TCONS_00040634 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00040634
Unique Name	TCONS_00040634
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1315

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0002504:16486..19930+

transcript sequence

>TCONS_00040634 ID=TCONS_00040634|Name=TCONS_00040634|organism=Clytia hemisphaerica|type=transcript|length=1315bp
aaaactattcaggaacttagacctttttacagaatttcaaaaaatctgtt
agttctggagatatattgaaaagtttagacatgggtagtttgcgtttgtg
tttcgcgttcccaaaccaaacgcacgtgtgtgatagattgtagcctaatc
ttaccctgggtttactaaaaaaaccgcgattgagaagatgaaccagctca
atagcgacagccatttgtttcaatgtgggtcgagaattttccggtgccgt
ggtcagcgctaaatcgcgttttcaccttgacgtcgaaaaacatgaatatt
tttggaaagaaaatagataccttgatgcagttttttttacttgtttccct
gataattcttgattgatttaaaaaaaaagaatgaccgatttggatgattt
aaaggtaagtactaatgcattgaagttcatttttgtaaattcttcctcgt
tccgcgcaaaaaatcccgacgagtgcgcacgcTATCTGTGACCTGACTGT
GTGCATGTCTGGTGGGTATTATATATTTCATTTgtgaataaaatttgaaa
aatgttttggttcaacctccttaaataaaaaaatacaccAACAACTTACA
ATTTAAAAGCTCTTGAGTCTCTTTGCTGACAGAACATTTTGCAGAATTGA
ACATTGCTCCATTTTTGGCCGCCATCTTGATTTCCGATGCTGTGATTTGT
TTTCGAAtttcggaaaatcgggaaatgtAGTACACTCTGTATTTTGCCGA
ACGAGttcaattttgatattttgcgcCGGTAAATATCGGTCATGCTATAT
AATGCTTCGATAAAGATGGTAGAGTAAGCTACATTCATCCTTTTACATCC
AACAGCCGAAGGCAAAGacAACCTAAGGTTTCAACATGGTTAGAATCAGC
GTGTTAAATGACTGCCTTAAAAGCATGGTCAATGCTGAACGAAGAGGAAA
ACGACAAGTCTTAATCAGACCAGCATCAAAAGTTGTCATGAAATTCTTAA
CTGTCATGATGAAACATGGATACATTGGCGAATTTGAATACATTGATGAC
CACAGAGCTGGAAAGATTGTTGTCAACCTTAATGGAAGAATTAACAAGTG
TGGTGTTATTTCCCCACGATTTGATGTCAAATTGAAGGATATTGAAAAAT
GGTCTAGTTACTTGTTGCCATCTCGTCAGTTTGGATTTATCGTAATGACC
ACATCAGCTGGAATCATGGATCATGAGGAAGCCAGGAGGAAAAACACTGG
TGGAAAAATTTTAGGATATTTCTACTAGAAGaattctgaaaaataaagat
cattttgttgttgtt

Run BLAST on NCBI

transcript from alignment at sc0002504:16486..19930+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00040634 ID=TCONS_00040634|Name=TCONS_00040634|organism=Clytia hemisphaerica|type=transcript|length=3445bp|location=Sequence derived from alignment at sc0002504:16486..19930+ (Clytia hemisphaerica)
aaaactattcaggaacttagacctttttacagaatttcaaaaaatctgtt
agttctggagatatattgaaaagtttagacatgggtagtttgcgtttgtg
tttcgcgttcccaaaccaaacgcacgtgtgtgatagattgtagcctaatc
ttaccctgggtttactaaaaaaaccgcgattgagaagatgaaccagctca
atagcgacagccatttgtttcaatgtgggtcgagaattttccggtgccgt
ggtcagcgctaaatcgcgttttcaccttgacgtcgaaaaacatgaatatt
tttggaaagaaaatagataccttgatgcagttttttttacttgtttccct
gataattcttgattgatttaaaaaaaaagaatgaccgatttggatgattt
aaaggtaagtactaatgcattgaagttcatttttgtaaattcttcctcgt
tccgcgcaaaaaatcccgacgagtgcgcacgcTATCTGTGACCTGACTGT
GTGCATGTCTGGTGGGTATTATATATTTCATTTgtgaataaaatttgaaa
aatgttttggttcaacctccttaaataaaaaaatacaccAACAACTTACA
ATTTAAAAGCTCTTGAGTCTCTTTGCTGACAGAACATTTTGCAGAATTGA
ACATTGCTCCATTTTTGGCCGCCATCTTGATTTCCGATGCTGTGATTTGT
TTTCGAAtttcggaaaatcgggaaatgtAGTACACTCTGTATTTTGCCGA
ACGAGttcaattttgatattttgcgcCGGTAAATATCGGTCATGCTATAT
AATGCTTCGATAAAGATGGTAGAGTAAGCTACATTCATCCTTTTACATCC
AACAGCCGAAGGCAAAGGTAAGCTCTAAGACCACGAAGGCAATATCTATC
TATATCTTGGTCATCCGACCACTACATCAAGTAATTTTTGAATCCAAACG
CGATGATGACAACACAGGTATTGATAGTTCCTGAATTTCAGTGACGAAAT
ACCCCTTGGCTGTCTGAGCATTCATTTTAATTCTTTGGAATAAGGAGTAG
CTGTTGATTTTTGTGtcattgatttttctaaaaactgCTGATACTATCAT
TTAGTTATCACAGTCATTCATTGAACTGGTGAAGGAAGAAAGCACTACAT
CATTGGTGACGGACTTCACAGTTTATGAAAATATGACGTTTTTAGTAAAT
ATGGTTGGAATACTATTAACGTATcatattttctttaaagacAACCTAAG
GTTTCAACATGGTTAGAATCAGCGTGTTAAATGACTGCCTTAAAAGCATG
GTCAATGCTGAACGAAGAGGAAAACGACAAGTCTTAATCAGACCAGCATC
AAAAGTTGTCATGAAATTCTTAACTGTCATGATGAAACATGGTAAGCTGA
GTTTTTATACTGAGGCAAAAATAACAAATATAGTGTTTCTGGTAATTGAC
CGGGTGAACAAAAGATATTTTCTGACCCAGCCGCAGATCAAGTTTTGATC
GTAAGTAGTtcatacattagtattcagggcttactttatactgtttgtac
ataaaagatCTTTGAAGtttatttcaatgatcttaaaaaCAGCATAGAAA
ATGTTTTCTGGCCGGTTGCATGACAGCTTTGTTCCTTCACCCACATTTTG
GAAacactacacttttttattttcgcctgatTAACTTTTTTTACATTGAC
TTTAGTTACATACTTTCTTATGATGAATTTAGCATATTCTGACACCTCTT
GTCCGAGGCTTTTTGCCAGTGAACAGAACCAGCTACTTATGCCTGAGGAA
AGTGATATTGCTTTTATATTTGACTCCAGTAACTAAATAAATACAGCTTG
TTTGGCCTGTAGATTCGTCCTGtgttaggggtcactcacaaatcgaGTTA
AGGTTAGAAAAACGCCAATTGACGTTAGTGGGTGGTTAGATTAAAGGTTG
TTTTAAATCAAGAACATCAATTTTTATTCTTGTCGTGTTTCTGTTTAATC
GCTTTGtctgttttgaaaaccaaaacaaacagcccTATGTTcatgtcttt
tctttgtttgacgACCCAAACGGCCCTTGAATCTAACCTAAAATAGATTT
GTGATTGACCCCTTATCCCATCATATTTACCATTGATATTTTGAAGTTAG
CAGCTTTTGTGGCTAATTGCATTTAAGGCCAGTTTCAACTTGCATGTGCT
GTGATTGCACCTCTTGGATTGCTCCTTTTCGTTTGGAAAAATGATTTTAG
CATAAATGGATccataaaaaattaaatttccaatTGATATGTTAGATCTC
GTCAAtgagattgttttgtttttcttttgacccATAGTGTGGAAACTGTA
CTCAAAAAGTGTGATAAAGTTCTAGTTATATATTTGCATAAGACATAAAA
TACCTGATCTCGCAAATTCTATGTAAAATTTACAGGGCACATAAGTGGAG
ACTGGTCTTAAGTGATGGCTATCTGCAATTCAAGAGGGCTAATGCCAAAT
TATTTCTCAAACCTAccttaaaagtttttgtttaacACATTTTTGTTCTC
TACTTTTTTTGTCACTAGTAATGTAAATGTAACAAAGTCTTTCTTTTTAT
AGAGGATCAGTAGTGATGACTTGCACTGGGTTATGAATTGAATGATTCGC
TCAAGCATGACTGAACTGATCTAAACAAATCTAGTTTTGCAATCAATGGA
TCCTTTCCATTTATAAAatgtaatttgaaatttgttcttttttcaattaG
GATACATTGGCGAATTTGAATACATTGATGACCACAGAGCTGGAAAGATT
GTTGTCAACCTTAATGGAAGAATTAACAAGGTATCTTGAGAAAACTTGTA
AATTTCATGTAAACTAAATTTCAATGATGACCTACAAGTAAAAGACTAGA
GTCTCAGAAAATCATGTTGAGACGTCCTTGCACAACTGACGAAATTGATC
AGCTTTAAATGCACATAGTTAGCTACAGTAGGTGAACAGTCTtataaaac
aatatttttccatttcacAGTGTGGTGTTATTTCCCCACGATTTGATGTC
AAATTGAAGGATATTGAAAAATGGTCTAGTTACTTGTTGCCATCTCGTCA
GTTTGGGTAAGTCTTGTTGCTTTCACAATTCCTCCTggttttgaattgat
tttttaattaaatgcTAAGCACAATGATGAAATGGGTAAATGCCAGTTCT
GCTGCTGATACGTGATGTGGAACTTACCCTCAATATCTGAGTAGCTTTAG
AACTTTCATGCCTAATAAAATATACATTTTGACATATTTTAACCTTGTCT
CTCTTTCTTAACAGATTTATCGTAATGACCACATCAGCTGGAATCATGGA
TCATGAGGAAGCCAGGAGGAAAAACACTGGTGGAAAAATTTTAGGATATT
TCTACTAGAAGaattctgaaaaataaagatcattttgttgttgtt

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_024745	XLOC_024745	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0002504	supercontig	sc0002504:16486..19930 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
95.2195	89.054	114.437	116.47	19.9962	18.1023	13.6663	15.6144	117.636	110.161	139.429	146.228	164.466	138.58	115.009	117.041	118.588	128.907	61.7277	70.6198	149.363	142.649	120.942	105.51	11.8292	12.1382	155.156	144.477	101.63	107.534

Blast

[Close]

BLAST of TCONS_00040634 vs. Swiss-Prot (Human)
Match: RS15A (40S ribosomal protein S15a OS=Homo sapiens GN=RPS15A PE=1 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 2.454e-73
Identity = 107/130 (82.31%), Postives = 122/130 (93.85%), Query Frame = 1

Query:  886 MVRISVLNDCLKSMVNAERRGKRQVLIRPASKVVMKFLTVMMKHGYIGEFEYIDDHRAGKIVVNLNGRINKCGVISPRFDVKLKDIEKWSSYLLPSRQFGFIVMTTSAGIMDHEEARRKNTGGKILGYFY 1275
            MVR++VL D LKS+ NAE+RGKRQVLIRP SKV+++FLTVMMKHGYIGEFE IDDHRAGKIVVNL GR+NKCGVISPRFDV+LKD+EKW + LLPSRQFGFIV+TTSAGIMDHEEARRK+TGGKILG+F+
Sbjct:    1 MVRMNVLADALKSINNAEKRGKRQVLIRPCSKVIVRFLTVMMKHGYIGEFEIIDDHRAGKIVVNLTGRLNKCGVISPRFDVQLKDLEKWQNNLLPSRQFGFIVLTTSAGIMDHEEARRKHTGGKILGFFF 130

The following BLAST results are available for this feature:

BLAST of TCONS_00040634 vs. Swiss-Prot (Human)

BLAST of TCONS_00040634 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RS15A	2.454e-73	82.31	40S ribosomal protein S15a OS=Homo sapiens GN=RPS1...	[more]

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TCONS_00040634 (transcript) - C. hemisphaerica