGATGCAAGTTACCCGATCTCACGGTA
CCAGTTAAAATCAATAAGATCAATAATCGAATCAAGAAAAGATTGATATG
TGATTGCTTCTCCAACCCTCTGCTGAACATATCTGCACATCACAATATGT
TAGAGTGTCTTCGCGAGGCGAAGTTGACAGCTATGTCATACATTTCTAGT
CATTCTAGTCTGAGCTTCCATAAGGCAGTTTGATGCGTTTTTTTCGTATA
TACTTTTTCAGTTCCAAATTCTCATCCTCCTTGACCTTGCACATGCATCA
TTTTTTCGATTTCTATTTCTATTTGGTTGAGTCGCAGGAGGCTTTGAGGC
TCTTTCGCAGCTATAGGCGCTTTCAATTAATTAGCGCCCGTCAGCACCTT
GAACTGACTACCCAATTCCCCTCACACGTCATGGGTTGATCCAGGCTAGG
GTTCATTCACTTGCTAAGTGAGCCGCTGCGAGTAGGAATAGACCTTTTTT
TAAAGAGGCAGCCATGTTGAATAATTATGTACTCCAGCATAAAAACAAAT
GATACAGCCATGCATAATTTTTAAAATATGCACGATGATACAGTAATTAT
ACATGGCTGTATCATTGTTTTTATGCTGGAGTACATAATTATTCAACATG
GCTGTCTCTTTAAAAAAAGGTCTATTGAACCTCAGTTGCCTGCTGTGCAG
CAACCAAACCAAGGTCAATGACCACTACCGTAAGTTGGTCTAATATCGAC
ATCCCTCGTCTAATTCAGACACCCTTCTTTAGAGAAAGGAATAGTATGAA
AGCTTGAATCACTGATTGAAAAAGGATTATTCCTCTCTGACCACTAAACA
AAGAAAAACAGTTTCAACCTTCCTATAAATTTCAGCTGATAAAAAGGGTG
TCAGAATTAGAGGAGGGTTGTCGACATTAGACCAAGTTACGATATACTAC
AGCCCTTAAGCATAGGTTCAGCCCCCCTTACTTTTGGGGGAGGGGCTAAG
GAATATTTTGGCCTTTAAAGAGCCTGGGGGCTAAAAAAATTACCAAAATA
TTTGGGGGGACCTAGATTGTTGGGGAGAGCCTAGATGATCTGACTGAGGG
GCTGTTCAGCTAAATTCAAAAGATCTCTTATTTTACTATTAAATCAAATA
TAGAAAGCAAAAGATTTGTAAACATAAATATTAAATCAAGTAAAATTTAG
TTTTCATTTATCAGTACTGTACTCGCATATGTTTTTATTGACTTCTCTCT
ACGGGGGCGGGAGATCAATGTTTTTGTTTTTGTTTATCTTGGGACCTGAA
GTGTTAGGGGACCTAGCACAAGGCAATTTTTTGGGGGGAGCTAAATTGTT
GGGGGGACCTTACTTTGCTTGGGGGGAGCTAGAAACCTGGCTGAAGCTAT
GTTAAGATATTAATTGTTTCACACCATTGCCTCCATTCGTTGCATGTTGC
TAACCTGATCTTTCATTTGACATTTGATTTCTCTCTTCCATTCACTTTTC
ATTGTCTCCTCTTATTCTTTTAGTTGTCTCCTCTTATTCTTTTCGTTGTC
TTCCATTATTGCCCTCCTGGTTGATCAAGTTCCCAAAGAACTTCCCCTTT
TGTTAGTTGAATAATTTGGTTCTTCTCCATTTCTTTTGTGAAATACTTGG
TTTTTGATTCACAACCACATTTAATGTATAGCCTTTCCGCTGTTCCATTC
CCTTGAGGTTCCTCCCTGCTGCTTTAACTGTCTCTTTGCTTCTCCAGTCA
TAATATCATTAACGTACACCATACTTCTTACCTCTACTCTACTCCTGGTG
CAACACTAGCACTGTGTTGGTCTCATCCACTTGGTTCCCTTTCTCATAGG
CCTGAACTGTTCAGTTGTTTCATTATTTCTGTTCTCCAGGCCAAAAGCTC
ATGGAATGAAAAATATATAGCTGTGACTGTCAGAATAACCTGAACATTGA
TCAATTTTTTAGTGCCTAATTTTCATCTTTCATTGTTTTTGTTTTATGTC
TGTACGTGTCAGGCTGGAAAATACAGATAAGTCAATAGGTTATTTGATAT
TCTTGGACTTTGCAACCTAATTATTACGTATTTTCTGTTTTTTTATATTG
ATTTTGATTTTGACCCAATAAACAATTCATTTCATTGACATCTATTAATC
TTTATCTCTCGTCAGCTATTTTATATCAGGCAATTGGTGATTAGGCACCG
TTTTTAATGAAATCAAAAAATTAAAAAGGGGTGCATTTACAGTAACAATT
CAGTCTGATTATAATTGTCTAATTATGTCAATTATTTGTGACAGATAGGA
ATAAAATAATGGATTTCTTTAAATAGTATCTTAAACTAAAAATTTTTGGC
AGAAAGAAAATTTGGTGGATTTGACATATTTAATAAAATTTTGCCAAATT
AAGTTCCTTAAAACTCCTGCCTAATTACCTTTACCTGGGTAAACCCATGC
CACATTCGAGTGGGATTGGCTAGTCAGGCGATCATTGAAAGTGTCCATAG
TTGCGAGAATGGGTCCTCAGAGCCTCCTGCAACTCAACCAAATAGAAGTT
AGAAATAGAAATAATTCAAATCGCTTTGTTCATTCCCCGAATTCGTGCTA
AAGGGGCCATTCAAAAAGTACTCTCGGGTACCTAATAGCAGGGGGGTTTA
GAATAAGCAGGGGGGTTGGAAAAAATCTCAAAAATTGATAAGCAGGGGGG
GAATAAAAATGTTAAGGGTGGAAAATTTTCAAAAAGGAGGCTAATACAGC
AGAATTAGGGCAAAAGAGGGAACTTTCAAAAAAAATTTCCCAAAAACCAA
TAAGCAAGGGGGTTGGAATAAGAATGTCCTGGGTGGAAAATTTTCGAAAA
ATTAATTAGCGGGCCCCCCGGCTATTAGGTACCAGAGAGTACATACACTC
TGAGGGGGGAGGGGAAGTCCTTCGAAAAGCGTACGAAGACGTACGTGGGG
GAGGGGGTTCATCAAGAACTGTACGTTTGCTTTGCAATCTTTTTCAAGCT
ATTTTTTCTAACTTTCTATTTGAAAAATCAAAATATAAGAAACCTAACCC
TTCTTATTTGTGTTATCTATATATCAACCTATGATAATCTTTCAGTTTCT
TTAACTTTGATCTTGTCTTGAAAAATTTATATCATTAAAATCAAGAGCAA
ACCTGCGCCAGTCAATTTCTTTTATAATTAATAATTTTAGATTTTTCTCC
TAAAGAGTAAGCGGAAAAGCGTGATGTTTTAAACATCTAGCACTGAAGAT
GGTTTTACCGAAAAACTTTTGCTAAGAATAAAATAAAACTTGTTGTTTTT
CTTACTATGTTAAAGATTGATTTTGTTAAAAAGATAGATAACATTATCAT
AATTTTCTTTCAGATTGAATTCAATGTGAATATGACTTGTGGTAATTGTG
AAAATTCAATTCGTGACTCCCTTTCAAAATTACGAGGTAAAACCTAGTGT
TGAGAAACAATGGACTATTTTAGAGACTATCTGTGCCTCTTGATGTGTGT
AGTGTAGTAATTCTTTATCATCTAGGACAGAGTTTTACACTTTTCAAAAA
ATAAGTTTTGACCTCAAAGATGATTAGGCACCAGGGCCCGGTTGTTCAAA
AGTTGATTAGATTGAATCCCAATTACTGCTAATCGCGATTAGATTTCGAT
TACTTTAACCGGATTAAATTTTGCGAGCTAAAAAAATCGTGAAATTTTCT
GGATTTAATTTCGCGAGTCAGAGTTTTGAAATATTTCGCGTGGATTTAAT
TTCGCGAATAAGCCAGAAAACAGCTGATAGCCATTTTTTGCCATAAATGG
AGACTTGGAACTAGTTTCTCTGCCAAAAATACAATTTTAAAAGTTTTGTG
GTGGATTTAATTTCGCGAATCAGGAATCTCACGCGTGTTCGCGAGTTCTA
ATTTCGCGAAAATGGCAAAAATTTGCGAAATCGCGAAATTTAATCTCGCG
AAAATTAATCCGATTAAAGTAATTAATCCTGACAATTAACGGCAATTGAC
TTCCGTTGCTCAAACAACAGATTAAGTAACCGTGGACATTTTTCCTGTGT
TTTCAAAAATCTTGACATCACTTTTCGAATGTTTCCAAAACATTCGAAAA
TCTTTATTTGCTTGAATTTCTCACTTCGATGCAGCGACTTCACTTGTTTT
GTAAGAAAAAGCTTCTTAATCCTTGCTAATCCTGGGTCAGAGCAGGATTA
AAATTTGGCTGATTTAATCGGAATTTAATCTAGATTAAAGCCTAATTTTT
TTCAAACAACCAATTTTTTGTGCTAATTGGCGCTAATCGAGATTTAATCA
AAAATTAAGCTAATCGGCCGCTAATCCACTTTTGAGCTACTGGGCCCAGT
GGTTCAAATTTAGAAATGGATACCTAAAAATTCTAAGTAAATATATATCT
TCTTCTGAAATATTGAAAATCGAAATACTTCAAGATGTTTAAAGTTTTGG
CCCTAAAAATTCTTCCATAGGTAACCATAGTTTTTTCCTAATTCTAGGTA
TAACCTCGGTCACTATCAACATTCAACAACAGCAAGTTATCGTCACAACA
ACCTACCCTTCAGAAGTAGTTCAAAAAGCTATCGAATCCACTGGAATGCT
TGCTATTGTCAAAGGACAAGGACTAGGTACAAGAACAAAATATCGTAAAC
AATTCTTTTTACAAATACTCATGTATCAGTTTTTGGGTGTTATTTAAAAA
TGTCTAGGGCATAAGGCAATTAAGTAAGATTCATTATATTGAAAAAGTTT
TCCAATTGCTCTTTTAAAGTTGGTCATAAATGTCCTTCTGGCTTGAAAGG
ATTTCCTGAATTTGGAATATTTTCCTAACAGCTTGGGTCAAGAGGCTCCT
TTCAATGAAAAAAAAAACAAATTACACATTTTTTTCCCATTTCAGATATT
TCTAATCACATGGGTGCTGCTATATCTATTTTGAAACGTAATCAAAGGAC
ACTTGGATTAGTACGTTTTACACAGGTAATATTTCCCAGCTCATATTTCT
GAAAAATTAATGTTAGTAGTCTTCAATCTTTTGGTTGTTTTACAAAACCT
TTTTTTAATTCAACTTATAAACATCACTTCTCGTTTCATATACACGCTTT
TTTTATAAGAATAGTGTACTTTGGATGAGGGTCAAGTATTCTTAAGAAAG
TACCAAAATTGAGGGTGAAATATTCTTAACGTATTTTTANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCTTTTTTATAAACATGAGAAATGATCAATT
TGAGAGTTTTGGACTTTTGAGTGAACATTTGGGTTAAAATTACATTTCTT
CCTCAAAGCTTTAATTTATCTCTAACAAAGGAAGCATGAAGCAGCAATTT
TCACCCTGATATTCTTATATAAGATATTCTTATAAAAAAAAGCGTGTAAT
TCAAGCTCACCTCACCTCACCTCACGAAGTCTTCATGTATCAAAACAGGA
GGGATTTCTACCCATTCGCAAAAAATCTTTTCCCGATAGGAAAACAACAC
CATGAAATTTCATCCTCATCGGAAAACAATGCAACTCTAACCTCACTTGA
ATAAACTATGAGAATACCCATTTTTGCGTTTAGTTCCTTTATCTTATTTC
TAACGGAGTCTACTGCGCAAATCCTTTATTTATTTCAAATATTAGGTTAG
ATTGATTTATTTTGTGTATATTAAGTTTTATGTTTAATTGATTGTAGATC
ACAGAAGAGACTTGTGTTATTGATGGGTCATTCAACGGATTAAATGCTGG
AAAGTATGGACTTCATATTCACGAGTTTGGTGATTTGTCTGCGTTCTGTG
AAAGGTAAATTATAGCCCGGATTTACGAATTTAAAAACATCTGATGATGA
ATACTTGTTCTTATGCGAAGCGTCAAGACAGGAGAAATGTTAGATCTTTT
TCTTGTACACAATAATATGGTACGTTTTTAACGGCTGTTTACCTGGGATG
TCATTTATTATAATGTCTAAAAAACTCTTTAACCTTAAGATGATATTTAT
TGAGCATAGTATTTATTTTATAGCACTGGTGACGATTACAATCCAACAGA
AAGTTGCCATGGTGACCGAGAAAACACATCTAGAGTAAAGTTTCTTTTGA
ATGTTGAAAATCCATAATATTAGAAGATCCAATTCCTTAGAATTCCTTAG
TTTGCTGTGAGCTGAATGAATGCAAGCTTTGATCACAGTGTGGTGAGAGA
ACCACCTCATTCTCTGATATTTGCTAATGTTCCCTTACACAGTGTGGTGA
GAGAACCACCTCATTGTCCGATATTTGCTAATGTTCCCTTAAGAAAACCT
TAGTGTCTTTACGAAGACGAATTTTACATGATGATGGCCTAAATTTAATT
CCAACTCTAATTTAATAGGATAAATTTTCACAAGATTTGATTTTATAAAT
CATTTTTGCTAATTTTTACCATTTTTTTCGAAAATAGAACTCACCAATTT
GCATGAGATCAGCGTAAATATGCTAATTTTGACGTTTACAGAATCATTTT
CAACAAATTTTTGGCTGTTTCCCGCTGAAATTTTTTAAAATGCTTAATGC
AAAAGAAAATTTTGCGAAATTAAGAATTTCATAGGAGGTTCACACTTTGA
AATGAAATATATATGATGTAATTTGTTGTTTTATAATAGCATGCAGGAGA
CATGGGAAATGTAGAAGTCGGTGAAAAAGGTTCGGCTGTTTTTCGTTACC
AAGACAATATGATTAAGGTATTTACACTAAAAATAGTCACTTTCCTAGAA
CTTAATGTGTAAATTAAGTTTATACTCATTTCAATACCTACCCATATTTT
GAAGAATCTGAAAAAGTGCCGGTATTTTTTGAGTCCCTAACTCTTGTTTT
AAAGTCTCGAAATATTGCAAGCAACGTTCAATTCTGTTATAATTAAGAGA
GATCAAGTTCAATTTCCTCTTTCAAAATTCATGTTTGTTTAAAGGTTTGG
GACATCATTGGGCGCTCTGTTGTGCTTCATGAAAAAGAAGATGACTTCTC
GAATGACCCACATGGAAATGCTGGAAAAGGGTGAGCTATTGTATTTTGTG
TATTAACCAAGGAGACAATGTAAACATTTTCTAAGAACGAGAAACGGCGT
CTGATGTGCTTTTAAAGGAAGAAAACTCATTTTGTGTATTTTTGAAGGAA
AAAATCAAAAGATCTTTCGTAGATTTTAAAGTAATATTTCCGATATCTTG
AAATTTGATAACTTTTCACGGATACCAATCCCATTTTCAAAAGAAAAAGG
TTGAAAATTTTGTGTATCTTTCAAAAAAACTTTGACTTCTACTTGAAGAA
AATGATAGACAATGTTCATAGTACCAGTGTTTCTAACAGTTAGGTTTTGT
TAATAAATATTTTGACTTTATTTTTTTTTCAGATTAGCCTGTGGAATCAT
TGCTCGTTCAGCTGGTTTATTTCAAAACAAAAAGATGGTATGCTCGTGTT
CTGGTAAAACCATTTGGCAAGAAAGAGAAGATGCTAAGAATGAAATGGGA
TGATAATAAAAACATTGTTGTGTTTCATCAAATGACCGAACCACAAGCAA
CAATATTTGGCAAGGAATAGAAATTGCTTGAGTTTAACGGAAGTTTAACA
AAGCTAAGAACACCAACGTACCCTCGCGTATTACGAATCCAATGTCTCGA
AATTGAATATCGACTTATATGAAGATGGATTTTTGTTTCATCAGGTTTTA
TTATTATGACTTGAGAATATGGATAAGGCGCTACATTTGATTTTTCGTGA
TGAATGGGTTTCCATTATAAAATCGGCAAGATTTTCAGTCTGGAAATGAA
ATGAGGGAAATATTATGTACTGCTTTGAAATTATGTCAATTGCAGTTATT
CAAATTTATTCGATTTATTGTACCGGAATTCAATGCTAGAATTATTGACG
TACAGTATTGTGTTATGGAAGAAATAGTGTGGAGAGACATTTTCATAATT
ACAGCTATCATTTATTAATTTGCGTAATTTATTACTTTTTTGATATAAAG
AAACATTATCACTGAAAATCTTTG

Coding sequence (CDS) from alignment at sc0002744:7621..16194-

>TCONS_00041194 ID=TCONS_00041194|Name=TCONS_00041194|organism=Clytia hemisphaerica|type=CDS|length=7452bp|location=Sequence derived from alignment at sc0002744:7621..16194- (Clytia hemisphaerica)
ATTAGCCTGTGGAATCATTGCTCGTTCAGCTGGTTTATTTCAAAACAAAA
AGATGGTATGCTCGTGTTCTGGTAAAACCATTTGGCAAGAAAGAGAAGAT
GCTAAGAATGAAATGGGATGAGTTTGGGACATCATTGGGCGCTCTGTTGT
GCTTCATGAAAAAGAAGATGACTTCTCGAATGACCCACATGGAAATGCTG
GAAAAGGCATGCAGGAGACATGGGAAATGTAGAAGTCGGTGAAAAAGGTT
CGGCTGTTTTTCGTTACCAAGACAATATGATTAAGCACTGGTGACGATTA
CAATCCAACAGAAAGTTGCCATGGTGACCGAGAAAACACATCTAGAATCA
CAGAAGAGACTTGTGTTATTGATGGGTCATTCAACGGATTAAATGCTGGA
AAGTATGGACTTCATATTCACGAGTTTGGTGATTTGTCTGCGTTCTGTGA
AAGATATTTCTAATCACATGGGTGCTGCTATATCTATTTTGAAACGTAAT
CAAAGGACACTTGGATTAGTACGTTTTACACAGGTATAACCTCGGTCACT
ATCAACATTCAACAACAGCAAGTTATCGTCACAACAACCTACCCTTCAGA
AGTAGTTCAAAAAGCTATCGAATCCACTGGAATGCTTGCTATTGTCAAAG
GACAAGGACTAGATTGAATTCAATGTGAATATGACTTGTGGTAATTGTGA
AAATTCAATTCGTGACTCCCTTTCAAAATTACGAGATGTGGAGGCAGTTT
ATTTTATTTGCTAACTGCTCAAGTAGTTCAATCTCAAACAAAACAACAAA
CACAAAAATGGCAGAAGTGTCTTCAGTGATTAGCCTGTGGAATCATTGCT
CGTTCAGCTGGTTTATTTCAAAACAAAAAGATGGTATGCTCGTGTTCTGG
TAAAACCATTTGGCAAGAAAGAGAAGATGCTAAGAATGAAATGGGATGAG
TTTGGGACATCATTGGGCGCTCTGTTGTGCTTCATGAAAAAGAAGATGAC
TTCTCGAATGACCCACATGGAAATGCTGGAAAAGGCATGCAGGAGACATG
GGAAATGTAGAAGTCGGTGAAAAAGGTTCGGCTGTTTTTCGTTACCAAGA
CAATATGATTAAGCACTGGTGACGATTACAATCCAACAGAAAGTTGCCAT
GGTGACCGAGAAAACACATCTAGAATCACAGAAGAGACTTGTGTTATTGA
TGGGTCATTCAACGGATTAAATGCTGGAAAGTATGGACTTCATATTCACG
AGTTTGGTGATTTGTCTGCGTTCTGTGAAAGATATTTCTAATCACATGGG
TGCTGCTATATCTATTTTGAAACGTAATCAAAGGACACTTGGATTAGTAC
GTTTTACACAGGTATAACCTCGGTCACTATCAACATTCAACAACAGCAAG
TTATCGTCACAACAACCTACCCTTCAGAAGTAGTTCAAAAAGCTATCGAA
TCCACTGGAATGCTTGCTATTGTCAAAGGACAAGGACTAGATTGAATTCA
ATGTGAATATGACTTGTGGTAATTGTGAAAATTCAATTCGTGACTCCCTT
TCAAAATTACGAGATGTGGAGGCAGTTTATTTTATTTGCTAACTGCTCAA
GTAGTTCAATCTCAAACAAAACAACAAACACAAAAATGGCAGAAGTGTCT
TCAGTGATTAGCCTGTGGAATCATTGCTCGTTCAGCTGGTTTATTTCAAA
ACAAAAAGATGGTATGCTCGTGTTCTGGTAAAACCATTTGGCAAGAAAGA
GAAGATGCTAAGAATGAAATGGGATGAGTTTGGGACATCATTGGGCGCTC
TGTTGTGCTTCATGAAAAAGAAGATGACTTCTCGAATGACCCACATGGAA
ATGCTGGAAAAGGCATGCAGGAGACATGGGAAATGTAGAAGTCGGTGAAA
AAGGTTCGGCTGTTTTTCGTTACCAAGACAATATGATTAAGCACTGGTGA
CGATTACAATCCAACAGAAAGTTGCCATGGTGACCGAGAAAACACATCTA
GAATCACAGAAGAGACTTGTGTTATTGATGGGTCATTCAACGGATTAAAT
GCTGGAAAGTATGGACTTCATATTCACGAGTTTGGTGATTTGTCTGCGTT
CTGTGAAAGATATTTCTAATCACATGGGTGCTGCTATATCTATTTTGAAA
CGTAATCAAAGGACACTTGGATTAGTACGTTTTACACAGGTATAACCTCG
GTCACTATCAACATTCAACAACAGCAAGTTATCGTCACAACAACCTACCC
TTCAGAAGTAGTTCAAAAAGCTATCGAATCCACTGGAATGCTTGCTATTG
TCAAAGGACAAGGACTAGATTGAATTCAATGTGAATATGACTTGTGGTAA
TTGTGAAAATTCAATTCGTGACTCCCTTTCAAAATTACGAGATGTGGAGG
CAGTTTATTTTATTTGCTAACTGCTCAAGTAGTTCAATCTCAAACAAAAC
AACAAACACAAAAATGGCAGAAGTGTCTTCAGTGATTAGCCTGTGGAATC
ATTGCTCGTTCAGCTGGTTTATTTCAAAACAAAAAGATGGTATGCTCGTG
TTCTGGTAAAACCATTTGGCAAGAAAGAGAAGATGCTAAGAATGAAATGG
GATGAGTTTGGGACATCATTGGGCGCTCTGTTGTGCTTCATGAAAAAGAA
GATGACTTCTCGAATGACCCACATGGAAATGCTGGAAAAGGCATGCAGGA
GACATGGGAAATGTAGAAGTCGGTGAAAAAGGTTCGGCTGTTTTTCGTTA
CCAAGACAATATGATTAAGCACTGGTGACGATTACAATCCAACAGAAAGT
TGCCATGGTGACCGAGAAAACACATCTAGAATCACAGAAGAGACTTGTGT
TATTGATGGGTCATTCAACGGATTAAATGCTGGAAAGTATGGACTTCATA
TTCACGAGTTTGGTGATTTGTCTGCGTTCTGTGAAAGATATTTCTAATCA
CATGGGTGCTGCTATATCTATTTTGAAACGTAATCAAAGGACACTTGGAT
TAGTACGTTTTACACAGGTATAACCTCGGTCACTATCAACATTCAACAAC
AGCAAGTTATCGTCACAACAACCTACCCTTCAGAAGTAGTTCAAAAAGCT
ATCGAATCCACTGGAATGCTTGCTATTGTCAAAGGACAAGGACTAGATTG
AATTCAATGTGAATATGACTTGTGGTAATTGTGAAAATTCAATTCGTGAC
TCCCTTTCAAAATTACGAGATGTGGAGGCAGTTTATTTTATTTGCTAACT
GCTCAAGTAGTTCAATCTCAAACAAAACAACAAACACAAAAATGGCAGAA
GTGTCTTCAGTGATTAGCCTGTGGAATCATTGCTCGTTCAGCTGGTTTAT
TTCAAAACAAAAAGATGGTATGCTCGTGTTCTGGTAAAACCATTTGGCAA
GAAAGAGAAGATGCTAAGAATGAAATGGGATGAGTTTGGGACATCATTGG
GCGCTCTGTTGTGCTTCATGAAAAAGAAGATGACTTCTCGAATGACCCAC
ATGGAAATGCTGGAAAAGGCATGCAGGAGACATGGGAAATGTAGAAGTCG
GTGAAAAAGGTTCGGCTGTTTTTCGTTACCAAGACAATATGATTAAGCAC
TGGTGACGATTACAATCCAACAGAAAGTTGCCATGGTGACCGAGAAAACA
CATCTAGAATCACAGAAGAGACTTGTGTTATTGATGGGTCATTCAACGGA
TTAAATGCTGGAAAGTATGGACTTCATATTCACGAGTTTGGTGATTTGTC
TGCGTTCTGTGAAAGATATTTCTAATCACATGGGTGCTGCTATATCTATT
TTGAAACGTAATCAAAGGACACTTGGATTAGTACGTTTTACACAGGTATA
ACCTCGGTCACTATCAACATTCAACAACAGCAAGTTATCGTCACAACAAC
CTACCCTTCAGAAGTAGTTCAAAAAGCTATCGAATCCACTGGAATGCTTG
CTATTGTCAAAGGACAAGGACTAGATTGAATTCAATGTGAATATGACTTG
TGGTAATTGTGAAAATTCAATTCGTGACTCCCTTTCAAAATTACGAGATG
TGGAGGCAGTTTATTTTATTTGCTAACTGCTCAAGTAGTTCAATCTCAAA
CAAAACAACAAACACAAAAATGGCAGAAGTGTCTTCAGTGATTAGCCTGT
GGAATCATTGCTCGTTCAGCTGGTTTATTTCAAAACAAAAAGATGGTATG
CTCGTGTTCTGGTAAAACCATTTGGCAAGAAAGAGAAGATGCTAAGAATG
AAATGGGATGAGTTTGGGACATCATTGGGCGCTCTGTTGTGCTTCATGAA
AAAGAAGATGACTTCTCGAATGACCCACATGGAAATGCTGGAAAAGGCAT
GCAGGAGACATGGGAAATGTAGAAGTCGGTGAAAAAGGTTCGGCTGTTTT
TCGTTACCAAGACAATATGATTAAGCACTGGTGACGATTACAATCCAACA
GAAAGTTGCCATGGTGACCGAGAAAACACATCTAGAATCACAGAAGAGAC
TTGTGTTATTGATGGGTCATTCAACGGATTAAATGCTGGAAAGTATGGAC
TTCATATTCACGAGTTTGGTGATTTGTCTGCGTTCTGTGAAAGATATTTC
TAATCACATGGGTGCTGCTATATCTATTTTGAAACGTAATCAAAGGACAC
TTGGATTAGTACGTTTTACACAGGTATAACCTCGGTCACTATCAACATTC
AACAACAGCAAGTTATCGTCACAACAACCTACCCTTCAGAAGTAGTTCAA
AAAGCTATCGAATCCACTGGAATGCTTGCTATTGTCAAAGGACAAGGACT
AGATTGAATTCAATGTGAATATGACTTGTGGTAATTGTGAAAATTCAATT
CGTGACTCCCTTTCAAAATTACGAGATGTGGAGGCAGTTTATTTTATTTG
CTAACTGCTCAAGTAGTTCAATCTCAAACAAAACAACAAACACAAAAATG
GCAGAAGTGTCTTCAGTGATTAGCCTGTGGAATCATTGCTCGTTCAGCTG
GTTTATTTCAAAACAAAAAGATGGTATGCTCGTGTTCTGGTAAAACCATT
TGGCAAGAAAGAGAAGATGCTAAGAATGAAATGGGATGAGTTTGGGACAT
CATTGGGCGCTCTGTTGTGCTTCATGAAAAAGAAGATGACTTCTCGAATG
ACCCACATGGAAATGCTGGAAAAGGCATGCAGGAGACATGGGAAATGTAG
AAGTCGGTGAAAAAGGTTCGGCTGTTTTTCGTTACCAAGACAATATGATT
AAGCACTGGTGACGATTACAATCCAACAGAAAGTTGCCATGGTGACCGAG
AAAACACATCTAGAATCACAGAAGAGACTTGTGTTATTGATGGGTCATTC
AACGGATTAAATGCTGGAAAGTATGGACTTCATATTCACGAGTTTGGTGA
TTTGTCTGCGTTCTGTGAAAGATATTTCTAATCACATGGGTGCTGCTATA
TCTATTTTGAAACGTAATCAAAGGACACTTGGATTAGTACGTTTTACACA
GGTATAACCTCGGTCACTATCAACATTCAACAACAGCAAGTTATCGTCAC
AACAACCTACCCTTCAGAAGTAGTTCAAAAAGCTATCGAATCCACTGGAA
TGCTTGCTATTGTCAAAGGACAAGGACTAGATTGAATTCAATGTGAATAT
GACTTGTGGTAATTGTGAAAATTCAATTCGTGACTCCCTTTCAAAATTAC
GAGATGTGGAGGCAGTTTATTTTATTTGCTAACTGCTCAAGTAGTTCAAT
CTCAAACAAAACAACAAACACAAAAATGGCAGAAGTGTCTTCAGTGATTA
GCCTGTGGAATCATTGCTCGTTCAGCTGGTTTATTTCAAAACAAAAAGAT
GGTATGCTCGTGTTCTGGTAAAACCATTTGGCAAGAAAGAGAAGATGCTA
AGAATGAAATGGGATGAGTTTGGGACATCATTGGGCGCTCTGTTGTGCTT
CATGAAAAAGAAGATGACTTCTCGAATGACCCACATGGAAATGCTGGAAA
AGGCATGCAGGAGACATGGGAAATGTAGAAGTCGGTGAAAAAGGTTCGGC
TGTTTTTCGTTACCAAGACAATATGATTAAGCACTGGTGACGATTACAAT
CCAACAGAAAGTTGCCATGGTGACCGAGAAAACACATCTAGAATCACAGA
AGAGACTTGTGTTATTGATGGGTCATTCAACGGATTAAATGCTGGAAAGT
ATGGACTTCATATTCACGAGTTTGGTGATTTGTCTGCGTTCTGTGAAAGA
TATTTCTAATCACATGGGTGCTGCTATATCTATTTTGAAACGTAATCAAA
GGACACTTGGATTAGTACGTTTTACACAGGTATAACCTCGGTCACTATCA
ACATTCAACAACAGCAAGTTATCGTCACAACAACCTACCCTTCAGAAGTA
GTTCAAAAAGCTATCGAATCCACTGGAATGCTTGCTATTGTCAAAGGACA
AGGACTAGATTGAATTCAATGTGAATATGACTTGTGGTAATTGTGAAAAT
TCAATTCGTGACTCCCTTTCAAAATTACGAGATGTGGAGGCAGTTTATTT
TATTTGCTAACTGCTCAAGTAGTTCAATCTCAAACAAAACAACAAACACA
AAAATGGCAGAAGTGTCTTCAGTGATTAGCCTGTGGAATCATTGCTCGTT
CAGCTGGTTTATTTCAAAACAAAAAGATGGTATGCTCGTGTTCTGGTAAA
ACCATTTGGCAAGAAAGAGAAGATGCTAAGAATGAAATGGGATGAGTTTG
GGACATCATTGGGCGCTCTGTTGTGCTTCATGAAAAAGAAGATGACTTCT
CGAATGACCCACATGGAAATGCTGGAAAAGGCATGCAGGAGACATGGGAA
ATGTAGAAGTCGGTGAAAAAGGTTCGGCTGTTTTTCGTTACCAAGACAAT
ATGATTAAGCACTGGTGACGATTACAATCCAACAGAAAGTTGCCATGGTG
ACCGAGAAAACACATCTAGAATCACAGAAGAGACTTGTGTTATTGATGGG
TCATTCAACGGATTAAATGCTGGAAAGTATGGACTTCATATTCACGAGTT
TGGTGATTTGTCTGCGTTCTGTGAAAGATATTTCTAATCACATGGGTGCT
GCTATATCTATTTTGAAACGTAATCAAAGGACACTTGGATTAGTACGTTT
TACACAGGTATAACCTCGGTCACTATCAACATTCAACAACAGCAAGTTAT
CGTCACAACAACCTACCCTTCAGAAGTAGTTCAAAAAGCTATCGAATCCA
CTGGAATGCTTGCTATTGTCAAAGGACAAGGACTAGATTGAATTCAATGT
GAATATGACTTGTGGTAATTGTGAAAATTCAATTCGTGACTCCCTTTCAA
AATTACGAGATGTGGAGGCAGTTTATTTTATTTGCTAACTGCTCAAGTAG
TTCAATCTCAAACAAAACAACAAACACAAAAATGGCAGAAGTGTCTTCAG
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025197XLOC_025197Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041194-exon-sc0002744-1575043694:15920..16194TCONS_00041194-exon-sc0002744-1575043694:15920..16194Clytia hemisphaericaexon
TCONS_00041194-exon-sc0002744-1575043694:12259..12331TCONS_00041194-exon-sc0002744-1575043694:12259..12331Clytia hemisphaericaexon
TCONS_00041194-exon-sc0002744-1575043694:11069..11197TCONS_00041194-exon-sc0002744-1575043694:11069..11197Clytia hemisphaericaexon
TCONS_00041194-exon-sc0002744-1575043694:10720..10799TCONS_00041194-exon-sc0002744-1575043694:10720..10799Clytia hemisphaericaexon
TCONS_00041194-exon-sc0002744-1575043694:9841..9947TCONS_00041194-exon-sc0002744-1575043694:9841..9947Clytia hemisphaericaexon
TCONS_00041194-exon-sc0002744-1575043694:9561..9621TCONS_00041194-exon-sc0002744-1575043694:9561..9621Clytia hemisphaericaexon
TCONS_00041194-exon-sc0002744-1575043694:8928..9005TCONS_00041194-exon-sc0002744-1575043694:8928..9005Clytia hemisphaericaexon
TCONS_00041194-exon-sc0002744-1575043694:8615..8700TCONS_00041194-exon-sc0002744-1575043694:8615..8700Clytia hemisphaericaexon
TCONS_00041194-exon-sc0002744-1575043694:7621..8262TCONS_00041194-exon-sc0002744-1575043694:7621..8262Clytia hemisphaericaexon
TCONS_00041194-exon-sc0002744-1510915933:15920..16194TCONS_00041194-exon-sc0002744-1510915933:15920..16194Clytia hemisphaericaexon
TCONS_00041194-exon-sc0002744-1510915933:12259..12331TCONS_00041194-exon-sc0002744-1510915933:12259..12331Clytia hemisphaericaexon
TCONS_00041194-exon-sc0002744-1510915933:11069..11197TCONS_00041194-exon-sc0002744-1510915933:11069..11197Clytia hemisphaericaexon
TCONS_00041194-exon-sc0002744-1510915933:10720..10799TCONS_00041194-exon-sc0002744-1510915933:10720..10799Clytia hemisphaericaexon
TCONS_00041194-exon-sc0002744-1510915933:9841..9947TCONS_00041194-exon-sc0002744-1510915933:9841..9947Clytia hemisphaericaexon
TCONS_00041194-exon-sc0002744-1510915933:9561..9621TCONS_00041194-exon-sc0002744-1510915933:9561..9621Clytia hemisphaericaexon
TCONS_00041194-exon-sc0002744-1510915933:8928..9005TCONS_00041194-exon-sc0002744-1510915933:8928..9005Clytia hemisphaericaexon
TCONS_00041194-exon-sc0002744-1510915933:8615..8700TCONS_00041194-exon-sc0002744-1510915933:8615..8700Clytia hemisphaericaexon
TCONS_00041194-exon-sc0002744-1510915933:7621..8262TCONS_00041194-exon-sc0002744-1510915933:7621..8262Clytia hemisphaericaexon
TCONS_00041194-exon-sc0002744-1491911889:15920..16194TCONS_00041194-exon-sc0002744-1491911889:15920..16194Clytia hemisphaericaexon
TCONS_00041194-exon-sc0002744-1491911889:12259..12331TCONS_00041194-exon-sc0002744-1491911889:12259..12331Clytia hemisphaericaexon
TCONS_00041194-exon-sc0002744-1491911889:11069..11197TCONS_00041194-exon-sc0002744-1491911889:11069..11197Clytia hemisphaericaexon
TCONS_00041194-exon-sc0002744-1491911889:10720..10799TCONS_00041194-exon-sc0002744-1491911889:10720..10799Clytia hemisphaericaexon
TCONS_00041194-exon-sc0002744-1491911889:9841..9947TCONS_00041194-exon-sc0002744-1491911889:9841..9947Clytia hemisphaericaexon
TCONS_00041194-exon-sc0002744-1491911889:9561..9621TCONS_00041194-exon-sc0002744-1491911889:9561..9621Clytia hemisphaericaexon
TCONS_00041194-exon-sc0002744-1491911889:8928..9005TCONS_00041194-exon-sc0002744-1491911889:8928..9005Clytia hemisphaericaexon
TCONS_00041194-exon-sc0002744-1491911889:8615..8700TCONS_00041194-exon-sc0002744-1491911889:8615..8700Clytia hemisphaericaexon
TCONS_00041194-exon-sc0002744-1491911889:7621..8262TCONS_00041194-exon-sc0002744-1491911889:7621..8262Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041194-proteinTCONS_00041194-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002744supercontigsc0002744:7621..16194 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
45.6216	44.4109	17.787	14.2883	17.5912	10.6265	11.1347	11.7277	8.49779	6.57947	7.11306	4.89436	4.15466	4.67686	5.19312	5.67129	8.12178	8.1104	3.26019	3.81784	8.90188	8.37329	28.2104	25.6231	5.96952	8.82765	5.9403	6.41809	12.5365	15.7668
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001424SOD_Cu_Zn_dom
IPR006121HMA_dom
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006801superoxide metabolic process
GO:0055114oxidation-reduction process
GO:0030001metal ion transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030001 metal ion transport
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006801 superoxide metabolic process
molecular_function GO:0046872 metal ion binding
Blast
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BLAST of TCONS_00041194 vs. Swiss-Prot (Human)
Match: CCS (Copper chaperone for superoxide dismutase OS=Homo sapiens GN=CCS PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.187e-67
Identity = 113/243 (46.50%), Postives = 162/243 (66.67%), Query Frame = 3 
Query:  273 VIEFNVNMTCGNCENSIRDSLSKLRGXXXXXXXXXXXXXXXXXXYPSEVVQKAIESTGMLAIVKGQGLDISNHMGAAISILKRNQRTLGLVRFTQITEETCVIDGSFNGLNAGKYGLHIHEFGDLSAFCESTGDDYNPTESCHGDRENTSRHAGDMGNVEVGEKGSAVFRYQDNMIKVWDIIGRSVVLHEKEDDFSNDPH------GNAGKGLACGIIARSAGLFQNKKMVCSCSGKTIWQER 983
             +EF V MTC +C +++R SL  + G+  V ++++ Q V+V TT PS+ VQ  +E TG  A++KG G     ++GAA++IL       G+VRF Q+T E C+I+G+ +GL  G +GLH+H++GDL+  C S G+ +NP  + HG  +++ RH GD+GNV     G A+FR +D  +KVWD+IGRS+++ E EDD     H      GN+G+ LACGIIARSAGLFQN K +CSC G TIW+ER
Sbjct:   13 TLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMGSGQLQNLGAAVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKVWDVIGRSLIIDEGEDDLGRGGHPLSKITGNSGERLACGIIARSAGLFQNPKQICSCDGLTIWEER 255
The following BLAST results are available for this feature:
BLAST of TCONS_00041194 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CCS1.187e-6746.50Copper chaperone for superoxide dismutase OS=Homo ... [more]
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