TCONS_00040928 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040928
Unique NameTCONS_00040928
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1480

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040928 ID=TCONS_00040928|Name=TCONS_00040928|organism=Clytia hemisphaerica|type=transcript|length=1480bp
gttTGTTAAAGTAGACATATTTGTTGAGAGAAttcttctttgaatttctt
ctatCTAAAGATGGAAAGCTATAATCATGATATAGAGTTGTTGTTTGTTA
TTTTAGGAcattaaaacatcaatttagaaatttttaagattCAAATTCTT
GCTAATATTTTTAATCTTAGAtaaagaatttttgaaagatttgagctacc
caatttcaagaaagaagaagaatccTAAAAATATCGAAGACATCATTGAT
GGAGAGATTTACAAAAAGCATTTTGGTTTTGATGGCTTTTTACATGGTAC
ACCCCAAGCTTNTTTTTAATTTTAGAtaaagaatttttgaaagatttgag
ctacccaatttcaagaaagaagaagaatccTAAAAATATCGAAGACATCA
TTGATGGAGAGATTTACAAAAAGCATTTTGGTTTTGATGGCTTTTTACAT
GGTACACCCCAAGCTTCcaagaagaaagaaattcatATTTCGCTTCAATG
TAACACCGATGGTGTATCTCTTTTCAAATCGTCCAAAATGGAAATATGGC
CCATCTATTACACAATTAACGAACTTCACCCAACATTACGATATCGAAGA
AAGTATCGATTATTTGCTGGGCTTTggttttcagacaaaaaaacaaactt
caaaacttttcttAAGCCATTTGTTGAAGAACTAAAGGAATTTAGTACAT
CAGGAAAACTGATAATGACAGAAAAAGGTGAGAAACTgttaaaagttctt
cttttttctgGTATCTTTGATGCACCTGCGAAAAGCATGTTCCAGAATGT
TGTACAATTCAATGGGTTATACGGCTGCTCTTACTGCTTGGAACCTGGAG
AAACCTGTAAAGCTGGTAAAGGCCACGTTCATGCTTTTCCTTTTAATTTT
GACGAAAAATCAGGACATACTAAACTAAGCTCTCATAACGATACCATTAG
TCATGCAAAGAAAGCCCAGAAAAGTATTATTGAGACCGGAAACATAGTTC
CAGAAAAAGGTATGAAAGGATTATCTTGGTCAATGAGCCTTCCATGCTAC
AATGTTGGCAATGGTCTAGGTTTGGATTATCTCCATAATACGCTTCTGGG
TGTGGTGAAAATGATGATGCAATTGTGGTTCAACAATAAGTACAAAAATA
TGCCTTGGTTCATCGGTAACCATGTTAATGAAGTCGATAAATGCATTGTA
CAACTGAGACTTCCTAACCTAATCAGCAGAATACCAAGAAACATTGAAAA
GgatttcaaacattttaaagGTTCAGAATTTCGGACATTTTTGTTATTCT
ATTCCGCTCCAATTTTATACAATTTTCTTCCAGATGAGTATTTCCAGCAC
TATATTCTTTTGGTAGAATCAATTTATTTGTTGCTGAAAGATTCTATCTC
CCCAATTGATCTTGAAAATGCAGATAAGATGTTGCGTCATTTCTGCTGCA
AAATTCCTAGATTGTATGGATACCGATATC
Run BLAST on NCBI

transcript from alignment at sc0002626:2954..5998-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040928 ID=TCONS_00040928|Name=TCONS_00040928|organism=Clytia hemisphaerica|type=transcript|length=3045bp|location=Sequence derived from alignment at sc0002626:2954..5998- (Clytia hemisphaerica)
GTTTGTTAAAGTAGACATATTTGTTGAGAGAATTCTTCTTTGAATTTCTT
CTATCTAAAGATGGAAAGCTATAATCATGATATAGAGTTGTTGTTTGTTA
TTTTAGGACATTAAAACATCAATTTAGAAATTTTTAAGATTCAAATTCTT
GCTAATATTTTTAATCTTAGATAAAGAATTTTTGAAAGATTTGAGCTACC
CAATTTCAAGAAAGAAGAAGAATCCTAAAAATATCGAAGACATCATTGAT
GGAGAGATTTACAAAAAGCATTTTGGTTTTGATGGCTTTTTACATGGTAC
ACCCCAAGCTTNTTTTTAATTTTAGATAAAGAATTTTTGAAAGATTTGAG
CTACCCAATTTCAAGAAAGAAGAAGAATCCTAAAAATATCGAAGACATCA
TTGATGGAGAGATTTACAAAAAGCATTTTGGTTTTGATGGCTTTTTACAT
GGTACACCCCAAGCTTCCAAGAAGAAAGAAATTCATATTTCGCTTCAATG
TAACACCGATGGTGTATCTCTTTTCAAATCGTCCAAAATGGAAATATGGC
CCATCTATTACACAATTAACGAACTTCACCCAACATTACGGTAATGATCA
AATTTTAGGGGTAAAACTCCTAATATTCAATTGAAATGAAGGGCAAGTTT
GTAACAAGACACACCTTCAAATTAAATCTATTCATTGAAAATGAAGGTTT
TCTCAATGACTAATGATCAAATTTTTATGACATACTCTTTGTAAAGGTGC
TTAGCCTTAAAGATAATTTTCTTTATGATATACAGACAAGGCAGATACTT
GTGCTGATACAGCAGATTCAAGAAAATAATGTTTTCGAGTCCCACAAGAA
CAAGGGAAGAAAATTTTTGTTTTTTTTGTTTCAAAAGGCTGAGTAAGCAA
ATGATAGAAGATACATACAAACATTATCTTAAAAGCTTTCAGAACCTATT
GAATCGTAAGAACCTGTTTGTTAGCAGTTTTTATTTCAAGTTATTATGAG
ACAATAAAAGCCTGTCTAAAATCTAAATAAGAAACTTTTAATTTACTCCT
TAATAATAGGTTTTAAATTGTTTTTTGTATATGGTTCTGTTTTTAGATAT
CGAAGAAAGTATCGATTATTTGCTGGGCTTTGGTTTTCAGACAAAAAAAC
AAACTTCAAAACTTTTCTTAAGCCATTTGTTGAAGAACTAAAGGAATTTA
GTACATCAGGTAAGTTTGTCACTATTTTTCTTTGCTATTTTTAAATTTCA
ATAGGTCTACATGTTTTTTTTTTTATAAGCAAGTGTATGCCCCTTGGTCA
GGCTCGTGTATGCTTAAGTTCTCAAAGCATCCAGGCATAGATTATGCTTA
TTATATGCTTATGAATCATGCTTATAATTCACCCCGAGTCAAGGTTTAGT
GAAATCTTAGAAATTTTGTAAAAATTGTAAAAATTTGTTCTGATTTGGGA
GCAGTGGTAGCCGTGGAATGTCTTTTTTTACTTGACCTCAACCAAACCAT
TTTAAACTGATAAAAAATGACAACTTGAAAAATATTTCAGGCTGACACAT
ATGCTTATGTTATGCTTAGGAATTATACAAATCTGAGCCTTCATATGCTT
ATAAAAAAAAAACATTTATCCGCAAAATTCAAAAATTTCATGGGGACTTA
ATTCGCGGGTGGAACTATTGGGTGGCAATATTTTCACGATTTTGTGACTT
TTACTGTCAAATCTTGCATGTTGGTTGTTGTAATACACATTATTTGCACC
TCTTTGATGCAAGTAATCATTATTCAAAAAGTATTTATTTGACATATTTG
GAGTTTTGTTTATAAATATTTCGCGGATGAGGCCCTCCCTTCTAAATTTT
CATTGAGACTTAATTTTGCTTAAAATTATACGTGGAAATAATAACTTTTC
ATCAGGAATTTATGTTTTATTCACCCAGTCAAATATTCTGTTATATACAT
TTTTAGTACTAAACCCATTTTTAAAATCATGGGGCTAAGCAATTACTCTT
AACACTACATACAGTACAGAGAGTAATTTGCTCAACAAATTAAATATATC
CACAGCACAGAGAAAACTGCCAAATTTGTTGGATTTCAAAGGTTTCCCAC
AGTTTGAAAAATCCTTAGCTGAAAAGGCTGAAAAGCATTCATCACTTTGC
TACAGTATTTGTTGAAAAGTGGTGTTGCAAAGCAGGTGTTGCACATGATG
ATGACACGCTTAGAGCTGCCTGTGGAAATTTAATGTTCTAATTATACCTC
TCCCATCTCTTTTCACAGGAAAACTGATAATGACAGAAAAAGGTGAGAAA
CTGTTAAAAGTTCTTCTTTTTTCTGGTATCTTTGATGCACCTGCGAAAAG
CATGTTCCAGAATGTTGTACAATTCAATGGGTTATACGGCTGCTCTTACT
GCTTGGAACCTGGAGAAACCTGTAAAGCTGGTAAAGGCCACGTTCATGCT
TTTCCTTTTAATTTTGACGAAAAATCAGGACATACTAAACTAAGCTCTCA
TAACGATACCATTAGTCATGCAAAGAAAGCCCAGAAAAGTATTATTGAGA
CCGGAAACATAGTTCCAGAAAAAGGTATGAAAGGATTATCTTGGTCAATG
AGCCTTCCATGCTACAATGTTGGCAATGGTCTAGGTTTGGATTATCTCCA
TAATACGCTTCTGGGTGTGGTGAAAATGATGATGCAATTGTGGTTCAACA
ATAAGTACAAAAATATGCCTTGGTTCATCGGTAACCATGTTAATGAAGTC
GATAAATGCATTGTACAACTGAGACTTCCTAACCTAATCAGCAGAATACC
AAGAAACATTGAAAAGGATTTCAAACATTTTAAAGGTTCAGAATTTCGGA
CATTTTTGTTATTCTATTCCGCTCCAATTTTATACAATTTTCTTCCAGAT
GAGTATTTCCAGCACTATATTCTTTTGGTAGAATCAATTTATTTGTTGCT
GAAAGATTCTATCTCCCCAATTGATCTTGAAAATGCAGATAAGATGTTGC
GTCATTTCTGCTGCAAAATTCCTAGATTGTATGGATACCGATATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024980XLOC_024980Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040928-exon-sc0002626-1575043694:5409..5998TCONS_00040928-exon-sc0002626-1575043694:5409..5998Clytia hemisphaericaexon
TCONS_00040928-exon-sc0002626-1575043694:4790..4902TCONS_00040928-exon-sc0002626-1575043694:4790..4902Clytia hemisphaericaexon
TCONS_00040928-exon-sc0002626-1575043694:2954..3730TCONS_00040928-exon-sc0002626-1575043694:2954..3730Clytia hemisphaericaexon
TCONS_00040928-exon-sc0002626-1510915933:5409..5998TCONS_00040928-exon-sc0002626-1510915933:5409..5998Clytia hemisphaericaexon
TCONS_00040928-exon-sc0002626-1510915933:4790..4902TCONS_00040928-exon-sc0002626-1510915933:4790..4902Clytia hemisphaericaexon
TCONS_00040928-exon-sc0002626-1510915933:2954..3730TCONS_00040928-exon-sc0002626-1510915933:2954..3730Clytia hemisphaericaexon
TCONS_00040928-exon-sc0002626-1491911889:5409..5998TCONS_00040928-exon-sc0002626-1491911889:5409..5998Clytia hemisphaericaexon
TCONS_00040928-exon-sc0002626-1491911889:4790..4902TCONS_00040928-exon-sc0002626-1491911889:4790..4902Clytia hemisphaericaexon
TCONS_00040928-exon-sc0002626-1491911889:2954..3730TCONS_00040928-exon-sc0002626-1491911889:2954..3730Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002626supercontigsc0002626:2954..5998 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0.221935	0	0.265999	0	0	0	0	0	0	0	0	0	0	0	0	0	0.0802404	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040928 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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