TCONS_00040473 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040473
Unique NameTCONS_00040473
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length433

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040473 ID=TCONS_00040473|Name=TCONS_00040473|organism=Clytia hemisphaerica|type=transcript|length=433bp
GTTTCTGGCAAACTGTCATGGGAGGTCAAAACCTTTAATGAATCATACAT
AATTCATTTTATGTATGATATCCCCTATGATTTGGGGTTCAAGGAGCATA
ACCAACTGGCTATTGCTCTCTGCTCATCAAACGACAGCCTTTGCCGGGAA
CTTTCCCGATCGGATTTGAAATCGAAGACGTACTCTTTCTCCAAACGTCG
GCTTTACAGATATACCATCGAAGATGTGTCTGTTTGTAACCAGGATTTAT
GCGTCTTCGCTAAGATGGGTACTGGACACAAAGCCACAGCCAAAATCAGA
GTCTTCCCAACGCGAGAAGAAGATGCCGCTacgaaaataaaggaaaaatt
gCAACATGATTCCTTTGGAAATCAAGAATATGATAATTTTTTGGAAGACG
AAAAAGATTCGTCCAACCGAACCTCCAGAGCTG
Run BLAST on NCBI

transcript from alignment at sc0002439:13591..14023-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040473 ID=TCONS_00040473|Name=TCONS_00040473|organism=Clytia hemisphaerica|type=transcript|length=433bp|location=Sequence derived from alignment at sc0002439:13591..14023- (Clytia hemisphaerica)
GTTTCTGGCAAACTGTCATGGGAGGTCAAAACCTTTAATGAATCATACAT
AATTCATTTTATGTATGATATCCCCTATGATTTGGGGTTCAAGGAGCATA
ACCAACTGGCTATTGCTCTCTGCTCATCAAACGACAGCCTTTGCCGGGAA
CTTTCCCGATCGGATTTGAAATCGAAGACGTACTCTTTCTCCAAACGTCG
GCTTTACAGATATACCATCGAAGATGTGTCTGTTTGTAACCAGGATTTAT
GCGTCTTCGCTAAGATGGGTACTGGACACAAAGCCACAGCCAAAATCAGA
GTCTTCCCAACGCGAGAAGAAGATGCCGCTACGAAAATAAAGGAAAAATT
GCAACATGATTCCTTTGGAAATCAAGAATATGATAATTTTTTGGAAGACG
AAAAAGATTCGTCCAACCGAACCTCCAGAGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024609XLOC_024609Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040473-exon-sc0002439-1575043694:13591..14023TCONS_00040473-exon-sc0002439-1575043694:13591..14023Clytia hemisphaericaexon
TCONS_00040473-exon-sc0002439-1510915933:13591..14023TCONS_00040473-exon-sc0002439-1510915933:13591..14023Clytia hemisphaericaexon
TCONS_00040473-exon-sc0002439-1491911889:13591..14023TCONS_00040473-exon-sc0002439-1491911889:13591..14023Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002439supercontigsc0002439:13591..14023 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.030292	0.121947	0.492518	1.52892	0	0	0	0	0.955922	1.52788	0	0.952752	1.44308	1.62564	0.538566	1.23239	2.45199	1.885	4.60251	1.88359	3.8682	2.77731	6.82489	14.1133	16.0569	24.9149	34.8708	50.9726	0	0.90982
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040473 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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