TCONS_00040789 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040789
Unique NameTCONS_00040789
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length583

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040789 ID=TCONS_00040789|Name=TCONS_00040789|organism=Clytia hemisphaerica|type=transcript|length=583bp
ATGAGTAAAATTGTTGAAACTCCATTGAACCATTTCGTTTAAGTTATCAT
CACATTCAGTCTCTTCAAAATTAAAGTACCCTtgcttcttttcaatattt
tcattagtgTCCTTATTTCCACCACCACTACATTTGTGTTTGTCATAGAA
GTCTTGTCTTGAGAACTGCCTTTCACATGTGCTGCATTTCAACTCCTTCT
TTAATTTTGCATGTACATTCTTAATGTGTCGTTTCAGATGCCACACTTTG
GGAAATACTTTGCTGCATTGACTGCATTCTAGTGACTCTTTCTGTTTGCA
CTTGTGACTTTTCAGATACCAAGATCTTGCAAACGATTTGAAACATACTG
GGCATTTAACTGAGGATGATAAACCACAATTCAATTTATGATTCTGTAAA
CTTTGTCTGTGCTTAAATTGTTTATTGCAACCAAGATTCTTACAAATCCA
AATTTCTGCTTTTTTCATATTAGACTATTTTTTTAATCTAAAGATATAAA
ATGAGACTGAATTACTAGATTACTGAAGAAATACAGCTATTCAACCAAAG
ATAAAATCTTGTCCTTTGACATTTCAATTTGCC
Run BLAST on NCBI

protein sequence of TCONS_00040789-protein

>TCONS_00040789-protein ID=TCONS_00040789-protein|Name=TCONS_00040789-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MKKAEIWICKNLGCNKQFKHRQSLQNHKLNCGLSSSVKCPVCFKSFARSW
YLKSHKCKQKESLECSQCSKVFPKVWHLKRHIKNVHAKLKKELKCSTCER
QFSRQDFYDKHKCSGGGNKDTNENIEKKQGYFNFEETECDDNLNEMVQWS
FNNFTH
Run BLAST on NCBI

transcript from alignment at sc0002560:11236..11818

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040789 ID=TCONS_00040789|Name=TCONS_00040789|organism=Clytia hemisphaerica|type=transcript|length=583bp|location=Sequence derived from alignment at sc0002560:11236..11818 (Clytia hemisphaerica)
GGCAAATTGAAATGTCAAAGGACAAGATTTTATCTTTGGTTGAATAGCTG
TATTTCTTCAGTAATCTAGTAATTCAGTCTCATTTTATATCTTTAGATTA
AAAAAATAGTCTAATATGAAAAAAGCAGAAATTTGGATTTGTAAGAATCT
TGGTTGCAATAAACAATTTAAGCACAGACAAAGTTTACAGAATCATAAAT
TGAATTGTGGTTTATCATCCTCAGTTAAATGCCCAGTATGTTTCAAATCG
TTTGCAAGATCTTGGTATCTGAAAAGTCACAAGTGCAAACAGAAAGAGTC
ACTAGAATGCAGTCAATGCAGCAAAGTATTTCCCAAAGTGTGGCATCTGA
AACGACACATTAAGAATGTACATGCAAAATTAAAGAAGGAGTTGAAATGC
AGCACATGTGAAAGGCAGTTCTCAAGACAAGACTTCTATGACAAACACAA
ATGTAGTGGTGGTGGAAATAAGGAcactaatgaaaatattgaaaagaagc
aAGGGTACTTTAATTTTGAAGAGACTGAATGTGATGATAACTTAAACGAA
ATGGTTCAATGGAGTTTCAACAATTTTACTCAT

Coding sequence (CDS) from alignment at sc0002560:11236..11818

>TCONS_00040789 ID=TCONS_00040789|Name=TCONS_00040789|organism=Clytia hemisphaerica|type=CDS|length=468bp|location=Sequence derived from alignment at sc0002560:11236..11818 (Clytia hemisphaerica)
ATGAAAAAAGCAGAAATTTGGATTTGTAAGAATCTTGGTTGCAATAAACA
ATTTAAGCACAGACAAAGTTTACAGAATCATAAATTGAATTGTGGTTTAT
CATCCTCAGTTAAATGCCCAGTATGTTTCAAATCGTTTGCAAGATCTTGG
TATCTGAAAAGTCACAAGTGCAAACAGAAAGAGTCACTAGAATGCAGTCA
ATGCAGCAAAGTATTTCCCAAAGTGTGGCATCTGAAACGACACATTAAGA
ATGTACATGCAAAATTAAAGAAGGAGTTGAAATGCAGCACATGTGAAAGG
CAGTTCTCAAGACAAGACTTCTATGACAAACACAAATGTAGTGGTGGTGG
AAATAAGGAcactaatgaaaatattgaaaagaagcaAGGGTACTTTAATT
TTGAAGAGACTGAATGTGATGATAACTTAAACGAAATGGTTCAATGGAGT
TTCAACAATTTTACTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024863XLOC_024863Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040789-exon-sc0002560-1491911889:11236..11818TCONS_00040789-exon-sc0002560-1491911889:11236..11818Clytia hemisphaericaexon
TCONS_00040789-exon-sc0002560-1510915933:11236..11818TCONS_00040789-exon-sc0002560-1510915933:11236..11818Clytia hemisphaericaexon
TCONS_00040789-exon-sc0002560-1575043694:11236..11818TCONS_00040789-exon-sc0002560-1575043694:11236..11818Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040789-proteinTCONS_00040789-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002560supercontigsc0002560:11236..11818 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.189721	0.370015	0.717387	0.603012	0.511698	0.27035	0.731747	0.228351	0.462082	0.495074	0.0961062	0.315882	0.473521	0.786217	0.0538648	0	0	0	0.201677	0	0.115768	0	0	0	0.540308	1.52141	0.260145	0.138817	0.105288	0.0109656
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040789 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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