TCONS_00040636-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00040636-protein
Unique NameTCONS_00040636-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length130

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00040636-protein ID=TCONS_00040636-protein|Name=TCONS_00040636-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
MVRISVLNDCLKSMVNAERRGKRQVLIRPASKVVMKFLTVMMKHGYIGEF
EYIDDHRAGKIVVNLNGRINKCGVISPRFDVKLKDIEKWSSYLLPSRQFG
FIVMTTSAGIMDHEEARRKNTGGKILGYFY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_024745XLOC_024745Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00040636TCONS_00040636Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000630Ribosomal_S8
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.1490.10coord: 70..128
e-value: 2.5E-28
score: 97.1
NoneNo IPR availableGENE3D3.30.1370.30coord: 1..69
e-value: 5.7E-29
score: 99.4
IPR000630Ribosomal protein S8PFAMPF00410Ribosomal_S8coord: 7..130
e-value: 2.2E-21
score: 76.1
IPR000630Ribosomal protein S8HAMAPMF_01302_ARibosomal_S8_Acoord: 2..130
score: 31.826
IPR000630Ribosomal protein S8SUPERFAMILY56047Ribosomal protein S8coord: 4..130

Blast
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BLAST of TCONS_00040636-protein vs. Swiss-Prot (Human)
Match: RS15A (40S ribosomal protein S15a OS=Homo sapiens GN=RPS15A PE=1 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 2.019e-79
Identity = 107/130 (82.31%), Postives = 122/130 (93.85%), Query Frame = 0 
Query:    1 MVRISVLNDCLKSMVNAERRGKRQVLIRPASKVVMKFLTVMMKHGYIGEFEYIDDHRAGKIVVNLNGRINKCGVISPRFDVKLKDIEKWSSYLLPSRQFGFIVMTTSAGIMDHEEARRKNTGGKILGYFY 130
            MVR++VL D LKS+ NAE+RGKRQVLIRP SKV+++FLTVMMKHGYIGEFE IDDHRAGKIVVNL GR+NKCGVISPRFDV+LKD+EKW + LLPSRQFGFIV+TTSAGIMDHEEARRK+TGGKILG+F+
Sbjct:    1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130
The following BLAST results are available for this feature:
BLAST of TCONS_00040636-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS15A2.019e-7982.3140S ribosomal protein S15a OS=Homo sapiens GN=RPS1... [more]
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