TCONS_00041023 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041023
Unique NameTCONS_00041023
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1127

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041023 ID=TCONS_00041023|Name=TCONS_00041023|organism=Clytia hemisphaerica|type=transcript|length=1127bp
ATTTGGATAAGAAAGCCATCAAAGCCAAAGTTCTGTCACACATGACCGAT
AGGCGGAAAACATCAAGAAAAATTGATTTCACCACCAAAAAATCCAATTC
AATGAAATCACCTAAGGAAATAGTCACCACACCACAAAAACCAAACAACA
ACAAGGATTTCGAGGATGAAGAAGAGTTGTAATTTAATTCTATCCCTCCA
AAAAGATGTGCTGAATCTTCAAAAGAATCACCGGAGAAAATATCCACATA
TTCCACGTCCACTTCCACTTccacaaataaaaagttaaacatGAACATGA
GTGAGGAAGAAGAGTCACAGACACAATTCAATTTTCCATCACCAAAAATA
CGtAAAGTTAGCAAGGATGACCAACAGCGTGAAAGCAGCAACAtatcTCA
AAGTCAAACGAGCTCCAAATTTATCAACCAAGTCAATGTAGAAGATCTGA
CCAACAAGGATTTCGAAAATATTGCAAGAATATTCAGCAACAAAAAGACC
TTGAGCAAATCTGCAATTCTTGCAGATGTTacaaactttaaacagttgCG
TTTGGACGTAAGGAACATGAGAGACATCCACCTGATGGCTGAGAGTGTGG
GGCGTCAGCTGGTCGAACACCGCATGGTGATCATTGGGTCTTGTCCAGTT
ACGGAGAAAGATGATGTCATTCTTATTGCAAAGTAATTCTTTTTACAGCT
TATTTTTAGGGTAACAATCTTTTTTTCGGAATAAAAGTCTTTCATTTAAG
TTGTGTTTTTATTCAGAATTAAAGGTCCCATTACACATAAAATATTGACA
AGAATTAGAGAATTTCTCGTTGTACCTGTAATTCTTTACCTCATTCTTCA
GCAAAATACACCCTAGAATGGGAAAAGAattagttttcattttttgtctG
ATTTTTCTTATGTCGCTTTCAACATCGTGTGTCTTTTTAtgatgtttgtt
tacatttttgattttcatagatTATGatatattgtttaaaaattaagGAA
TAAGGGCCTGGTTTTTCAACAAAGTCCAGAAAATACTGCAAACacgaaaa
aaattaagtttttagtCTAGGCTAGGTgtttttatggttttttgaaaaca
CTGCAACACATGTGTACTGTACTTAAT
Run BLAST on NCBI

protein sequence of TCONS_00041023-protein

>TCONS_00041023-protein ID=TCONS_00041023-protein|Name=TCONS_00041023-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MNMSEEEESQTQFNFPSPKIRKVSKDDQQRESSNISQSQTSSKFINQVNV
EDLTNKDFENIARIFSNKKTLSKSAILADVTNFKQLRLDVRNMRDIHLMA
ESVGRQLVEHRMVIIGSCPVTEKDDVILIAK
Run BLAST on NCBI

transcript from alignment at sc0002668:5050..9046-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041023 ID=TCONS_00041023|Name=TCONS_00041023|organism=Clytia hemisphaerica|type=transcript|length=3997bp|location=Sequence derived from alignment at sc0002668:5050..9046- (Clytia hemisphaerica)
ATTTGGATAAGAAAGCCATCAAAGCCAAAGTTCTGTCACACATGACCGAT
AGGCGGAAAACATCAAGAAAAATTGATTTCGTATGTATTGATTTTGATTT
TCAAATTATTGTTTTCTATATTTTGCCATCTTCCTATTTTTAATTTAGGT
TATATTGGAGCTGGCTATTTTTTCTGCTTCTGACTTATTTTCTTTGTATG
TTGTTTTGTTATTACCGAATTTTTGCAATATGACCTATCTTAAGTCTGGC
TGAGTATGTGGATATCATTATTTATAAAACATTGAGTTACATTTTTAGAC
CACCAAAAAATCCAATTCAATGAAATCACCTAAGGAAATAGTCACCACAC
CACAAAAACCAAACAACAACAAGGATTTCGAGGATGAAGAAGAGTTGTAA
TTTAATTCTATCCCTCCAAAAAGATGTGTAAGAATAAATTTAAATTTAGG
CAAGGATTGAGAAGTTTTAAAAGGGTGGTTTTAAGCATACAGCTGTTCTA
GTTATATATTATTATTATATAATTATAATATTATATAAAATGCCTTTCTG
CTTTAAGGCTAATTTTAATTTTGAGAAAATTTCTTTAAATTATCTAAAAA
GAAAAAGGGTGTATTATACAATTGTTTCTTATTCCATGAAATGCCAAGTA
TGTGGATTAATAAGATATTTGTAAATAACTGAATTATATTTTTAGGCTGA
ATCTTCAAAAGAATCACCGGAGAAAATATCCACATATTCCACGTCCACTT
CCACTTCCACAAATAAAAAGTTAAACATGAACATGAGTGAGGAAGAAGAG
TCACAGACACAATTCAATTTTCCATCACCAAAAATACGTGTAAGAATAAA
TTTTTAATTTTAAACAAATAGATTGGTAATCGACAGAGCTCCAGGCTTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNAAGCAAATAACAATAGAATATCTAATTATCTCCCTTGGGTGTT
TGACCACGTATCCAAATAAAAATAACAATAATGGTAGGGAAGAAGTGTGA
AGATCAAAACATGGGAATTTTTGATGTTCTTGTTGTTTTCTTTTCAATTA
CTTTGCTTAGATATTCTTGTTTTAATCTTCTTAATGACTTGGTTGCATCG
TGTAAAGAACTAAAGGTATATCTTTCTTTTGCTTCAATTCTTCTTTTCTG
TTTGNNTTCCCTAGTAAACTAGCATCTGTTTACCTTTCAGAAAGTTAACA
AGGATGACCAACAGCGTGAAAGCAGCAACAGTAAGTTGGATTTCCTTTTT
GACAAGCAATGAAACGTTAATAAAAATCAGTCATTTTAATTATTTTAGCT
CGTGACCACTCAGGAAAAAAATGCCCAAATATCTCATGGAGAAAGAAATG
CCTTGAAAGGAACATGTGAGAACCAGATTGTTTAGACAATGTTCTCTTCT
ATTTTATTTAGTATCTCAAACTCGAACGAGCGCCAAATTTATCAACCAAG
TCAATGTAGAAGGTAAGGCGGATATTTCATAACTTGCCAAAATCCTGATA
AAATTTTTACCAGAAACGTTCAAAAACGTTCTTTTCACAGAATTTGATAT
TCTTTTAATGATATGTGAATCTTGAAAGTTTTCTAATTTTTTTGAAAGTT
CCTTCTTTTCCCCCCTCTCCCTGCTTATTCCAAACTCCCCGGCTATTAGG
CACCCGAGAGTAATAATATAATCTTTCGTTTCAGATCTGACCAACAAGGA
TTTCGAGAATATTGCAAGAATATTCAGCAACAAAAAGACCTTGTGCAAAT
CTGCAATTCTTGCAGATGTTACAAACTTTAAACAGTTGCGTTTGGACGTA
AGGAACATGAGAGACATCCACCTGATGGCTGAGAGTGTGGGGCGTCAGCT
GGTCGAACACCGCATGGTGATCATTGGGTCTTGTCCAGTTACGGAGAAAG
ATGATGTCATTCTTATTGCAAAGTAATTCTTTTTACAGCTTATTTTTAGG
GTAACAATCTTTTTTTCGGAATAAAAGTCTTTCATTTAAGTTGTGTTTTT
ATTCAGAATTAAAGGTCCCATTACACATAAAATATTGACAAGAATTAGAG
AATTTCTCGTTGTACCTGTAATTCTTTACCTCATTCTTCAGCAAAATACA
CCCTAGAATGGGAAAAGAATTAGTTTTCATTTTTTGTCTGATTTTTCTTA
TGTCGCTTTCAACATCGTGTGTCTTTTTATGATGTTTGTTTACATTTTTG
ATTTTCATAGATTATGATATATTGTTTAAAAATTAAGGAATAAGGGCCTG
GTTTTTCAACAAAGTCCAGAAAATACTGCAAACACGAAAAAAATTAAGAT
TTTAGTCTAGGCTAGGTGTTTTTATGGTTTTTTGAAAACACTGCAACACA
TGTGTACTGTACTTAATGGGAAATGTTTCTGGTACTTTCAGTGTAAATTT
AAAATNGAAGAGTCACAGACACAATTCAATTTTCCATCACCAAAAATACG
TGTAAGAATAAATTTTTAATTTTAAACAAATAGATTGGTAATCGACAGAG
CTCCAGGCTTTTAAGTTTTCCTCTTGGTCTGTAAGACTTATGCTTTGCCA
TTAATGACCCAGGGAGATTTGTAAACAATCTTCTATATTTGTTCTCTCAA
TTTTTCTTGCTTTTCTCACTTTTTAAATTGCTTTTCTCATTTTTTATCAT
TTTTATTGAAAAAAATGGCTTGGCTCTTCGATTTCCCTAGTAAACTAGCA
TCTGTTTACTTTTCAGAAAGTTAGCAAGGATGACCAACAGCGTGAAAGCA
GCAACAGTAAGTTGGATTTCCTTTTGGACAAGTAATGAAACATTGATAAA
AATCAGTCATTTTAATTCTTTAAGCTCGTGACCACTCAGGAAAATAATGC
CCAAATATCTCAGGGAGAAAGAAATGCCTCAAAAGGAACGTGTGAGAACC
AGATTGTTTAGACAATGTTCTCTTCTATTTTATTTAGTATCTCAAAGTCA
AACGAGCTCCAAATTTATCAACCAAGTCAATGTAGAAGGTAAGGCGGATA
TTTCATAACTTGCCAAAATCCTGATAAAATTTTTACCAGAAACGTTTAAA
AAAGTCTACTTTTCACAGAATTTGATATTTTTTTAATGATATGTGAATCT
TGAAAGTTTTCTAATTTTTTTTGAAAGTTCCTTCTTTTGCCCCCCTCTCC
CTGCTTATTCCAAACTCCCCGGCTATTAGGCACCCAAGAGTAATAATATA
ATCTTTCGTTTCAGATCTGACCAACAAGGATTTCGAAAATATTGCAAGAA
TATTCAGCAACAAAAAGACCTTGAGCAAATCTGCAATTCTTGCAGATGTT
ACAAACTTTAAACAGTTGCGTTTGGACGTAAGGAACATGAGAGACATCCA
CCTGATGGCTGAGAGTGTGGGGCGTCAGCTGGTCGAACACCGCATGGTGA
TCATTGGGTCTTGTCCAGTTACGGAGAAAGATGATGTCATTCTTATTGCA
AAGTAATTCTTTTTACAGCTTATTTTTAGGGTAACAATCTTTTTTTCGGA
ATAAAAGTCTTTCATTTAAGTTGTGTTTTTATTCAGAATTAAAGGTCCCA
TTACACATAAAATATTGACAAGAATTAGAGAATTTCTCGTTGTACCTGTA
ATTCTTTACCTCATTCTTCAGCAAAATACACCCTAGAATGGGAAAAGAAT
TAGTTTTCATTTTTTGTCTGATTTTTCTTATGTCGCTTTCAACATCGTGT
GTCTTTTTATGATGTTTGTTTACATTTTTGATTTTCATAGATTATGATAT
ATTGTTTAAAAATTAAGGAATAAGGGCCTGGTTTTTCAACAAAGTCCAGA
AAATACTGCAAACACGAAAAAAATTAAGTTTTTAGTCTAGGCTAGGTGTT
TTTATGGTTTTTTGAAAACACTGCAACACATGTGTACTGTACTTAAT

Coding sequence (CDS) from alignment at sc0002668:5050..9046-

>TCONS_00041023 ID=TCONS_00041023|Name=TCONS_00041023|organism=Clytia hemisphaerica|type=CDS|length=1584bp|location=Sequence derived from alignment at sc0002668:5050..9046- (Clytia hemisphaerica)
ATCTGACCAACAAGGATTTCGAAAATATTGCAAGAATATTCAGCAACAAA
AAGACCTTGAGCAAATCTGCAATTCTTGCAGATGTTACAAACTTTAAACA
GTTGCGTTTGGACGTAAGGAACATGAGAGACATCCACCTGATGGCTGAGA
GTGTGGGGCGTCAGCTGGTCGAACACCGCATGGTGATCATTGGGTCTTGT
CCAGTTACGGAGAAAGATGATGTCATTCTTATTGCAAAGTAATATCTCAA
AGTCAAACGAGCTCCAAATTTATCAACCAAGTCAATGTAGAAGAAAGTTA
GCAAGGATGACCAACAGCGTGAAAGCAGCAACAATGAACATGAGTGAGGA
AGAAGAGTCACAGACACAATTCAATTTTCCATCACCAAAAATACGTATCT
GACCAACAAGGATTTCGAAAATATTGCAAGAATATTCAGCAACAAAAAGA
CCTTGAGCAAATCTGCAATTCTTGCAGATGTTACAAACTTTAAACAGTTG
CGTTTGGACGTAAGGAACATGAGAGACATCCACCTGATGGCTGAGAGTGT
GGGGCGTCAGCTGGTCGAACACCGCATGGTGATCATTGGGTCTTGTCCAG
TTACGGAGAAAGATGATGTCATTCTTATTGCAAAGTAATATCTCAAAGTC
AAACGAGCTCCAAATTTATCAACCAAGTCAATGTAGAAGAAAGTTAGCAA
GGATGACCAACAGCGTGAAAGCAGCAACAATGAACATGAGTGAGGAAGAA
GAGTCACAGACACAATTCAATTTTCCATCACCAAAAATACGTATCTGACC
AACAAGGATTTCGAAAATATTGCAAGAATATTCAGCAACAAAAAGACCTT
GAGCAAATCTGCAATTCTTGCAGATGTTACAAACTTTAAACAGTTGCGTT
TGGACGTAAGGAACATGAGAGACATCCACCTGATGGCTGAGAGTGTGGGG
CGTCAGCTGGTCGAACACCGCATGGTGATCATTGGGTCTTGTCCAGTTAC
GGAGAAAGATGATGTCATTCTTATTGCAAAGTAATATCTCAAAGTCAAAC
GAGCTCCAAATTTATCAACCAAGTCAATGTAGAAGAAAGTTAGCAAGGAT
GACCAACAGCGTGAAAGCAGCAACAATGAACATGAGTGAGGAAGAAGAGT
CACAGACACAATTCAATTTTCCATCACCAAAAATACGTATCTGACCAACA
AGGATTTCGAAAATATTGCAAGAATATTCAGCAACAAAAAGACCTTGAGC
AAATCTGCAATTCTTGCAGATGTTACAAACTTTAAACAGTTGCGTTTGGA
CGTAAGGAACATGAGAGACATCCACCTGATGGCTGAGAGTGTGGGGCGTC
AGCTGGTCGAACACCGCATGGTGATCATTGGGTCTTGTCCAGTTACGGAG
AAAGATGATGTCATTCTTATTGCAAAGTAATATCTCAAAGTCAAACGAGC
TCCAAATTTATCAACCAAGTCAATGTAGAAGAAAGTTAGCAAGGATGACC
AACAGCGTGAAAGCAGCAACAATGAACATGAGTGAGGAAGAAGAGTCACA
GACACAATTCAATTTTCCATCACCAAAAATACGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025049XLOC_025049Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041023-exon-sc0002668-1575043694:8967..9046TCONS_00041023-exon-sc0002668-1575043694:8967..9046Clytia hemisphaericaexon
TCONS_00041023-exon-sc0002668-1575043694:8620..8748TCONS_00041023-exon-sc0002668-1575043694:8620..8748Clytia hemisphaericaexon
TCONS_00041023-exon-sc0002668-1575043694:8208..8351TCONS_00041023-exon-sc0002668-1575043694:8208..8351Clytia hemisphaericaexon
TCONS_00041023-exon-sc0002668-1575043694:6191..6230TCONS_00041023-exon-sc0002668-1575043694:6191..6230Clytia hemisphaericaexon
TCONS_00041023-exon-sc0002668-1575043694:5959..6009TCONS_00041023-exon-sc0002668-1575043694:5959..6009Clytia hemisphaericaexon
TCONS_00041023-exon-sc0002668-1575043694:5050..5732TCONS_00041023-exon-sc0002668-1575043694:5050..5732Clytia hemisphaericaexon
TCONS_00041023-exon-sc0002668-1510915933:8967..9046TCONS_00041023-exon-sc0002668-1510915933:8967..9046Clytia hemisphaericaexon
TCONS_00041023-exon-sc0002668-1510915933:8620..8748TCONS_00041023-exon-sc0002668-1510915933:8620..8748Clytia hemisphaericaexon
TCONS_00041023-exon-sc0002668-1510915933:8208..8351TCONS_00041023-exon-sc0002668-1510915933:8208..8351Clytia hemisphaericaexon
TCONS_00041023-exon-sc0002668-1510915933:6191..6230TCONS_00041023-exon-sc0002668-1510915933:6191..6230Clytia hemisphaericaexon
TCONS_00041023-exon-sc0002668-1510915933:5959..6009TCONS_00041023-exon-sc0002668-1510915933:5959..6009Clytia hemisphaericaexon
TCONS_00041023-exon-sc0002668-1510915933:5050..5732TCONS_00041023-exon-sc0002668-1510915933:5050..5732Clytia hemisphaericaexon
TCONS_00041023-exon-sc0002668-1491911889:8967..9046TCONS_00041023-exon-sc0002668-1491911889:8967..9046Clytia hemisphaericaexon
TCONS_00041023-exon-sc0002668-1491911889:8620..8748TCONS_00041023-exon-sc0002668-1491911889:8620..8748Clytia hemisphaericaexon
TCONS_00041023-exon-sc0002668-1491911889:8208..8351TCONS_00041023-exon-sc0002668-1491911889:8208..8351Clytia hemisphaericaexon
TCONS_00041023-exon-sc0002668-1491911889:6191..6230TCONS_00041023-exon-sc0002668-1491911889:6191..6230Clytia hemisphaericaexon
TCONS_00041023-exon-sc0002668-1491911889:5959..6009TCONS_00041023-exon-sc0002668-1491911889:5959..6009Clytia hemisphaericaexon
TCONS_00041023-exon-sc0002668-1491911889:5050..5732TCONS_00041023-exon-sc0002668-1491911889:5050..5732Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041023-proteinTCONS_00041023-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002668supercontigsc0002668:5050..9046 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.38225	1.65821	0.260842	0.342482	42.7883	29.57	3.62712	3.62824	1.92055	2.38002	1.25294	1.77596	0.74538	0.800777	1.77754	1.97822	1.97282	1.6355	0	1.07474	0.394739	0.814762	0.841921	0.675475	0	0.155229	0.222134	0.508994	4.63265	2.8407
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041023 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top