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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040546 ID=TCONS_00040546|Name=TCONS_00040546|organism=Clytia hemisphaerica|type=transcript|length=2193bp
AAGAGTAAGTGTaattaaaattctttgaattccCCAAATATCCAAGTAAT
CTGACACATATTGAAAGTGATAAAAGGCTCAGCCATCACTGAGAGGATAA
TGGGTCATAACTAAGTTACTCATTTCACTTCGAGATACAGGAACTAGCTG
GTATAGCCATAGATTCTTGTTTTGCTCGTTGTTTTGTCAGATCAGAATAG
AAAGAAACAATAGGTTAAGCCCCCAGGGCTAACCGTTCCACAATACTTAT
TACCTGTGGTAATATGTTTTCTCTTTTATGTCACAGGATTGCCAACAAAG
AGAAACAGGCAGCTGGCTCAAGTAAGAGAAGTGCTGACGTCCTGGGAGAA
GATGAACTTGAAGGGCCAAGAGCTAAAGTGTCTTGTCTAGAACTTTTTGA
AGAGGACAATGCAATAAACTTAAGATCAGATCTAGCGGATCAAATAAACA
ACTACATTCGCAGACATGTCTCGGACAAAATTCTAAAAGAGAAGATTTTG
GAAGACTATCCGATTCCATCTAACATAGACAAACCTCAGAAATTGGATAT
GTTTATGAAGGACACTTTAacctcttacaaagcatttgCTATGGCGAGAG
ATAGCCAATTGTATAACATTCAGTCTGGTATACATAAGATTTTTGGACCA
CTGGCCAATCTTTGGGAATTGGCTGAGGAGGACAAGAAAGACCTGCTTTC
TAAGGAGGATGTCCCAGACGAGGTGAAGGAAAAGATGGAGGAAATGTGCC
GTTCCTTTACCAATGTTATTGCACTTGTCGGACAGGCGTCGAACAAAGTT
GCATATTATAGACGTTTAAACATGGTTGAAAATATGACAGGCGACTCTAA
GAGAGCCAAGTAACTTCtaagtgaaaatgaagaagttttcaatgaaaaat
cttGCAACCTTTTTGGTGAAAAGTTTGAGGATCTCATTGACAAGTTAGcc
aaatccaaaaagaaatcaaaagatgcATTGTCTAATCTTGCATCACCCAA
GCCGGTATCCAAGAAGCCCTTTCACAGGAGCTCTCTATCAAATGCAGATC
AAGGAGGAGATAGGGGGCGTGGAAACCGAGGTGCCTTCAGTGGTTGGTTG
GCCAGGAGTCAGTCATCCTTCAACAAAAGAGGTAAGCCATCCTCCTTCAA
ATCTTCTGGAAATTCTACCAATGGGGAAATTTCCAAATGTTCTCCCAGCA
ATAAAGGGGCTTTTTCCAAAGGAGATCCCTCAAACACCATTAGCAGGAAG
GACAAAGTTCTTCCTGGAAAACTGGAAGAAACTAACAAGCGATCAGATTT
TATTAGAGATGGTGAGCGGGTACAGAATCCCTTTTCTAGAAAACCCTCCC
CCAGTTTTGAGACAAAACCCTTACGTTTCTCAAGTAAGTCAGGACATGAG
GGAATTAATCCAGGAAGAGGTGAAAAGTATGTTGCTCAAAGGGGCAATCG
TGACAGTGACACCATCACCAGAACAGTTTGTCAGCCCTCTATTTTTGGTG
CCAAAGAAAGACCAGGGGCAAAGGCCAGTGATAAACCTGAAAAACTTGAA
CAAATTTATTCCATACGAACACTTCAAGATGGAGGGATTATTTTTAGTGA
AGGAAATTCTGAAGCAGGGGGACTGGATGTTAAAAATCGATCTCAAGGAT
GCATATTTCGCCATACCTTTAGATCAGCATTCTCAGAGGTTTGTGAGATT
CGAATGGGACAAGACCCTATACCAATTCCAGTGTCTCTGTTTCGGTTTAT
CTCCAGCTCCAAgagtgttttcaaaaattctgaagGTTCCAATTTCACTT
CTGAGGAGATTAGGGAttcgtttaatcatatttctgGACGATATCCTGCT
AATAGCCTCGACTCCAGAGGAGTTGAGACAGATGAGGGACACAACTATTT
TCCTTTTGCAAAGTCTTGGGTTTCTAATAAATGTCAAGAAGTCAGTTTTC
GAACCAACCCAAAAGATAGAATTCTTGGGGATGATAATAGACTCAATCAA
AATGACTCTAAGCCTTCCAGAAGAGAAGGTGGTTGCCATAAAGAAGCAAT
GCTCAGAAATGTTAGAAAAGGAAAAGGTTCCCCTGAGGGAGTTATCGAAA
CTAGTGGGCAGGTTGTCTGCCTCAATGCTAGCAATATTACCAGCACCCCT
TCAATACAGGAGCCTTCAACGACAACAGATTTCAGAGTTGAAG Run BLAST on NCBI transcript from alignment at sc0002463:5142..7334+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040546 ID=TCONS_00040546|Name=TCONS_00040546|organism=Clytia hemisphaerica|type=transcript|length=2193bp|location=Sequence derived from alignment at sc0002463:5142..7334+ (Clytia hemisphaerica)
AAGAGTAAGTGTaattaaaattctttgaattccCCAAATATCCAAGTAAT
CTGACACATATTGAAAGTGATAAAAGGCTCAGCCATCACTGAGAGGATAA
TGGGTCATAACTAAGTTACTCATTTCACTTCGAGATACAGGAACTAGCTG
GTATAGCCATAGATTCTTGTTTTGCTCGTTGTTTTGTCAGATCAGAATAG
AAAGAAACAATAGGTTAAGCCCCCAGGGCTAACCGTTCCACAATACTTAT
TACCTGTGGTAATATGTTTTCTCTTTTATGTCACAGGATTGCCAACAAAG
AGAAACAGGCAGCTGGCTCAAGTAAGAGAAGTGCTGACGTCCTGGGAGAA
GATGAACTTGAAGGGCCAAGAGCTAAAGTGTCTTGTCTAGAACTTTTTGA
AGAGGACAATGCAATAAACTTAAGATCAGATCTAGCGGATCAAATAAACA
ACTACATTCGCAGACATGTCTCGGACAAAATTCTAAAAGAGAAGATTTTG
GAAGACTATCCGATTCCATCTAACATAGACAAACCTCAGAAATTGGATAT
GTTTATGAAGGACACTTTAacctcttacaaagcatttgCTATGGCGAGAG
ATAGCCAATTGTATAACATTCAGTCTGGTATACATAAGATTTTTGGACCA
CTGGCCAATCTTTGGGAATTGGCTGAGGAGGACAAGAAAGACCTGCTTTC
TAAGGAGGATGTCCCAGACGAGGTGAAGGAAAAGATGGAGGAAATGTGCC
GTTCCTTTACCAATGTTATTGCACTTGTCGGACAGGCGTCGAACAAAGTT
GCATATTATAGACGTTTAAACATGGTTGAAAATATGACAGGCGACTCTAA
GAGAGCCAAGTAACTTCtaagtgaaaatgaagaagttttcaatgaaaaat
cttGCAACCTTTTTGGTGAAAAGTTTGAGGATCTCATTGACAAGTTAGcc
aaatccaaaaagaaatcaaaagatgcATTGTCTAATCTTGCATCACCCAA
GCCGGTATCCAAGAAGCCCTTTCACAGGAGCTCTCTATCAAATGCAGATC
AAGGAGGAGATAGGGGGCGTGGAAACCGAGGTGCCTTCAGTGGTTGGTTG
GCCAGGAGTCAGTCATCCTTCAACAAAAGAGGTAAGCCATCCTCCTTCAA
ATCTTCTGGAAATTCTACCAATGGGGAAATTTCCAAATGTTCTCCCAGCA
ATAAAGGGGCTTTTTCCAAAGGAGATCCCTCAAACACCATTAGCAGGAAG
GACAAAGTTCTTCCTGGAAAACTGGAAGAAACTAACAAGCGATCAGATTT
TATTAGAGATGGTGAGCGGGTACAGAATCCCTTTTCTAGAAAACCCTCCC
CCAGTTTTGAGACAAAACCCTTACGTTTCTCAAGTAAGTCAGGACATGAG
GGAATTAATCCAGGAAGAGGTGAAAAGTATGTTGCTCAAAGGGGCAATCG
TGACAGTGACACCATCACCAGAACAGTTTGTCAGCCCTCTATTTTTGGTG
CCAAAGAAAGACCAGGGGCAAAGGCCAGTGATAAACCTGAAAAACTTGAA
CAAATTTATTCCATACGAACACTTCAAGATGGAGGGATTATTTTTAGTGA
AGGAAATTCTGAAGCAGGGGGACTGGATGTTAAAAATCGATCTCAAGGAT
GCATATTTCGCCATACCTTTAGATCAGCATTCTCAGAGGTTTGTGAGATT
CGAATGGGACAAGACCCTATACCAATTCCAGTGTCTCTGTTTCGGTTTAT
CTCCAGCTCCAAgagtgttttcaaaaattctgaagGTTCCAATTTCACTT
CTGAGGAGATTAGGGAttcgtttaatcatatttctgGACGATATCCTGCT
AATAGCCTCGACTCCAGAGGAGTTGAGACAGATGAGGGACACAACTATTT
TCCTTTTGCAAAGTCTTGGGTTTCTAATAAATGTCAAGAAGTCAGTTTTC
GAACCAACCCAAAAGATAGAATTCTTGGGGATGATAATAGACTCAATCAA
AATGACTCTAAGCCTTCCAGAAGAGAAGGTGGTTGCCATAAAGAAGCAAT
GCTCAGAAATGTTAGAAAAGGAAAAGGTTCCCCTGAGGGAGTTATCGAAA
CTAGTGGGCAGGTTGTCTGCCTCAATGCTAGCAATATTACCAGCACCCCT
TCAATACAGGAGCCTTCAACGACAACAGATTTCAGAGTTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040546-exon-sc0002463-1491911889:5142..7334 | TCONS_00040546-exon-sc0002463-1491911889:5142..7334 | Clytia hemisphaerica | exon |
| TCONS_00040546-exon-sc0002463-1510915933:5142..7334 | TCONS_00040546-exon-sc0002463-1510915933:5142..7334 | Clytia hemisphaerica | exon |
| TCONS_00040546-exon-sc0002463-1575043694:5142..7334 | TCONS_00040546-exon-sc0002463-1575043694:5142..7334 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002463 | supercontig | sc0002463:5142..7334 + |
Blast
The following BLAST results are available for this feature:
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