TCONS_00040636 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040636
Unique NameTCONS_00040636
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length796

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040636 ID=TCONS_00040636|Name=TCONS_00040636|organism=Clytia hemisphaerica|type=transcript|length=796bp
ttcaattttgatattttgcgcCGGTAAATATCGGTCATGCTATATAATGC
TTCGATAAAGATGGTAGAGTAAGCTACATTCATCCTTTTACATCCAACAG
CCGAAGGCAAAGGTAAGCTCTAAGACCACGAAGGCAATATCTATCTATAT
CTTGGTCATCCGACCACTACATCAAGTAATTTTTGAATCCAAACGCGATG
ATGACAACACAGTTATCACAGTCATTCATTGAACTGGTGAAGGAAGAAAG
CACTACATCATTGGTGACGGACTTCACAGTTTATGAAAATATGACGTTTT
TAGTAAATATGGTTGGAATACTATTAACGTATcatattttctttaaagac
AACCTAAGGTTTCAACATGGTTAGAATCAGCGTGTTAAATGACTGCCTTA
AAAGCATGGTCAATGCTGAACGAAGAGGAAAACGACAAGTCTTAATCAGA
CCAGCATCAAAAGTTGTCATGAAATTCTTAACTGTCATGATGAAACATGG
ATACATTGGCGAATTTGAATACATTGATGACCACAGAGCTGGAAAGATTG
TTGTCAACCTTAATGGAAGAATTAACAAGTGTGGTGTTATTTCCCCACGA
TTTGATGTCAAATTGAAGGATATTGAAAAATGGTCTAGTTACTTGTTGCC
ATCTCGTCAGTTTGGATTTATCGTAATGACCACATCAGCTGGAATCATGG
ATCATGAGGAAGCCAGGAGGAAAAACACTGGTGGAAAAATTTTAGGATAT
TTCTACTAGAAGaattctgaaaaataaagatcattttgttgttgtt
Run BLAST on NCBI

protein sequence of TCONS_00040636-protein

>TCONS_00040636-protein ID=TCONS_00040636-protein|Name=TCONS_00040636-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
MVRISVLNDCLKSMVNAERRGKRQVLIRPASKVVMKFLTVMMKHGYIGEF
EYIDDHRAGKIVVNLNGRINKCGVISPRFDVKLKDIEKWSSYLLPSRQFG
FIVMTTSAGIMDHEEARRKNTGGKILGYFY
Run BLAST on NCBI

transcript from alignment at sc0002504:17241..19930+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040636 ID=TCONS_00040636|Name=TCONS_00040636|organism=Clytia hemisphaerica|type=transcript|length=2690bp|location=Sequence derived from alignment at sc0002504:17241..19930+ (Clytia hemisphaerica)
ttcaattttgatattttgcgcCGGTAAATATCGGTCATGCTATATAATGC
TTCGATAAAGATGGTAGAGTAAGCTACATTCATCCTTTTACATCCAACAG
CCGAAGGCAAAGGTAAGCTCTAAGACCACGAAGGCAATATCTATCTATAT
CTTGGTCATCCGACCACTACATCAAGTAATTTTTGAATCCAAACGCGATG
ATGACAACACAGGTATTGATAGTTCCTGAATTTCAGTGACGAAATACCCC
TTGGCTGTCTGAGCATTCATTTTAATTCTTTGGAATAAGGAGTAGCTGTT
GATTTTTGTGtcattgatttttctaaaaactgCTGATACTATCATTTAGT
TATCACAGTCATTCATTGAACTGGTGAAGGAAGAAAGCACTACATCATTG
GTGACGGACTTCACAGTTTATGAAAATATGACGTTTTTAGTAAATATGGT
TGGAATACTATTAACGTATcatattttctttaaagacAACCTAAGGTTTC
AACATGGTTAGAATCAGCGTGTTAAATGACTGCCTTAAAAGCATGGTCAA
TGCTGAACGAAGAGGAAAACGACAAGTCTTAATCAGACCAGCATCAAAAG
TTGTCATGAAATTCTTAACTGTCATGATGAAACATGGTAAGCTGAGTTTT
TATACTGAGGCAAAAATAACAAATATAGTGTTTCTGGTAATTGACCGGGT
GAACAAAAGATATTTTCTGACCCAGCCGCAGATCAAGTTTTGATCGTAAG
TAGTtcatacattagtattcagggcttactttatactgtttgtacataaa
agatCTTTGAAGtttatttcaatgatcttaaaaaCAGCATAGAAAATGTT
TTCTGGCCGGTTGCATGACAGCTTTGTTCCTTCACCCACATTTTGGAAac
actacacttttttattttcgcctgatTAACTTTTTTTACATTGACTTTAG
TTACATACTTTCTTATGATGAATTTAGCATATTCTGACACCTCTTGTCCG
AGGCTTTTTGCCAGTGAACAGAACCAGCTACTTATGCCTGAGGAAAGTGA
TATTGCTTTTATATTTGACTCCAGTAACTAAATAAATACAGCTTGTTTGG
CCTGTAGATTCGTCCTGtgttaggggtcactcacaaatcgaGTTAAGGTT
AGAAAAACGCCAATTGACGTTAGTGGGTGGTTAGATTAAAGGTTGTTTTA
AATCAAGAACATCAATTTTTATTCTTGTCGTGTTTCTGTTTAATCGCTTT
GtctgttttgaaaaccaaaacaaacagcccTATGTTcatgtcttttcttt
gtttgacgACCCAAACGGCCCTTGAATCTAACCTAAAATAGATTTGTGAT
TGACCCCTTATCCCATCATATTTACCATTGATATTTTGAAGTTAGCAGCT
TTTGTGGCTAATTGCATTTAAGGCCAGTTTCAACTTGCATGTGCTGTGAT
TGCACCTCTTGGATTGCTCCTTTTCGTTTGGAAAAATGATTTTAGCATAA
ATGGATccataaaaaattaaatttccaatTGATATGTTAGATCTCGTCAA
tgagattgttttgtttttcttttgacccATAGTGTGGAAACTGTACTCAA
AAAGTGTGATAAAGTTCTAGTTATATATTTGCATAAGACATAAAATACCT
GATCTCGCAAATTCTATGTAAAATTTACAGGGCACATAAGTGGAGACTGG
TCTTAAGTGATGGCTATCTGCAATTCAAGAGGGCTAATGCCAAATTATTT
CTCAAACCTAccttaaaagtttttgtttaacACATTTTTGTTCTCTACTT
TTTTTGTCACTAGTAATGTAAATGTAACAAAGTCTTTCTTTTTATAGAGG
ATCAGTAGTGATGACTTGCACTGGGTTATGAATTGAATGATTCGCTCAAG
CATGACTGAACTGATCTAAACAAATCTAGTTTTGCAATCAATGGATCCTT
TCCATTTATAAAatgtaatttgaaatttgttcttttttcaattaGGATAC
ATTGGCGAATTTGAATACATTGATGACCACAGAGCTGGAAAGATTGTTGT
CAACCTTAATGGAAGAATTAACAAGGTATCTTGAGAAAACTTGTAAATTT
CATGTAAACTAAATTTCAATGATGACCTACAAGTAAAAGACTAGAGTCTC
AGAAAATCATGTTGAGACGTCCTTGCACAACTGACGAAATTGATCAGCTT
TAAATGCACATAGTTAGCTACAGTAGGTGAACAGTCTtataaaacaatat
ttttccatttcacAGTGTGGTGTTATTTCCCCACGATTTGATGTCAAATT
GAAGGATATTGAAAAATGGTCTAGTTACTTGTTGCCATCTCGTCAGTTTG
GGTAAGTCTTGTTGCTTTCACAATTCCTCCTggttttgaattgatttttt
aattaaatgcTAAGCACAATGATGAAATGGGTAAATGCCAGTTCTGCTGC
TGATACGTGATGTGGAACTTACCCTCAATATCTGAGTAGCTTTAGAACTT
TCATGCCTAATAAAATATACATTTTGACATATTTTAACCTTGTCTCTCTT
TCTTAACAGATTTATCGTAATGACCACATCAGCTGGAATCATGGATCATG
AGGAAGCCAGGAGGAAAAACACTGGTGGAAAAATTTTAGGATATTTCTAC
TAGAAGaattctgaaaaataaagatcattttgttgttgtt

Coding sequence (CDS) from alignment at sc0002504:17241..19930+

>TCONS_00040636 ID=TCONS_00040636|Name=TCONS_00040636|organism=Clytia hemisphaerica|type=CDS|length=1572bp|location=Sequence derived from alignment at sc0002504:17241..19930+ (Clytia hemisphaerica)
ATGGTTAGAATCAGCGTGTTAAATGACTGCCTTAAAAGCATGGTCAATGC
TGAACGAAGAGGAAAACGACAAGTCTTAATCAGACCAGCATCAAAAGTTG
TCATGAAATTCTTAACTGTCATGATGAAACATGGATACATTGGCGAATTT
GAATACATTGATGACCACAGAGCTGGAAAGATTGTTGTCAACCTTAATGG
AAGAATTAACAAGTGTGGTGTTATTTCCCCACGATTTGATGTCAAATTGA
AGGATATTGAAAAATGGTCTAGTTACTTGTTGCCATCTCGTCAGTTTGGA
TTTATCGTAATGACCACATCAGCTGGAATCATGGATCATGAGGAAGCCAG
GAGGAAAAACACTGGTGGAAAAATTTTAGGATATTTCTACTAGATGGTTA
GAATCAGCGTGTTAAATGACTGCCTTAAAAGCATGGTCAATGCTGAACGA
AGAGGAAAACGACAAGTCTTAATCAGACCAGCATCAAAAGTTGTCATGAA
ATTCTTAACTGTCATGATGAAACATGGATACATTGGCGAATTTGAATACA
TTGATGACCACAGAGCTGGAAAGATTGTTGTCAACCTTAATGGAAGAATT
AACAAGTGTGGTGTTATTTCCCCACGATTTGATGTCAAATTGAAGGATAT
TGAAAAATGGTCTAGTTACTTGTTGCCATCTCGTCAGTTTGGATTTATCG
TAATGACCACATCAGCTGGAATCATGGATCATGAGGAAGCCAGGAGGAAA
AACACTGGTGGAAAAATTTTAGGATATTTCTACTAGATGGTTAGAATCAG
CGTGTTAAATGACTGCCTTAAAAGCATGGTCAATGCTGAACGAAGAGGAA
AACGACAAGTCTTAATCAGACCAGCATCAAAAGTTGTCATGAAATTCTTA
ACTGTCATGATGAAACATGGATACATTGGCGAATTTGAATACATTGATGA
CCACAGAGCTGGAAAGATTGTTGTCAACCTTAATGGAAGAATTAACAAGT
GTGGTGTTATTTCCCCACGATTTGATGTCAAATTGAAGGATATTGAAAAA
TGGTCTAGTTACTTGTTGCCATCTCGTCAGTTTGGATTTATCGTAATGAC
CACATCAGCTGGAATCATGGATCATGAGGAAGCCAGGAGGAAAAACACTG
GTGGAAAAATTTTAGGATATTTCTACTAGATGGTTAGAATCAGCGTGTTA
AATGACTGCCTTAAAAGCATGGTCAATGCTGAACGAAGAGGAAAACGACA
AGTCTTAATCAGACCAGCATCAAAAGTTGTCATGAAATTCTTAACTGTCA
TGATGAAACATGGATACATTGGCGAATTTGAATACATTGATGACCACAGA
GCTGGAAAGATTGTTGTCAACCTTAATGGAAGAATTAACAAGTGTGGTGT
TATTTCCCCACGATTTGATGTCAAATTGAAGGATATTGAAAAATGGTCTA
GTTACTTGTTGCCATCTCGTCAGTTTGGATTTATCGTAATGACCACATCA
GCTGGAATCATGGATCATGAGGAAGCCAGGAGGAAAAACACTGGTGGAAA
AATTTTAGGATATTTCTACTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024745XLOC_024745Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040636-exon-sc0002504-1491911889:17241..17452TCONS_00040636-exon-sc0002504-1491911889:17241..17452Clytia hemisphaericaexon
TCONS_00040636-exon-sc0002504-1510915933:17241..17452TCONS_00040636-exon-sc0002504-1510915933:17241..17452Clytia hemisphaericaexon
TCONS_00040636-exon-sc0002504-1575043694:17241..17452TCONS_00040636-exon-sc0002504-1575043694:17241..17452Clytia hemisphaericaexon
TCONS_00040636-exon-sc0002504-1491911889:17590..17876TCONS_00040636-exon-sc0002504-1491911889:17590..17876Clytia hemisphaericaexon
TCONS_00040636-exon-sc0002504-1510915933:17590..17876TCONS_00040636-exon-sc0002504-1510915933:17590..17876Clytia hemisphaericaexon
TCONS_00040636-exon-sc0002504-1575043694:17590..17876TCONS_00040636-exon-sc0002504-1575043694:17590..17876Clytia hemisphaericaexon
TCONS_00040636-exon-sc0002504-1491911889:19236..19315TCONS_00040636-exon-sc0002504-1491911889:19236..19315Clytia hemisphaericaexon
TCONS_00040636-exon-sc0002504-1510915933:19236..19315TCONS_00040636-exon-sc0002504-1510915933:19236..19315Clytia hemisphaericaexon
TCONS_00040636-exon-sc0002504-1575043694:19236..19315TCONS_00040636-exon-sc0002504-1575043694:19236..19315Clytia hemisphaericaexon
TCONS_00040636-exon-sc0002504-1491911889:19506..19591TCONS_00040636-exon-sc0002504-1491911889:19506..19591Clytia hemisphaericaexon
TCONS_00040636-exon-sc0002504-1510915933:19506..19591TCONS_00040636-exon-sc0002504-1510915933:19506..19591Clytia hemisphaericaexon
TCONS_00040636-exon-sc0002504-1575043694:19506..19591TCONS_00040636-exon-sc0002504-1575043694:19506..19591Clytia hemisphaericaexon
TCONS_00040636-exon-sc0002504-1491911889:19800..19930TCONS_00040636-exon-sc0002504-1491911889:19800..19930Clytia hemisphaericaexon
TCONS_00040636-exon-sc0002504-1510915933:19800..19930TCONS_00040636-exon-sc0002504-1510915933:19800..19930Clytia hemisphaericaexon
TCONS_00040636-exon-sc0002504-1575043694:19800..19930TCONS_00040636-exon-sc0002504-1575043694:19800..19930Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040636-proteinTCONS_00040636-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002504supercontigsc0002504:17241..19930 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.620362	0	0	0	0	2.68906	0	0	0	0	0	0	0	0	0	1.15171	0	1.57094	0	1.54087	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000630Ribosomal_S8
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
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BLAST of TCONS_00040636 vs. Swiss-Prot (Human)
Match: RS15A (40S ribosomal protein S15a OS=Homo sapiens GN=RPS15A PE=1 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 1.249e-75
Identity = 107/130 (82.31%), Postives = 122/130 (93.85%), Query Frame = 1 
Query:  367 MVRISVLNDCLKSMVNAERRGKRQVLIRPASKVVMKFLTVMMKHGYIGEFEYIDDHRAGKIVVNLNGRINKCGVISPRFDVKLKDIEKWSSYLLPSRQFGFIVMTTSAGIMDHEEARRKNTGGKILGYFY 756
            MVR++VL D LKS+ NAE+RGKRQVLIRP SKV+++FLTVMMKHGYIGEFE IDDHRAGKIVVNL GR+NKCGVISPRFDV+LKD+EKW + LLPSRQFGFIV+TTSAGIMDHEEARRK+TGGKILG+F+
Sbjct:    1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
The following BLAST results are available for this feature:
BLAST of TCONS_00040636 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS15A1.249e-7582.3140S ribosomal protein S15a OS=Homo sapiens GN=RPS1... [more]
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