TCONS_00041077 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041077
Unique NameTCONS_00041077
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3422

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041077 ID=TCONS_00041077|Name=TCONS_00041077|organism=Clytia hemisphaerica|type=transcript|length=3422bp
cttgggaattgaatgacaaattttggttggttgattttggctgctgcacg
ttttattttgtttcaaactttcaagttttaattaattgtcttgcgaactt
gattcaggtcactctcatccttgttgtgcaaatacatcatgtagatgact
gatgttgtttttttctgaaagctagatttcctagagTGTGGCTATAAACT
GGCNtaattaattgtcttgcgaacttgattcaggtaactctcatccttgt
tgtgcaaatacatcctgtagatgactgatgttgtttttttctgaaagcta
gatttcctagatAGAGTGTGGCTATAAACTGGCTAGCTAGGGTtgtaaaa
tttgaagaattcaaCCCTCAAACATTAAAATGGGCAATCAACTTACATTA
TATCGAATTCAGCTCCACCTTGACAGCTTAAAGAACCTGGAAAATTTAAG
ACACCCATGATAATTCTCTCTTAAAGNATTCAGCTCCACCTTGACAGCTT
AAAGAACCTGGAAAATTTAAGACACCCATGATAATTCTCTCTTAAAGCAG
CTtagcttttgttttgattattttgaaaaatttgtccctttaaaaaatat
gtaaacaaactgcagccattttgtttcaaCCCGCTGATGTAACTTTTTTG
ACAAAGGCCGCCGTTTTCGCTCAGACAGCAAGCGTACACGCGTAGTTTGC
ATCAAAAAATTCAACGCTTTAGTATCAGGtaattttgaggaaaacgaaaa
acgaaagtgaatgtGCGCGTGGGCTGAATAATCGAGACCAAAGTACACAA
TTTTCAAGCTGGATGGATTTGATTGGTTTACCTCGTCTTGCTGCACGATT
TTAATTGGTCAAACGATTTGAATACCAATGATACGACACCACGCAGGAAA
ATTTTGTCTCTTTCTACCGTCCTTCTTGAAGTCATATATTGCAATAAGCT
GTCTAGGAGTCTTGTAGTCAATCTCTGGTGTTACACGGTGGTAGCTGAGA
TTTGCAATGGACAGTAGAATATTATTTTTGCTTGGCCTTTTGGCTGCTGT
AAATTGTACAGttcatttcaaagaaacatTTGATGATGACACTTGGGAAA
GCCGATGGGTCTACTCTACTGACAAAGGAGCTGATTctggaaaatttaaa
ctaacaGCTGGAAAGTTTTATGGTGATGAGAAAAGAGACCAAGGTATTCA
AACCTCTCAAGATGCCAAATTCTACCAACTCTcaacaaaaatggaaaaag
gtTTCTCCAACGAAGGAAAACCATTAGTTCTCCAATATCAAGTCAAACAT
GAACAAAATATTGACTGTGGTGGTGGATACATCAAACTTTTCCCATCTGA
CATCACACCAGAGAAAATGAATGGTGATACCCCTTACCATGTCATGTTTG
GCCCAGATATTTGTGGACCTGGTACCAAACGTGTTCATGCAATTTTCAGC
TACAAAGGAAAGAACCTCCTCACCAAGAAGGACATCAGATGCAAAGATGA
TGAAATGACCCATTTGTACACTTTGATTATCAACCCTGATAATACTTACG
AAGTCCGCATTGATGGATCCAAAGTTGAATCTGGAGATTTAGAAGCTGAT
TGGGACTTCCTTGCCCCCAAGAAAATTAAGGACCCAGAAGCCAAGAAACC
AGATGATTGGGTTGATAATGCTAAAATGGACGACCCAGAAGATAAAAAGC
CAGAAGATTGGGAGAAACCAGAATTGATCCCTGACCCAGATGCCAAAAAA
CCTGACGATTGGGATGATGAAGAAGATGGTGAATGGGAACCACCAATGAT
CAATAACCCTGAATACAAAGGAGAATGGAAACCAAAACAAATTGATAACC
CAGCTTACAAAGGAGAATGGGTTCATCCTGAGATTGATAACCCAGAATAC
TCAGCTGATGATGCTCTTTACAAATATGATGATATTGGTGCTGTTGGATT
TGAAATCTGGCAGGTCAAATCTGGAACTATCTTTGATAATATCCTTGTGA
CTGACGATGTTGCTGAAGCCGAAGCTTTCGCTAAAGAAACTTTTGAAGTT
CAAAAAGAGgaagagaagaaaatgaaagataaaCAAGACGAAGAAGCTCG
CAAGAAGCAAGAAGAGGAAGATGCCAAACGAaagaaggaagaagaagaaa
agaagaaagatgaaCCAGAAGAAgaggaagaagaagaagaggaagaagag
AAAGAAGCCAAAGAAGAAGAACCAGCCTCCAATGACGTCACCGAGGATGA
AGTTGAAGAAGAAGCTCCAAAGAAAGATGAACTATAACCTCATCTCACAC
TCACTCTTTTCGCTCTTATAGATGCATAGTATTTTCCAATTTCTGTTAAA
AGACAATTTATTAAAAGACACTTGTacaaatttttaagtttttttgaaaa
aatggatttcTTATTACAGTTTTCATATATATGTTTCAACGTTCGATACG
TTAGTTAATTGAATGATGACGTTTAACTGAAACGTGGAgtgtttttgaat
tgttttttgtttatggCTTCCACTTTACTTTTCTTAGTCAAATTAGTTTA
TTTATCccttttaaaaagcttttgtaaatgattttttctagCACTGATTA
ACAAATAGGGATGTTTAAATTGAAATCAGTTTTGTATTGTTTGTCTGCCA
AACATGGCCTCTGAATGTCTCTTATAGCTCTGAGGTTCATTGCAAATATT
TCgggtcaagttgaacatttacaagaatttttgtcattggattggtcgtt
aactattcaaacaaaaactttgattatatttttctaaagaacgcgtcatc
tctattgttttgaataaccaattatgtgagcatcttCTAATACAACTTCA
ATACAACTGNGTTTTGTATTGTTTGTCTGCCAAACATGGCCTCTGAATGT
CTCTTATAGCTCTGAGGTTCATTGCAAATATTTCGAATTAACTCGAACGT
GGTGAGGGCTATTTAAAATGTCTTTAACGAAACAAGATAGGGGCTACAAA
TCCCAAAATCACCTGTAAAACCACGCGATTCCTCGTTAATTATTTAACCT
AAGAAAATCTCGTTTTCTTTTCCTAAGTGTTTTACTGGGTTTTTCAATgc
tgtttttctttcaaaagtccAGTCTTTGAATCTTACTTTTCTCTTAGcaa
atcaatcaaatttttcgGATTATTCGAACGGCTGAATTTTAAGCAAAATG
TTGGTAtaatcagggatatgttatagcgaagctggataacgcacatttaa
aaaagccttgttctatctctgtccctgacattaaaacttgatatgaaatt
taacttttttaattacaaactcgtgaaatttggctttcctcttagccaat
gattctgctgctgcatttatcgttcacgattaaaaacttttaattatcaa
gagggtctgtaaaacattgatg
Run BLAST on NCBI

protein sequence of TCONS_00041077-protein

>TCONS_00041077-protein ID=TCONS_00041077-protein|Name=TCONS_00041077-protein|organism=Clytia hemisphaerica|type=polypeptide|length=426bp
MDSRILFLLGLLAAVNCTVHFKETFDDDTWESRWVYSTDKGADSGKFKLT
AGKFYGDEKRDQGIQTSQDAKFYQLSTKMEKGFSNEGKPLVLQYQVKHEQ
NIDCGGGYIKLFPSDITPEKMNGDTPYHVMFGPDICGPGTKRVHAIFSYK
GKNLLTKKDIRCKDDEMTHLYTLIINPDNTYEVRIDGSKVESGDLEADWD
FLAPKKIKDPEAKKPDDWVDNAKMDDPEDKKPEDWEKPELIPDPDAKKPD
DWDDEEDGEWEPPMINNPEYKGEWKPKQIDNPAYKGEWVHPEIDNPEYSA
DDALYKYDDIGAVGFEIWQVKSGTIFDNILVTDDVAEAEAFAKETFEVQK
EEEKKMKDKQDEEARKKQEEEDAKRKKEEEEKKKDEPEEEEEEEEEEEKE
AKEEEPASNDVTEDEVEEEAPKKDEL
Run BLAST on NCBI

transcript from alignment at sc0002693:3235..8000-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041077 ID=TCONS_00041077|Name=TCONS_00041077|organism=Clytia hemisphaerica|type=transcript|length=4766bp|location=Sequence derived from alignment at sc0002693:3235..8000- (Clytia hemisphaerica)
CTTGGGAATTGAATGACAAATTTTGGTTGGTTGATTTTGGCTGCTGCACG
TTTTATTTTGTTTCAAACTTTCAAGTTTTAATTAATTGTCTTGCGAACTT
GATTCAGGTCACTCTCATCCTTGTTGTGCAAATACATCATGTAGATGACT
GATGTTGTTTTTTTCTGAAAGCTAGATTTCCTAGAGTGTGGCTATAAACT
GGCNTAATTAATTGTCTTGCGAACTTGATTCAGGTAACTCTCATCCTTGT
TGTGCAAATACATCCTGTAGATGACTGATGTTGTTTTTTTCTGAAAGCTA
GATTTCCTAGATAGAGTGTGGCTATAAACTGGCTAGCTAGGGTTGTAAAA
TTTGAAGAATTCAACCCTCAAACATTAAAATGGGCAATCAACTTACATTA
TATCGAATTCAGCTCCACCTTGACAGCTTAAAGAACCTGGAAAATTTAAG
ACACCCATGATAATTCTCTCTTAAAGNATTCAGCTCCACCTTGACAGCTT
AAAGAACCTGGAAAATTTAAGACACCCATGATAATTCTCTCTTAAAGCAG
CTTAGCTTTTGTTTTGATTATTTTGAAAAATTTGTCCCTTTAAAAAATAT
GTAAACAAACTGCAGCCATTTTGTTTCAACCCGCTGATGTAACTTTTTTG
ACAAAGGCCGCCGTTTTCGCTCAGACAGCAAGCGTACACGCGTAGTTTGC
ATCAAAAAATTCAACGCTTTAGTATCAGGTAATTTTGAGGAAAACGAAAA
ACGAAAGTGAATGTGCGCGTGGGCTGAATAATCGAGACCAAAGTACACAA
TTTTCAAGCTGGATGGATTTGATTGGTTTACCTCGTCTTGCTGCACGATT
TTAATTGGTCAAACGATTTGAATACCAATGATACGACACCACGCAGGAAA
ATTTTGTCTCTTTCTACCGTCCTTCTTGAAGTCATATATTGCAATAAGCT
GTCTAGGAGTCTTGTAGTCAATCTCTGGTGTTACACGGTGGTAGCTGAGA
TTTGCAATGGACAGTAGAATATTATTTTTGCTTGGCCTTTTGGCTGCTGT
AAATTGTACAGTTCATTTCAAAGAAACATTTGATGGTAAGCCGACGGATT
CATCACCTTTTTACGTGAAATTCAAATATTCCTTGAATAATATATTAGGG
TTTGGCTTTCAGGCTTTGGGGTCTTTGCTTTGGTCTTTTGTTCCTTAAAT
TTGCTTGGGAATGTTGTGTGTCTGACAGAAAGTGTTGCGGACAGAGGCTG
GTAGTTAGTATTAGAATCAGAGGCACCTGGTAATTTTTAGCCATGGAGAA
TGATATGGGATATATTAGTCAAATGAAATTTTGATAATCCCTTTCTTCAA
AACAAAGATCTAAAATAAGCTGAATTTTCTGTTACTTTTTTGTAGATGAC
ACTTGGGAAAGCCGATGGGTCTACTCTACTGACAAAGGAGCTGATTCTGG
AAAATTTAAACTAACAGCTGGAAAGTTTTATGGTGATGAGAAAAGAGACC
AAGGTATTCAAACCTCTCAAGATGCCAAATTCTACCAACTCTCAACAAAA
ATGGAAAAAGGTTTCTCCAACGAAGGAAAACCATTAGTTCTCCAATATCA
AGTCAAACATGAACAAAATATTGACTGTGGTGGTGGATACATCAAACTTT
TCCCATCTGACATCACACCAGAGAAAATGAATGGTGATACCCCTTACCAT
GTCATGTTTGGCCCAGATATTTGTGGACCTGGTACCAAACGTGTTCATGC
AATTTTCAGCTACAAAGGAAAGAACCTCCTCACCAAGAAGGACATCAGGT
AACTAATCTTTTGATCTGTAGTAATAATATTCTTAAAGAATGATTACTTC
ATTACAATGATGTTTCAATGATCACAATATTTCCCCTTAAACTTGCAGTA
TTTAATGCATACAATATGATTGCTTTGTTTTTCAATTATTGTTTGATTAC
ACTTTTAGATGCAAAGATGATGAAATGACCCATTTGTACACTTTGATTAT
CAACCCTGATAATACTTACGAAGTCCGCATTGATGGATCCAAAGTTGAAT
CTGGAGATTTAGAAGCTGATTGGGACTTCCTTGCCCCCAAGAAAATTAAG
GACCCAGAAGCCAAGAAACCAGATGATTGGGTTGATAATGCTAAAATGGA
CGACCCAGAAGATAAAAAGCCAGAAGATTGGGAGAAACCAGAATTGATCC
CTGACCCAGATGCCAAAAAACCTGACGATTGGGATGATGAAGAAGATGGT
GAATGGGAACCACCAATGATCAATAACCCTGAATACAAAGTAAGTCTGAA
TTTTTTAATGTCCTGAAAATTTTTTAAGGTTTAGTGAAATAAAGAAATCC
TTCATCCACTATAATAGCTTTTGATATATTTTTTAGAAGCTTTAAAGGAT
AGGAGATCTATTTTTTGAATGATTAACAAAACAAAATTGAATCTATTTTG
AACCTCTTGTAGGGAGAATGGAAACCAAAACAAATTGATAACCCAGCTTA
CAAAGGAGAATGGGTTCATCCTGAGATTGATAACCCAGAATACTCAGCTG
ATGATGCTCTTTACAAATATGATGATATTGGTGCTGTTGGATTTGAAATC
TGGCAGGTCAGTGTTAATTACATTACAATCAAATTTAATTATCAGTAATT
ATTTACTAGATTAAAAGATTAGTCTAATTATATCTCCACTCACTCAGATT
TCCGTTGGATAATCAATTTACTTCAGAAAACCACAAAACCTTTTCTAAGA
CTTTTATGTAGAATTATGACAATTTGTTTTTTTTATTTCTAAAAATTTTA
GACTAACAAAACAAATACCAAACTTTCACTTTTAGGTCAAATCTGGAACT
ATCTTTGATAATATCCTTGTGACTGACGATGTTGCTGAAGCCGAAGCTTT
CGCTAAAGAAACTTTTGAAGTTCAAAAAGAGGAAGAGAAGAAAATGAAAG
ATAAACAAGACGAAGAAGCTCGCAAGAAGCAAGAAGAGGAAGATGCCAAA
CGAAAGAAGGAAGAAGAAGAAAAGAAGAAAGATGAACCAGAAGAAGTAAG
ATTCTTTTTAAGTCCTTTTTTACATTGTGAGTGTGCTAAGCTTATTTACT
TAACAGACTTGAATACCAGGCTGCTACACTTTTTTATAAAGAACTCCAAT
TTTCAGGTCATGGATGGGGTTGCTGGGCATTCTAGCTCATTTTCTGAAAA
TGTGCTTGACCACCCCTGATATTATTATACCATATAAATACTTATTGGGT
CAAGGGCTATCGTTTGTCATGCTTAGATTATCTTAAAAGCTTTTACATGA
CGAGATAGTGATACTAAAGAGAAATTTGGCTAATTTCAGGGCTTATTGCT
AATGAAAAAAATGTGTACCTACACAAACTCTAATTTTTTCAGTATTAAGC
CACAGTGAGGAGTTAATTGAGATGTCCCATTGATCTTGTTTTCCATTTAT
TTAAACGTCCGTTTGCCTAAAATTTCGCTATATTTTAAAGACCTTTGATC
TTTTTTTGTTTTTACAGGAGGAAGAAGAAGAAGAGGAAGAAGAGAAAGAA
GCCAAAGAAGAAGAACCAGCCTCCAATGACGTCACCGAGGATGAAGTTGA
AGAAGAAGCTCCAAAGAAAGATGAACTATAACCTCATCTCACACTCACTC
TTTTCGCTCTTATAGATGCATAGTATTTTCCAATTTCTGTTAAAAGACAA
TTTATTAAAAGACACTTGTACAAATTTTTAAGTTTTTTTGAAAAAATGGA
TTTCTTATTACAGTTTTCATATATATGTTTCAACGTTCGATACGTTAGTT
AATTGAATGATGACGTTTAACTGAAACGTGGAGTGTTTTTGAATTGTTTT
TTGTTTATGGCTTCCACTTTACTTTTCTTAGTCAAATTAGTTTATTTATC
CCTTTTAAAAAGCTTTTGTAAATGATTTTTTCTAGCACTGATTAACAAAT
AGGGATGTTTAAATTGAAATCAGTTTTGTATTGTTTGTCTGCCAAACATG
GCCTCTGAATGTCTCTTATAGCTCTGAGGTTCATTGCAAATATTTCGGGT
CAAGTTGAACATTTACAAGAATTTTTGTCATTGGATTGGTCGTTAACTAT
TCAAACAAAAACTTTGATTATATTTTTCTAAAGAACGCGTCATCTCTATT
GTTTTGAATAACCAATTATGTGAGCATCTTCTAATACAACTTCAATACAA
CTGNGTTTTGTATTGTTTGTCTGCCAAACATGGCCTCTGAATGTCTCTTA
TAGCTCTGAGGTTCATTGCAAATATTTCGAATTAACTCGAACGTGGTGAG
GGCTATTTAAAATGTCTTTAACGAAACAAGATAGGGGCTACAAATCCCAA
AATCACCTGTAAAACCACGCGATTCCTCGTTAATTATTTAACCTAAGAAA
ATCTCGTTTTCTTTTCCTAAGTGTTTTACTGGGTTTTTCAATGCTGTTTT
TCTTTCAAAAGTCCAGTCTTTGAATCTTACTTTTCTCTTAGCAAATCAAT
CAAATTTTTCGGATTATTCGAACGGCTGAATTTTAAGCAAAATGTTGGTA
TAATCAGGGATATGTTATAGCGAAGCTGGATAACGCACATTTAAAAAAGC
CTTGTTCTATCTCTGTCCCTGACATTAAAACTTGATATGAAATTTAACTT
TTTTAATTACAAACTCGTGAAATTTGGCTTTCCTCTTAGCCAATGATTCT
GCTGCTGCATTTATCGTTCACGATTAAAAACTTTTAATTATCAAGAGGGT
CTGTAAAACATTGATG

Coding sequence (CDS) from alignment at sc0002693:3235..8000-

>TCONS_00041077 ID=TCONS_00041077|Name=TCONS_00041077|organism=Clytia hemisphaerica|type=CDS|length=7686bp|location=Sequence derived from alignment at sc0002693:3235..8000- (Clytia hemisphaerica)
GAGGAAGAAGAAGAAGAGGAAGAAGAGAAAGAAGCCAAAGAAGAAGAACC
AGCCTCCAATGACGTCACCGAGGATGAAGTTGAAGAAGAAGCTCCAAAGA
AAGATGAACTATAAGTCAAATCTGGAACTATCTTTGATAATATCCTTGTG
ACTGACGATGTTGCTGAAGCCGAAGCTTTCGCTAAAGAAACTTTTGAAGT
TCAAAAAGAGGAAGAGAAGAAAATGAAAGATAAACAAGACGAAGAAGCTC
GCAAGAAGCAAGAAGAGGAAGATGCCAAACGAAAGAAGGAAGAAGAAGAA
AAGAAGAAAGATGAACCAGAAGAAGGAGAATGGAAACCAAAACAAATTGA
TAACCCAGCTTACAAAGGAGAATGGGTTCATCCTGAGATTGATAACCCAG
AATACTCAGCTGATGATGCTCTTTACAAATATGATGATATTGGTGCTGTT
GGATTTGAAATCTGGCAGATGCAAAGATGATGAAATGACCCATTTGTACA
CTTTGATTATCAACCCTGATAATACTTACGAAGTCCGCATTGATGGATCC
AAAGTTGAATCTGGAGATTTAGAAGCTGATTGGGACTTCCTTGCCCCCAA
GAAAATTAAGGACCCAGAAGCCAAGAAACCAGATGATTGGGTTGATAATG
CTAAAATGGACGACCCAGAAGATAAAAAGCCAGAAGATTGGGAGAAACCA
GAATTGATCCCTGACCCAGATGCCAAAAAACCTGACGATTGGGATGATGA
AGAAGATGGTGAATGGGAACCACCAATGATCAATAACCCTGAATACAAAA
TGACACTTGGGAAAGCCGATGGGTCTACTCTACTGACAAAGGAGCTGATT
CTGGAAAATTTAAACTAACAGCTGGAAAGTTTTATGGTGATGAGAAAAGA
GACCAAGGTATTCAAACCTCTCAAGATGCCAAATTCTACCAACTCTCAAC
AAAAATGGAAAAAGGTTTCTCCAACGAAGGAAAACCATTAGTTCTCCAAT
ATCAAGTCAAACATGAACAAAATATTGACTGTGGTGGTGGATACATCAAA
CTTTTCCCATCTGACATCACACCAGAGAAAATGAATGGTGATACCCCTTA
CCATGTCATGTTTGGCCCAGATATTTGTGGACCTGGTACCAAACGTGTTC
ATGCAATTTTCAGCTACAAAGGAAAGAACCTCCTCACCAAGAAGGACATC
AGATGGACAGTAGAATATTATTTTTGCTTGGCCTTTTGGCTGCTGTAAAT
TGTACAGTTCATTTCAAAGAAACATTTGATGGAGGAAGAAGAAGAAGAGG
AAGAAGAGAAAGAAGCCAAAGAAGAAGAACCAGCCTCCAATGACGTCACC
GAGGATGAAGTTGAAGAAGAAGCTCCAAAGAAAGATGAACTATAAGTCAA
ATCTGGAACTATCTTTGATAATATCCTTGTGACTGACGATGTTGCTGAAG
CCGAAGCTTTCGCTAAAGAAACTTTTGAAGTTCAAAAAGAGGAAGAGAAG
AAAATGAAAGATAAACAAGACGAAGAAGCTCGCAAGAAGCAAGAAGAGGA
AGATGCCAAACGAAAGAAGGAAGAAGAAGAAAAGAAGAAAGATGAACCAG
AAGAAGGAGAATGGAAACCAAAACAAATTGATAACCCAGCTTACAAAGGA
GAATGGGTTCATCCTGAGATTGATAACCCAGAATACTCAGCTGATGATGC
TCTTTACAAATATGATGATATTGGTGCTGTTGGATTTGAAATCTGGCAGA
TGCAAAGATGATGAAATGACCCATTTGTACACTTTGATTATCAACCCTGA
TAATACTTACGAAGTCCGCATTGATGGATCCAAAGTTGAATCTGGAGATT
TAGAAGCTGATTGGGACTTCCTTGCCCCCAAGAAAATTAAGGACCCAGAA
GCCAAGAAACCAGATGATTGGGTTGATAATGCTAAAATGGACGACCCAGA
AGATAAAAAGCCAGAAGATTGGGAGAAACCAGAATTGATCCCTGACCCAG
ATGCCAAAAAACCTGACGATTGGGATGATGAAGAAGATGGTGAATGGGAA
CCACCAATGATCAATAACCCTGAATACAAAATGACACTTGGGAAAGCCGA
TGGGTCTACTCTACTGACAAAGGAGCTGATTCTGGAAAATTTAAACTAAC
AGCTGGAAAGTTTTATGGTGATGAGAAAAGAGACCAAGGTATTCAAACCT
CTCAAGATGCCAAATTCTACCAACTCTCAACAAAAATGGAAAAAGGTTTC
TCCAACGAAGGAAAACCATTAGTTCTCCAATATCAAGTCAAACATGAACA
AAATATTGACTGTGGTGGTGGATACATCAAACTTTTCCCATCTGACATCA
CACCAGAGAAAATGAATGGTGATACCCCTTACCATGTCATGTTTGGCCCA
GATATTTGTGGACCTGGTACCAAACGTGTTCATGCAATTTTCAGCTACAA
AGGAAAGAACCTCCTCACCAAGAAGGACATCAGATGGACAGTAGAATATT
ATTTTTGCTTGGCCTTTTGGCTGCTGTAAATTGTACAGTTCATTTCAAAG
AAACATTTGATGGAGGAAGAAGAAGAAGAGGAAGAAGAGAAAGAAGCCAA
AGAAGAAGAACCAGCCTCCAATGACGTCACCGAGGATGAAGTTGAAGAAG
AAGCTCCAAAGAAAGATGAACTATAAGTCAAATCTGGAACTATCTTTGAT
AATATCCTTGTGACTGACGATGTTGCTGAAGCCGAAGCTTTCGCTAAAGA
AACTTTTGAAGTTCAAAAAGAGGAAGAGAAGAAAATGAAAGATAAACAAG
ACGAAGAAGCTCGCAAGAAGCAAGAAGAGGAAGATGCCAAACGAAAGAAG
GAAGAAGAAGAAAAGAAGAAAGATGAACCAGAAGAAGGAGAATGGAAACC
AAAACAAATTGATAACCCAGCTTACAAAGGAGAATGGGTTCATCCTGAGA
TTGATAACCCAGAATACTCAGCTGATGATGCTCTTTACAAATATGATGAT
ATTGGTGCTGTTGGATTTGAAATCTGGCAGATGCAAAGATGATGAAATGA
CCCATTTGTACACTTTGATTATCAACCCTGATAATACTTACGAAGTCCGC
ATTGATGGATCCAAAGTTGAATCTGGAGATTTAGAAGCTGATTGGGACTT
CCTTGCCCCCAAGAAAATTAAGGACCCAGAAGCCAAGAAACCAGATGATT
GGGTTGATAATGCTAAAATGGACGACCCAGAAGATAAAAAGCCAGAAGAT
TGGGAGAAACCAGAATTGATCCCTGACCCAGATGCCAAAAAACCTGACGA
TTGGGATGATGAAGAAGATGGTGAATGGGAACCACCAATGATCAATAACC
CTGAATACAAAATGACACTTGGGAAAGCCGATGGGTCTACTCTACTGACA
AAGGAGCTGATTCTGGAAAATTTAAACTAACAGCTGGAAAGTTTTATGGT
GATGAGAAAAGAGACCAAGGTATTCAAACCTCTCAAGATGCCAAATTCTA
CCAACTCTCAACAAAAATGGAAAAAGGTTTCTCCAACGAAGGAAAACCAT
TAGTTCTCCAATATCAAGTCAAACATGAACAAAATATTGACTGTGGTGGT
GGATACATCAAACTTTTCCCATCTGACATCACACCAGAGAAAATGAATGG
TGATACCCCTTACCATGTCATGTTTGGCCCAGATATTTGTGGACCTGGTA
CCAAACGTGTTCATGCAATTTTCAGCTACAAAGGAAAGAACCTCCTCACC
AAGAAGGACATCAGATGGACAGTAGAATATTATTTTTGCTTGGCCTTTTG
GCTGCTGTAAATTGTACAGTTCATTTCAAAGAAACATTTGATGGAGGAAG
AAGAAGAAGAGGAAGAAGAGAAAGAAGCCAAAGAAGAAGAACCAGCCTCC
AATGACGTCACCGAGGATGAAGTTGAAGAAGAAGCTCCAAAGAAAGATGA
ACTATAAGTCAAATCTGGAACTATCTTTGATAATATCCTTGTGACTGACG
ATGTTGCTGAAGCCGAAGCTTTCGCTAAAGAAACTTTTGAAGTTCAAAAA
GAGGAAGAGAAGAAAATGAAAGATAAACAAGACGAAGAAGCTCGCAAGAA
GCAAGAAGAGGAAGATGCCAAACGAAAGAAGGAAGAAGAAGAAAAGAAGA
AAGATGAACCAGAAGAAGGAGAATGGAAACCAAAACAAATTGATAACCCA
GCTTACAAAGGAGAATGGGTTCATCCTGAGATTGATAACCCAGAATACTC
AGCTGATGATGCTCTTTACAAATATGATGATATTGGTGCTGTTGGATTTG
AAATCTGGCAGATGCAAAGATGATGAAATGACCCATTTGTACACTTTGAT
TATCAACCCTGATAATACTTACGAAGTCCGCATTGATGGATCCAAAGTTG
AATCTGGAGATTTAGAAGCTGATTGGGACTTCCTTGCCCCCAAGAAAATT
AAGGACCCAGAAGCCAAGAAACCAGATGATTGGGTTGATAATGCTAAAAT
GGACGACCCAGAAGATAAAAAGCCAGAAGATTGGGAGAAACCAGAATTGA
TCCCTGACCCAGATGCCAAAAAACCTGACGATTGGGATGATGAAGAAGAT
GGTGAATGGGAACCACCAATGATCAATAACCCTGAATACAAAATGACACT
TGGGAAAGCCGATGGGTCTACTCTACTGACAAAGGAGCTGATTCTGGAAA
ATTTAAACTAACAGCTGGAAAGTTTTATGGTGATGAGAAAAGAGACCAAG
GTATTCAAACCTCTCAAGATGCCAAATTCTACCAACTCTCAACAAAAATG
GAAAAAGGTTTCTCCAACGAAGGAAAACCATTAGTTCTCCAATATCAAGT
CAAACATGAACAAAATATTGACTGTGGTGGTGGATACATCAAACTTTTCC
CATCTGACATCACACCAGAGAAAATGAATGGTGATACCCCTTACCATGTC
ATGTTTGGCCCAGATATTTGTGGACCTGGTACCAAACGTGTTCATGCAAT
TTTCAGCTACAAAGGAAAGAACCTCCTCACCAAGAAGGACATCAGATGGA
CAGTAGAATATTATTTTTGCTTGGCCTTTTGGCTGCTGTAAATTGTACAG
TTCATTTCAAAGAAACATTTGATGGAGGAAGAAGAAGAAGAGGAAGAAGA
GAAAGAAGCCAAAGAAGAAGAACCAGCCTCCAATGACGTCACCGAGGATG
AAGTTGAAGAAGAAGCTCCAAAGAAAGATGAACTATAAGTCAAATCTGGA
ACTATCTTTGATAATATCCTTGTGACTGACGATGTTGCTGAAGCCGAAGC
TTTCGCTAAAGAAACTTTTGAAGTTCAAAAAGAGGAAGAGAAGAAAATGA
AAGATAAACAAGACGAAGAAGCTCGCAAGAAGCAAGAAGAGGAAGATGCC
AAACGAAAGAAGGAAGAAGAAGAAAAGAAGAAAGATGAACCAGAAGAAGG
AGAATGGAAACCAAAACAAATTGATAACCCAGCTTACAAAGGAGAATGGG
TTCATCCTGAGATTGATAACCCAGAATACTCAGCTGATGATGCTCTTTAC
AAATATGATGATATTGGTGCTGTTGGATTTGAAATCTGGCAGATGCAAAG
ATGATGAAATGACCCATTTGTACACTTTGATTATCAACCCTGATAATACT
TACGAAGTCCGCATTGATGGATCCAAAGTTGAATCTGGAGATTTAGAAGC
TGATTGGGACTTCCTTGCCCCCAAGAAAATTAAGGACCCAGAAGCCAAGA
AACCAGATGATTGGGTTGATAATGCTAAAATGGACGACCCAGAAGATAAA
AAGCCAGAAGATTGGGAGAAACCAGAATTGATCCCTGACCCAGATGCCAA
AAAACCTGACGATTGGGATGATGAAGAAGATGGTGAATGGGAACCACCAA
TGATCAATAACCCTGAATACAAAATGACACTTGGGAAAGCCGATGGGTCT
ACTCTACTGACAAAGGAGCTGATTCTGGAAAATTTAAACTAACAGCTGGA
AAGTTTTATGGTGATGAGAAAAGAGACCAAGGTATTCAAACCTCTCAAGA
TGCCAAATTCTACCAACTCTCAACAAAAATGGAAAAAGGTTTCTCCAACG
AAGGAAAACCATTAGTTCTCCAATATCAAGTCAAACATGAACAAAATATT
GACTGTGGTGGTGGATACATCAAACTTTTCCCATCTGACATCACACCAGA
GAAAATGAATGGTGATACCCCTTACCATGTCATGTTTGGCCCAGATATTT
GTGGACCTGGTACCAAACGTGTTCATGCAATTTTCAGCTACAAAGGAAAG
AACCTCCTCACCAAGAAGGACATCAGATGGACAGTAGAATATTATTTTTG
CTTGGCCTTTTGGCTGCTGTAAATTGTACAGTTCATTTCAAAGAAACATT
TGATGGAGGAAGAAGAAGAAGAGGAAGAAGAGAAAGAAGCCAAAGAAGAA
GAACCAGCCTCCAATGACGTCACCGAGGATGAAGTTGAAGAAGAAGCTCC
AAAGAAAGATGAACTATAAGTCAAATCTGGAACTATCTTTGATAATATCC
TTGTGACTGACGATGTTGCTGAAGCCGAAGCTTTCGCTAAAGAAACTTTT
GAAGTTCAAAAAGAGGAAGAGAAGAAAATGAAAGATAAACAAGACGAAGA
AGCTCGCAAGAAGCAAGAAGAGGAAGATGCCAAACGAAAGAAGGAAGAAG
AAGAAAAGAAGAAAGATGAACCAGAAGAAGGAGAATGGAAACCAAAACAA
ATTGATAACCCAGCTTACAAAGGAGAATGGGTTCATCCTGAGATTGATAA
CCCAGAATACTCAGCTGATGATGCTCTTTACAAATATGATGATATTGGTG
CTGTTGGATTTGAAATCTGGCAGATGCAAAGATGATGAAATGACCCATTT
GTACACTTTGATTATCAACCCTGATAATACTTACGAAGTCCGCATTGATG
GATCCAAAGTTGAATCTGGAGATTTAGAAGCTGATTGGGACTTCCTTGCC
CCCAAGAAAATTAAGGACCCAGAAGCCAAGAAACCAGATGATTGGGTTGA
TAATGCTAAAATGGACGACCCAGAAGATAAAAAGCCAGAAGATTGGGAGA
AACCAGAATTGATCCCTGACCCAGATGCCAAAAAACCTGACGATTGGGAT
GATGAAGAAGATGGTGAATGGGAACCACCAATGATCAATAACCCTGAATA
CAAAATGACACTTGGGAAAGCCGATGGGTCTACTCTACTGACAAAGGAGC
TGATTCTGGAAAATTTAAACTAACAGCTGGAAAGTTTTATGGTGATGAGA
AAAGAGACCAAGGTATTCAAACCTCTCAAGATGCCAAATTCTACCAACTC
TCAACAAAAATGGAAAAAGGTTTCTCCAACGAAGGAAAACCATTAGTTCT
CCAATATCAAGTCAAACATGAACAAAATATTGACTGTGGTGGTGGATACA
TCAAACTTTTCCCATCTGACATCACACCAGAGAAAATGAATGGTGATACC
CCTTACCATGTCATGTTTGGCCCAGATATTTGTGGACCTGGTACCAAACG
TGTTCATGCAATTTTCAGCTACAAAGGAAAGAACCTCCTCACCAAGAAGG
ACATCAGATGGACAGTAGAATATTATTTTTGCTTGGCCTTTTGGCTGCTG
TAAATTGTACAGTTCATTTCAAAGAAACATTTGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025094XLOC_025094Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041077-proteinTCONS_00041077-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041077-exon-sc0002693-1575043694:6916..8000TCONS_00041077-exon-sc0002693-1575043694:6916..8000Clytia hemisphaericaexon
TCONS_00041077-exon-sc0002693-1575043694:6203..6605TCONS_00041077-exon-sc0002693-1575043694:6203..6605Clytia hemisphaericaexon
TCONS_00041077-exon-sc0002693-1575043694:5712..6042TCONS_00041077-exon-sc0002693-1575043694:5712..6042Clytia hemisphaericaexon
TCONS_00041077-exon-sc0002693-1575043694:5395..5538TCONS_00041077-exon-sc0002693-1575043694:5395..5538Clytia hemisphaericaexon
TCONS_00041077-exon-sc0002693-1575043694:4956..5165TCONS_00041077-exon-sc0002693-1575043694:4956..5165Clytia hemisphaericaexon
TCONS_00041077-exon-sc0002693-1575043694:3235..4483TCONS_00041077-exon-sc0002693-1575043694:3235..4483Clytia hemisphaericaexon
TCONS_00041077-exon-sc0002693-1510915933:6916..8000TCONS_00041077-exon-sc0002693-1510915933:6916..8000Clytia hemisphaericaexon
TCONS_00041077-exon-sc0002693-1510915933:6203..6605TCONS_00041077-exon-sc0002693-1510915933:6203..6605Clytia hemisphaericaexon
TCONS_00041077-exon-sc0002693-1510915933:5712..6042TCONS_00041077-exon-sc0002693-1510915933:5712..6042Clytia hemisphaericaexon
TCONS_00041077-exon-sc0002693-1510915933:5395..5538TCONS_00041077-exon-sc0002693-1510915933:5395..5538Clytia hemisphaericaexon
TCONS_00041077-exon-sc0002693-1510915933:4956..5165TCONS_00041077-exon-sc0002693-1510915933:4956..5165Clytia hemisphaericaexon
TCONS_00041077-exon-sc0002693-1510915933:3235..4483TCONS_00041077-exon-sc0002693-1510915933:3235..4483Clytia hemisphaericaexon
TCONS_00041077-exon-sc0002693-1491911889:6916..8000TCONS_00041077-exon-sc0002693-1491911889:6916..8000Clytia hemisphaericaexon
TCONS_00041077-exon-sc0002693-1491911889:6203..6605TCONS_00041077-exon-sc0002693-1491911889:6203..6605Clytia hemisphaericaexon
TCONS_00041077-exon-sc0002693-1491911889:5712..6042TCONS_00041077-exon-sc0002693-1491911889:5712..6042Clytia hemisphaericaexon
TCONS_00041077-exon-sc0002693-1491911889:5395..5538TCONS_00041077-exon-sc0002693-1491911889:5395..5538Clytia hemisphaericaexon
TCONS_00041077-exon-sc0002693-1491911889:4956..5165TCONS_00041077-exon-sc0002693-1491911889:4956..5165Clytia hemisphaericaexon
TCONS_00041077-exon-sc0002693-1491911889:3235..4483TCONS_00041077-exon-sc0002693-1491911889:3235..4483Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002693supercontigsc0002693:3235..8000 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
785.226	805.003	360.192	290.39	70.398	57.6548	316.011	323.134	258.623	306.344	306.237	276.283	525.308	482.223	531.301	526.674	456.536	497.544	206.576	318.118	273.773	282.197	504.982	477.8	367.721	383.929	337.059	283.609	449.121	350.522
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001580Calret/calnex
IPR009169Calreticulin
IPR018124Calret/calnex_CS
IPR009033Calreticulin/calnexin_P_dom
IPR013320ConA-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
Vocabulary: Molecular Function
TermDefinition
GO:0051082unfolded protein binding
GO:0005509calcium ion binding
GO:0005515protein binding
Vocabulary: Cellular Component
TermDefinition
GO:0005783endoplasmic reticulum
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006457 protein folding
cellular_component GO:0005783 endoplasmic reticulum
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0051082 unfolded protein binding
Blast
[Close]
BLAST of TCONS_00041077 vs. Swiss-Prot (Human)
Match: CALR (Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1)

HSP 1 Score: 383.259 bits (983), Expect = 3.820e-121
Identity = 221/318 (69.50%), Postives = 266/318 (83.65%), Query Frame = 2 
Query: 1058 TVHFKETF-DDDTWESRWVYSTDKGADSGKFKLTAGKFYGDEKRDQGIQTSQDAKFYQLSTKMEKGFSNEGKPLVLQYQVKHEQNIDCGGGYIKLFPSDITPEKMNGDTPYHVMFGPDICGPGTKRVHAIFSYKGKNLLTKKDIRCKDDEMTHLYTLIINPDNTYEVRIDGSKVESGDLEADWDFLAPKKIKDPEAKKPDDWVDNAXXXXXXXXXXXXXXXXXLIXXXXXXXXXXXXXXXXXXXXXXMINNPEYKGEWKPKQIDNPAYKGEWVHPEIDNPEYSADDALYKYDDIGAVGFEIWQVKSGTIFDNILVTDD 2008
             V+FKE F D D W SRW+ S  K +D GKF L++GKFYGDE++D+G+QTSQDA+FY LS   E  FSN+G+ LV+Q+ VKHEQNIDCGGGY+KLFP+ +    M+GD+ Y++MFGPDICGPGTK+VH IF+YKGKN+L  KDIRCKDDE THLYTLI+ PDNTYEV+ID S+VESG LE DWDFL PKKIKDP+A KP+DW + AK+DDP D KPEDW+KPE IPDPDAKKP+DWD+E DGEWEPP+I NPEYKGEWKP+QIDNP YKG W+HPEIDNPEYS D ++Y YD+ G +G ++WQVKSGTIFDN L+T+D
Sbjct:   20 AVYFKEQFLDGDGWTSRWIESKHK-SDFGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASFEP-FSNKGQTLVVQFTVKHEQNIDCGGGYVKLFPNSLDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGKNVLINKDIRCKDDEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPPKKIKDPDASKPEDWDERAKIDDPTDSKPEDWDKPEHIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEYSPDPSIYAYDNFGVLGLDLWQVKSGTIFDNFLITND 335
The following BLAST results are available for this feature:
BLAST of TCONS_00041077 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALR3.820e-12169.50Calreticulin OS=Homo sapiens GN=CALR PE=1 SV=1[more]
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