TCONS_00041194-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00041194-protein
Unique NameTCONS_00041194-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length275

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00041194-protein ID=TCONS_00041194-protein|Name=TCONS_00041194-protein|organism=Clytia hemisphaerica|type=polypeptide|length=275bp
MWRQFILFANCSSSSISNKTTNTKMAEVSSVIEFNVNMTCGNCENSIRDS
LSKLRGITSVTINIQQQQVIVTTTYPSEVVQKAIESTGMLAIVKGQGLDI
SNHMGAAISILKRNQRTLGLVRFTQITEETCVIDGSFNGLNAGKYGLHIH
EFGDLSAFCESTGDDYNPTESCHGDRENTSRHAGDMGNVEVGEKGSAVFR
YQDNMIKVWDIIGRSVVLHEKEDDFSNDPHGNAGKGLACGIIARSAGLFQ
NKKMVCSCSGKTIWQEREDAKNEMG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_025197XLOC_025197Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00041194TCONS_00041194Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001424SOD_Cu_Zn_dom
IPR006121HMA_dom
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006801superoxide metabolic process
GO:0055114oxidation-reduction process
GO:0030001metal ion transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030001 metal ion transport
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006801 superoxide metabolic process
molecular_function GO:0046872 metal ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001424Superoxide dismutase, copper/zinc binding domainPRINTSPR00068CUZNDISMTASEcoord: 182..191
score: 62.89
coord: 146..168
score: 51.68
IPR001424Superoxide dismutase, copper/zinc binding domainGENE3D2.60.40.200coord: 97..244
e-value: 6.4E-45
score: 152.3
IPR001424Superoxide dismutase, copper/zinc binding domainPFAMPF00080Sod_Cucoord: 115..242
e-value: 3.2E-36
score: 124.5
IPR001424Superoxide dismutase, copper/zinc binding domainCDDcd00305Cu-Zn_Superoxide_Dismutasecoord: 119..240
e-value: 5.87373E-39
score: 133.925
IPR001424Superoxide dismutase, copper/zinc binding domainSUPERFAMILY49329Cu,Zn superoxide dismutase-likecoord: 102..271
NoneNo IPR availableGENE3D3.30.70.100coord: 15..96
e-value: 2.9E-15
score: 55.8
IPR006121Heavy metal-associated domain, HMAPFAMPF00403HMAcoord: 34..88
e-value: 7.6E-14
score: 51.8
IPR006121Heavy metal-associated domain, HMAPROSITEPS50846HMA_2coord: 37..93
score: 13.084
IPR006121Heavy metal-associated domain, HMACDDcd00371HMAcoord: 33..88
e-value: 7.41514E-13
score: 60.6973
IPR006121Heavy metal-associated domain, HMASUPERFAMILY55008HMA, heavy metal-associated domaincoord: 32..91

Blast
[Close]
BLAST of TCONS_00041194-protein vs. Swiss-Prot (Human)
Match: CCS (Copper chaperone for superoxide dismutase OS=Homo sapiens GN=CCS PE=1 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 7.658e-81
Identity = 113/242 (46.69%), Postives = 162/242 (66.94%), Query Frame = 0 
Query:   32 IEFNVNMTCGNCENSIRDSLSKLRGITSVTINIQQQQVIVTTTYPSEVVQKAIESTGMLAIVKGQGLDISNHMGAAISILKRNQRTLGLVRFTQITEETCVIDGSFNGLNAGKYGLHIHEFGDLSAFCESTGDDYNPTESCHGDRENTSRHAGDMGNVEVGEKGSAVFRYQDNMIKVWDIIGRSVVLHEKEDDFSNDPH------GNAGKGLACGIIARSAGLFQNKKMVCSCSGKTIWQER 267
            +EF V MTC +C +++R SL  + G+  V ++++ Q V+V TT PS+ VQ  +E TG  A++KG G     ++GAA++IL       G+VRF Q+T E C+I+G+ +GL  G +GLH+H++GDL+  C S G+ +NP  + HG  +++ RH GD+GNV     G A+FR +D  +KVWD+IGRS+++ E EDD     H      GN+G+ LACGIIARSAGLFQN K +CSC G TIW+ER
Sbjct:   14 LEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMGSGQLQNLGAAVAILGGPGTVQGVVRFLQLTPERCLIEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGASHGGPQDSDRHRGDLGNVRADADGRAIFRMEDEQLKVWDVIGRSLIIDEGEDDLGRGGHPLSKITGNSGERLACGIIARSAGLFQNPKQICSCDGLTIWEER 255
The following BLAST results are available for this feature:
BLAST of TCONS_00041194-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CCS7.658e-8146.69Copper chaperone for superoxide dismutase OS=Homo ... [more]
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