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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040944 ID=TCONS_00040944|Name=TCONS_00040944|organism=Clytia hemisphaerica|type=transcript|length=774bp
GAAAAGGCATCCGTCGAAATTAGTTTGATCGCTATCTCTATGACATCTCT
CGACTCACTGAATGCATttctgaccaatcagaatcaAGAGTGCGAGGTCT
CCTTAAAAGCAACCTAGTACATTCAACAGGGCTATTTGCTTCTTGTCGTG
GTGAAGGACGGTGGTTCGGGAGactcaaaattttgactttgaaactgatt
ttttcaaattaatttcacCTGCCATAACATGGCCAAACGTACGAAAAGAA
AGACAGATGGTAGAGGACCACAATGTGTTGTCTGGGTTTTATGaatCATT
CATCCTTGACGAACCGAGAATCATTGTATTGGCACCATAGAGAGCTTTGA
AGATTGCTGCTTCAACAACAGATTATGATATACTgaaatctgTTCATCAA
ACGACGGCGATATTCAAATACTCTGGAAGCATTTTATACGTTTTTTCTTG
TTAGACTTCGAAGCGAAACGTATGGTACAACCTGTGGAATCTCTTCTGTG
GTCTTTTGGGAAAACGGTGCGGATTAGCACTGTATAGCAGAAAGAATGTA
GAGCTCAGTTAACCATGATTGATGTTGATGCAGAAGATCGTCACTGAAGA
TTGATGCAGGACACGTCAGTGACGCCACAATGCTTGTGCTTATTTTATAC
TTATAAGGTAATAAATAAAGTCtccgtcataaattttgaatcCCCCTCAG
ATCCGCCAGTATGTATTGCGCTTACTTCTATAGCTTTTTTAGACCACTTG
CAAAGAATTTTTCATCTGAAAAAC Run BLAST on NCBI transcript from alignment at sc0002637:3416..7974- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040944 ID=TCONS_00040944|Name=TCONS_00040944|organism=Clytia hemisphaerica|type=transcript|length=4559bp|location=Sequence derived from alignment at sc0002637:3416..7974- (Clytia hemisphaerica)
GAAAAGGCATCCGTCGAAATTAGTTTGATCGCTATCTCTATGACATCTCT
CGACTCACTGAATGCATTTCTGACCAATCAGAATCAAGAGTGCGAGGTCT
CCTTAAAAGCAACCTAGTACATTCAACAGGGCTATTTGCTTCTTGTCGTG
GTGAAGGACGGTGGTTCGGGAGACTCAAAATTTTGACTTTGAAACTGATT
TTTTCAAATTAATTTCACCTGCCATAACATGGCCAAACGTACGAAAAGAA
AGACAGATGGTAGAGGACCACAATGTGTTGTCTGGGTTTTATGGTATGTA
TTTCTTGTTTCAATCTGGTGATTTTACGTGTTTGAAAAGTTTAAAAGGCT
ATTTTAGTGTTTTTAAGCTGTAGATTTTGCTATATTTAAGAGATCGTTTT
TCTCACAACAAGGCAATCTGCGACTTTTATCACAGTGTTTTGATTTGCGC
ACTCAATCTTGTTGTTTACTTGAGAAATCGTGTCTTTCTCATACATTATA
AAAAAAATGTCTCTTGAAACACAATTCCTTAGGAAATTTTAATTCTTTGT
ATACGGCAGTTTTAGAAACATTGTTCAATTAATTCTCTGTCAGGTAGTCA
AAATTAGCTTGTAATGGCAAGATAATGTGTTGCATTGTGATGCTGTACAT
CAATTGAGTATTTTGTGAAGTTAGATTTTTCAGTACCGTGAATGTTGATC
GAAGAATTATATGAGTTATATGATGTATACAATTAAAGAATGATATTCTG
TGTGCTTTGAAGTTTATATATATTTTTTGTTGGCCTTGAAAATACAAACT
TAATGGTTCCTGGTTGACATTACACACGAATGAACCATTATAGGGATTAA
AGTAACTAACGATGAAGATTGTCATCTCACTTCTAAAACATTTATCTTTT
GTTTCAAATTTTCATTGCAACTCTCTTTGAAAGAATTAATTATCATTTCT
GAGCAGTGACATCGAGTAACAGTTTTATTGCATTTCTGTTTTTATTTATG
ATTGGAACTGCACATTTTCAGGTTTGTACCGAATTAAGCAAATGGTCAGA
CAGTTAAAAAGATTTGAGAGAAAGGATTTCTGGTCGGATTGTCGGAATCG
TTTGTTTTGGTTGTGATTTTTTATGAATTCTTGTTCAAGTTTTCTTGAAA
TGTCAATTTCAGGTTTATTGTGGATATGTTGTAAGGCCTTTGGATGTTTT
TAATTTAAAATTTTTAACCTTGAAAGTATTCTCGGTATGTTTTTACTTTC
AACAATATGGGAGTATTTTTGTACATGTTCCCAAGATATATTTGGATTCG
GCAAGGCGTTGAAATGTTCTTACTACTCTGTCTGTCCTGTATCATGCTTG
AAATTTGAAAACTTTTTCGAAATAAATCCTTACACAATTTTTTTTTGATT
TTATATCTTTTCTTATAGCTCTTTATTTTTATTTTCCAGAATCATTCATC
CTTGACGAACCGAGAATCATTGTATTGGCACCATAGAGAGCTTTGAAGAT
TGCTGCTTCAACAACAGATTATGATATACTGTAAGTTTATATACCCCTGG
ATTTATCTGTTTTTCGGGACCAATTAATGATATTCTGATGGACGTTTGAT
TAAAGAGATTCCTGCATAAAAAATCCATGAATAGCTATAATGAAAATCGT
TTACAAAATTAAAGTCAAAGTTGTCAACAATGATTCTATCCTAAGATATT
GACATCAGAAGTTCCAAATTCAAGACATCTGCACTCTGTGGAAGCCATAT
TGAAATAATAATTTTAAAGTTTAATTTCAAACTCTCTGGTATCCTTTATC
CATACTAGGTAAAGATTAGAGAATTGGATAAAAAATTAAATGACTTTTTA
TGGTATACAAAACCTCTAAATGTCATGTGTCATGTGTCAATCATACAAAA
ATCATTTAGTTCAACTTCGGGTATCCTTCTAGTCTGCTCTCAATTATTTT
AGTATGATGACTAGCTGGTATGAACAGAAGTTTTCCAAATNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTGTGACAAAAAAAATTAACTCCCCTAAATAATGACTCCCCAGTCAT
AATAAACTAGTAAATAGTGACTCCCCACCTCAAAATAAACTAGTAAATGA
AGACTCCGTAGAGTTGCTATTTGCTAGGAAATCTTGACCCCCTTTGGTTT
AAAATGACTCCCCTCTATTATCTATGACAAAATTATTTAAAAATTCATTT
GGCTATCCAGGGCTAACTCTACAGACTCTAAGAGAAATACTCCATCTGAG
GGAAGCATTTCCTTCAAGAATTTTTAGATTTGGCTCGAAATTTGTATACT
GTATACTTCCCTCTTTGTAAGATCATGTTACAAAATACCGGCGAGAAATC
GAATGAGGAATAAACGTTTAAACTTCATGTCTACCGACAATTACGTGAAA
AATCTGTTCTANNGTTTAAAATCTGAAAAACAGGGGACAATAGAAATCAA
CGAGAGAATGCGCTTGTCACAGTGATCTTTTAGAAGAAATATTTACAGTA
ATCCCAATGTGATGAATGTTAGCTACAGTACGTCCATAAAAAATTAGTCC
TTCGTCTTTGAAGTGGTATACCTTTTCGAATTTTTGGCCAATTTTGAAAA
TTCTTCCACAGTGAGATGGAGCATCAGGCTTTCCAAAAATATAACTTTTC
AAAAAAAGCTTCACAACATAAAGGAAAATCGAAGATTTAAGCAATGCTAC
AGTTCAGTGGCTCCGTAATCATCANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
TTTTTCTATCGAAGGCTATGGCACTTTTAAAACAGAGGACTAATTTCTCC
TGGACGTACTGTATAAATAAAAAGACAACTTTGGTAAAAACTGTAACAAA
CAGAACACGCGGGTATAAAACAAAGGAACGTACAAAAGTTTTTCTTTAAG
GACCTTAAAATGATACCTGGAAGATCTATTAGAAAGGCGAAGGAAGAATA
TCTTGTAAAGACATTCAAATACGAATGCTAAAGGGCCCTTATGTATGGAT
ATATATAGTAAAGTAGTGTGAACAAACAATGACTACTTTGGGGGGGGGTC
ATGATCTTGACTCCCTCAGCTTTTTTAAGGGGAGTCATTATTTACTAAGG
GAGTCAATATTTCCTAGGAAATTTCTACTCTAGGGAAGTCATTATTTCCT
AGTTTATATTAACTGGGGGGGTCAACATTTACAGGGAGTTAAAATAATCC
GCTACCACACCGGAATCCTTTTAAATACCTTTCAGCCCTACTTGGAAATT
AACTTTTGTTTCATCCCTTCGAAATTCAACGTTTAAAAATTGCATTTCGA
AATCATTGCCACTGAATTTGCTAACCTTGAAACAAAGGAATTTCTATCCC
CATTGGGATTTTAATAGGAGTAGGAATTATCTCCACTGAGAAGAAAAGTT
CCACCGGGGCTGTGAAACAGGGGTGTCTATGTCATTCTTTTAAGTTTTAA
AGATTGTTCAGCTTTGATTGTCTATGTTAATTATTTTAAAAACCGATTTA
TTCTCTCGTTTTTTTTCAGGAAATCTGTTCATCAAACGACGGCGATATTC
AAATACTCTGGAAGCATTTTATACGTTTTTTCTTGTTAGACTTCGAAGCG
AAACGTATGGTACAACCTGTGGAATCTCTTCTGTGGTCTTTTGGGAAAAC
GGTGCGGATTAGCACTGTATAGCAGAAAGAATGTAGAGCTCAGTTAACCA
TGATTGATGTTGATGCAGAAGATCGTCACTGAAGATTGATGCAGGACACG
TCAGTGACGCCACAATGCTTGTGCTTATTTTATACTTATAAGGTAATAAA
TAAAGTCTCCGTCATAAATTTTGAATCCCCCTCAGATCCGCCAGTATGTA
TTGCGCTTACTTCTATAGCTTTTTTAGACCACTTGCAAAGAATTTTTCAT
CTGAAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040944-exon-sc0002637-1575043694:7682..7974 | TCONS_00040944-exon-sc0002637-1575043694:7682..7974 | Clytia hemisphaerica | exon |
| TCONS_00040944-exon-sc0002637-1575043694:6445..6535 | TCONS_00040944-exon-sc0002637-1575043694:6445..6535 | Clytia hemisphaerica | exon |
| TCONS_00040944-exon-sc0002637-1575043694:3416..3805 | TCONS_00040944-exon-sc0002637-1575043694:3416..3805 | Clytia hemisphaerica | exon |
| TCONS_00040944-exon-sc0002637-1510915933:7682..7974 | TCONS_00040944-exon-sc0002637-1510915933:7682..7974 | Clytia hemisphaerica | exon |
| TCONS_00040944-exon-sc0002637-1510915933:6445..6535 | TCONS_00040944-exon-sc0002637-1510915933:6445..6535 | Clytia hemisphaerica | exon |
| TCONS_00040944-exon-sc0002637-1510915933:3416..3805 | TCONS_00040944-exon-sc0002637-1510915933:3416..3805 | Clytia hemisphaerica | exon |
| TCONS_00040944-exon-sc0002637-1491911889:7682..7974 | TCONS_00040944-exon-sc0002637-1491911889:7682..7974 | Clytia hemisphaerica | exon |
| TCONS_00040944-exon-sc0002637-1491911889:6445..6535 | TCONS_00040944-exon-sc0002637-1491911889:6445..6535 | Clytia hemisphaerica | exon |
| TCONS_00040944-exon-sc0002637-1491911889:3416..3805 | TCONS_00040944-exon-sc0002637-1491911889:3416..3805 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002637 | supercontig | sc0002637:3416..7974 - |
Blast
The following BLAST results are available for this feature:
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