TCONS_00040450 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040450
Unique NameTCONS_00040450
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length619

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040450 ID=TCONS_00040450|Name=TCONS_00040450|organism=Clytia hemisphaerica|type=transcript|length=619bp
AGAATCGAATTGAATTTCATAGTGGCCATCGACTTCACTGCGTCGAACGG
TGAACCAAACAGACCAGACTCTTTACATTATAACACGCAAAACCAACCAA
GTCAATACGTACAAGCTCTCGATGCGATCGGTGGCGTGCTGGAAGACTAT
GACACgGATAAACGATTCCCAGCGTACGGTTTCGGTGCCAAAATTCCACC
TTCTCAAACGGTGTTGCATGATTTCGCATTGAATTTCAATCCGCAAAATC
CATTTTGTCAAGGCGTTCAAAACATCATTGGGGCGTACTATCATTCAATC
AGAAGTGTCCAACTCTATGGTCCAACGAATTTCTCGCCGGTCATCAACAA
CACAATaagAATCGCTCAACAAAATCCACAAGGAAAACAATATTTCGTGT
TGATGATCTTGACAGATGGAATTATCACAGATATGAATCAAACGAAGGAA
GCCATCGTCAACgCTGCCAACCTTCCTATCTCCATCATCATCGTAGGAGT
GGGAACTGCTGACTTCTCAGGTAACAGCTTTATGAaaagtgttaaaagtt
cttcgGTCTCAGAGAAGTATTTAAAGAGGCTTTTCAGTTGTCACCAAAGC
CTCAAGAATATGTgtaatt
Run BLAST on NCBI

protein sequence of TCONS_00040450-protein

>TCONS_00040450-protein ID=TCONS_00040450-protein|Name=TCONS_00040450-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
RIELNFIVAIDFTASNGEPNRPDSLHYNTQNQPSQYVQALDAIGGVLEDY
DTDKRFPAYGFGAKIPPSQTVLHDFALNFNPQNPFCQGVQNIIGAYYHSI
RSVQLYGPTNFSPVINNTIRIAQQNPQGKQYFVLMILTDGIITDMNQTKE
AIVNAANLPISIIIVGVGTADFSGNSFMKSVKSSSVSEKYLKRLFSCHQS
LKNMCN
Run BLAST on NCBI

transcript from alignment at sc0002434:32086..35946-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040450 ID=TCONS_00040450|Name=TCONS_00040450|organism=Clytia hemisphaerica|type=transcript|length=3861bp|location=Sequence derived from alignment at sc0002434:32086..35946- (Clytia hemisphaerica)
AGAATCGAATTGAATTTCATAGTGGCCATCGACTTCACTGCGTCGAACGG TAAGTGACATTCAATTATAATTCGTTGATTAATGAGATCGATTTCCGATC TTAATTAATTGGTGGTCGCTGTTTTCTTAATTAGCCTTCTATTGTGATTT TTTAAATGCTGACACAAGAGTTAACCTTGAAATTGAGTCTCCTATCCTGA ATATAAAAAATAAATGAATATAAAACTGATTATCAAAAGAGTAAACTAAA CGGATCTGCTTTTAGGAATACTGAAATTCCTTTAAAATCAACCTCTTAAA CTTTCATTGAGCAATTTCAATTTCAATCTCCCATCATTTGCTTGATACAC AGCATTTTTAAACAAAAAAAAAGAACAACCCCTCCTGTGCCGCGCGAGCA CAAATTTTGAGAAATTGTTTTGTTTATTCTGCTTTGTCAAAGCTGTCTGT CTGTCTTTCTACATCATATTTGAGTCTCCATACCTAGAAATTACGAGATA TAGAGTAAGGATTATAAGGCATTGTTAACTGAAGGGACCAGCAAACCTGT TCGAGATAAGAATTAATATATTTAAATAGCAATGAATTAAATTTACCATT CTTTCAGGTGAACCAAACAGACCAGACTCTTTACATTATAACACGCAAAA CCAACCAAGTCAATACGTACAAGCTCTCGATGCGATCGGTGGCGTGCTGG AAGACTATGACACGTAAGAACTTCTCCATCTATCATTAAAACGTCAATCG GACGTCCCTAACGTTCATAAAACTTACAAATAGCGTTTTCTACCAGCGTA GCGCTTTTACTTAAATTTTCTTGTTTTCTCGTTTCTATTTCGTTGGGGTT TTCCAGAAAAAATCGATGCACCCCTTGTTAATGAGTTTAATATTTAATGA GTTCCTTTTTTGTTGGAAGGTTCTGAAATGCAGTGGAATTCCATAGGGGT ATGATCCTAAAATTGCCTGGGATTCCAAGGGAGTCACAAGGTTGTCAAAC AATACCTAGGTTGTAATGGCACTTCATTGATATGAATAATAATTTTCTTG ATAAGCAGTATAATGTTTTTGATTTGTTTTAGGGATAAACGATTCCCAGC GTACGGTTTCGGTGCCAAAATTCCACCTTCTCAAACGGTGTTGCATGATT TCGCATTGGTAAGTGACTTTTTCATATGACCCTTTTTATTAGTCTGATTA TTGATCACAAATACGTAAAAAATAGTCCCAAATCAATAGTGTTAAAAGTT GACCCGCCTCTCCCGGCACAGTAAAGTATATAAAGAGTTTTTTCCGTCTT AAAATTCTGCATTTTCCACCAAAAGTTCAAGAATTTTGTGTTAATTTTCT CTCTGAAGCTCCTCGCTTTTAGTCGAGTGAGTGTTTAGTCACTTTACTTC GAAAAGGGGAATCCATGACCCAACTCATTCAAATGATTGTTTGTTCGTTA AGGCTTACCCCTCCTTGCTCATACCGTTGAAAGTATGATTGCTTCCTTCT ATTTCAGAATTTCAATCCGCAAAATCCATTTTGTCAAGGCGTTCAAAACA TCATTGGGGCGTACTATCATTCAATCAGAAGTGTCCAACTCTATGGTAAA CACCCATTTTTTCGATCTTTCTTTTTTTGAACTATTATAATTAACTTCGA TTCATGAAATATTGAGGGACTCGTCTCAAATCAAATAGAATGATAAAAAA TATAAATTGTGCAAATGTAAAAACGCGATGCCGTGATGTTGAGGTGTCTT GGTACAATTACTTTAGGCATACAAACTTTCGCGAGCGAAAACTTTCGCGA GTTCGAGAAATTTGCGGAATTCACGACATTTACTTTCGCGAATTTGAGGA AAAAATGTTTTTCGCCAGCATAAACTTTCGCGAATCGTAGGACAAAAATG AGTATTTTCGAATAAAAATTGCCTTAAAAGTGAAAAATATTCCTCAAATC CGAAAGCATTAAAGGATAATAATATGCCGAAAAATTAATATTTATTACGA TTATTATTATTATGTTTAGAATTTTCAAAGACATTTACTTTCGCGAAAAA GGCAAAAGTTCGCGAAAATTGCGAAAGTTTCTGCTCGCGAAAGTTTGTAC GCCAAAAGTACCTTACTGGAATCAAGGATGACATCATACCTTTCTTCCTT TCGAGCGTGAAAAACACTTTTCAGTTGAGGGGGTTATAGTTCGAATTAGA AGGAGTTGTCTGTATAGTGACCACGCCACAAAGCCAGGCATATCTCCCCA CACTCTTGTATGGCATGAGTTGACCCGGGCGAAGGTACAATCACTTACCA AGTCATATCATTATATCAATTAAACCATACATTTACAGGTCCAACGAATT TCTCGCCGGTCATCAACAACACAATAAGGTAAAAAAAACATTTCATTCTT AAAATTAATTTTCATTGAGTGCACTAATAATCAATCTCAATCAAGATAGA TGCTCAATTATTTTAACACTGGCAATCTTTGGGAAATTTGTTGATTTGAG AATGCTCTCGAAATTACTATAACCGTCAAATTAAATACCCTTAAAATATC ACCGCAATCCAGAAGATTAGACTCCCTTCTTCTATTTTTGGTTCATGGAA CCAATTGAAATGATCAGTAACAAAATAAATGTATTTCTGGTTTTTAGAAT CGCTCAACAAAATCCACAAGGAAAACAGTATGTATATTTTATCACCTTTG AAATCAATAACCAACTCTTTCTACTGTCTGTCGCATCGATCATCACTTAT CAACCCTTAACATGGCTTTTGAGGGGTCTGGTAATGAAATGACGCCAGAA TTCTTTGTCTATGATAATGCCAATGCAAAAGTTTCAGACATTTTGACGCC AACTCTCGCTTTAAAAGGATAGGTGTATATAACATCCAGCTTGCGTACTT TCAACGAATCCTAAGTCCGTCTTTTGACCCCTACACAAATAAACTCCTTC CTTCCTCAGATATTTCGTGTTGATGATCTTGACAGATGGAATTATCACAG ATATGAATCAAACGAAGGAAGCCATCGTCAACGTAAGTGATAGAGATACG GTCAATATTATCAATTTTATCCAACATTGTTAGCTGCTTATTGTTATCGG CTCTTTTATGCTTACTGATAGTAACAGATAATAAACTCTGTTGTTCATCA GTAACGTAAATAAAAGCCTGGGAAACACAAGTTGCTTTTTATCCGCTCGT CTTTTCCTTGATTTTTATTTCAAGTTCAAGACGCAGATTTTTTTTGTAAT TTTAGCCTAGTAATATTTGATGGGTCTAATCGATTTCATACGGAATCAAA AAACATCAAGCTTTACTTGAAAGGGTACTTTAGTCGGATTCGCAGACCTC TAATGACATAATTCCATATGAAACCTTTTCATCGGAGGATGATCAGATGA CTAGGGTACTGCCCGATTACTACATGGTGAAAAACTAATTAAGTCTGTGA CTGCAGTCGGAGGTGACCCGAAGCCCCGCTTTCGATAGCTATCTACCCGA AGGTAGGGGAGAGAGCCGCCCTTTTTCCCTGGATTGCTCCACTTAGCCTT GAGCATTTTCTTAACTGCTGAGCATCAAATACCATTTTTGTACAAAGTAC AAAATCTTTGGTATAACCCTACCGAGGGTTGAACCCACAACCTTGTGCAT CGTGGCCGGATACACTTAAGTGACAAATAACAATCAATTATTTTCCTTTT CTAGGCTGCCAACCTTCCTATCTCCATCATCATCGTAGGAGTGGGAACTG CTGACTTCTCAGGTAACAGCTTTATGAAAAGTGTTAAAAGTTCTTCGGTC TCAGAGAAGTATTTAAAGAGGCTTTTCAGTTGTCACCAAAGCCTCAAGAA TATGTGTAATT

Coding sequence (CDS) from alignment at sc0002434:32086..35946-

>TCONS_00040450 ID=TCONS_00040450|Name=TCONS_00040450|organism=Clytia hemisphaerica|type=CDS|length=4944bp|location=Sequence derived from alignment at sc0002434:32086..35946- (Clytia hemisphaerica)
GCTGCCAACCTTCCTATCTCCATCATCATCGTAGGAGTGGGAACTGCTGA
CTTCTCAGGTAACAGCTTTATGAAAAGTGTTAAAAGTTCTTCGGTCTCAG
AGAAGTATTTAAAGAGGCTTTTCAGTTGTCACCAAAGCCTCAAGAATATG
TGTAATATATTTCGTGTTGATGATCTTGACAGATGGAATTATCACAGATA
TGAATCAAACGAAGGAAGCCATCGTCAACAATCGCTCAACAAAATCCACA
AGGAAAACAGTCCAACGAATTTCTCGCCGGTCATCAACAACACAATAAGA
ATTTCAATCCGCAAAATCCATTTTGTCAAGGCGTTCAAAACATCATTGGG
GCGTACTATCATTCAATCAGAAGTGTCCAACTCTATGGGATAAACGATTC
CCAGCGTACGGTTTCGGTGCCAAAATTCCACCTTCTCAAACGGTGTTGCA
TGATTTCGCATTGGTGAACCAAACAGACCAGACTCTTTACATTATAACAC
GCAAAACCAACCAAGTCAATACGTACAAGCTCTCGATGCGATCGGTGGCG
TGCTGGAAGACTATGACACAGAATCGAATTGAATTTCATAGTGGCCATCG
ACTTCACTGCGTCGAACGGCTGCCAACCTTCCTATCTCCATCATCATCGT
AGGAGTGGGAACTGCTGACTTCTCAGGTAACAGCTTTATGAAAAGTGTTA
AAAGTTCTTCGGTCTCAGAGAAGTATTTAAAGAGGCTTTTCAGTTGTCAC
CAAAGCCTCAAGAATATGTGTAATATATTTCGTGTTGATGATCTTGACAG
ATGGAATTATCACAGATATGAATCAAACGAAGGAAGCCATCGTCAACAAT
CGCTCAACAAAATCCACAAGGAAAACAGTCCAACGAATTTCTCGCCGGTC
ATCAACAACACAATAAGAATTTCAATCCGCAAAATCCATTTTGTCAAGGC
GTTCAAAACATCATTGGGGCGTACTATCATTCAATCAGAAGTGTCCAACT
CTATGGGATAAACGATTCCCAGCGTACGGTTTCGGTGCCAAAATTCCACC
TTCTCAAACGGTGTTGCATGATTTCGCATTGGTGAACCAAACAGACCAGA
CTCTTTACATTATAACACGCAAAACCAACCAAGTCAATACGTACAAGCTC
TCGATGCGATCGGTGGCGTGCTGGAAGACTATGACACAGAATCGAATTGA
ATTTCATAGTGGCCATCGACTTCACTGCGTCGAACGGCTGCCAACCTTCC
TATCTCCATCATCATCGTAGGAGTGGGAACTGCTGACTTCTCAGGTAACA
GCTTTATGAAAAGTGTTAAAAGTTCTTCGGTCTCAGAGAAGTATTTAAAG
AGGCTTTTCAGTTGTCACCAAAGCCTCAAGAATATGTGTAATATATTTCG
TGTTGATGATCTTGACAGATGGAATTATCACAGATATGAATCAAACGAAG
GAAGCCATCGTCAACAATCGCTCAACAAAATCCACAAGGAAAACAGTCCA
ACGAATTTCTCGCCGGTCATCAACAACACAATAAGAATTTCAATCCGCAA
AATCCATTTTGTCAAGGCGTTCAAAACATCATTGGGGCGTACTATCATTC
AATCAGAAGTGTCCAACTCTATGGGATAAACGATTCCCAGCGTACGGTTT
CGGTGCCAAAATTCCACCTTCTCAAACGGTGTTGCATGATTTCGCATTGG
TGAACCAAACAGACCAGACTCTTTACATTATAACACGCAAAACCAACCAA
GTCAATACGTACAAGCTCTCGATGCGATCGGTGGCGTGCTGGAAGACTAT
GACACAGAATCGAATTGAATTTCATAGTGGCCATCGACTTCACTGCGTCG
AACGGCTGCCAACCTTCCTATCTCCATCATCATCGTAGGAGTGGGAACTG
CTGACTTCTCAGGTAACAGCTTTATGAAAAGTGTTAAAAGTTCTTCGGTC
TCAGAGAAGTATTTAAAGAGGCTTTTCAGTTGTCACCAAAGCCTCAAGAA
TATGTGTAATATATTTCGTGTTGATGATCTTGACAGATGGAATTATCACA
GATATGAATCAAACGAAGGAAGCCATCGTCAACAATCGCTCAACAAAATC
CACAAGGAAAACAGTCCAACGAATTTCTCGCCGGTCATCAACAACACAAT
AAGAATTTCAATCCGCAAAATCCATTTTGTCAAGGCGTTCAAAACATCAT
TGGGGCGTACTATCATTCAATCAGAAGTGTCCAACTCTATGGGATAAACG
ATTCCCAGCGTACGGTTTCGGTGCCAAAATTCCACCTTCTCAAACGGTGT
TGCATGATTTCGCATTGGTGAACCAAACAGACCAGACTCTTTACATTATA
ACACGCAAAACCAACCAAGTCAATACGTACAAGCTCTCGATGCGATCGGT
GGCGTGCTGGAAGACTATGACACAGAATCGAATTGAATTTCATAGTGGCC
ATCGACTTCACTGCGTCGAACGGCTGCCAACCTTCCTATCTCCATCATCA
TCGTAGGAGTGGGAACTGCTGACTTCTCAGGTAACAGCTTTATGAAAAGT
GTTAAAAGTTCTTCGGTCTCAGAGAAGTATTTAAAGAGGCTTTTCAGTTG
TCACCAAAGCCTCAAGAATATGTGTAATATATTTCGTGTTGATGATCTTG
ACAGATGGAATTATCACAGATATGAATCAAACGAAGGAAGCCATCGTCAA
CAATCGCTCAACAAAATCCACAAGGAAAACAGTCCAACGAATTTCTCGCC
GGTCATCAACAACACAATAAGAATTTCAATCCGCAAAATCCATTTTGTCA
AGGCGTTCAAAACATCATTGGGGCGTACTATCATTCAATCAGAAGTGTCC
AACTCTATGGGATAAACGATTCCCAGCGTACGGTTTCGGTGCCAAAATTC
CACCTTCTCAAACGGTGTTGCATGATTTCGCATTGGTGAACCAAACAGAC
CAGACTCTTTACATTATAACACGCAAAACCAACCAAGTCAATACGTACAA
GCTCTCGATGCGATCGGTGGCGTGCTGGAAGACTATGACACAGAATCGAA
TTGAATTTCATAGTGGCCATCGACTTCACTGCGTCGAACGGCTGCCAACC
TTCCTATCTCCATCATCATCGTAGGAGTGGGAACTGCTGACTTCTCAGGT
AACAGCTTTATGAAAAGTGTTAAAAGTTCTTCGGTCTCAGAGAAGTATTT
AAAGAGGCTTTTCAGTTGTCACCAAAGCCTCAAGAATATGTGTAATATAT
TTCGTGTTGATGATCTTGACAGATGGAATTATCACAGATATGAATCAAAC
GAAGGAAGCCATCGTCAACAATCGCTCAACAAAATCCACAAGGAAAACAG
TCCAACGAATTTCTCGCCGGTCATCAACAACACAATAAGAATTTCAATCC
GCAAAATCCATTTTGTCAAGGCGTTCAAAACATCATTGGGGCGTACTATC
ATTCAATCAGAAGTGTCCAACTCTATGGGATAAACGATTCCCAGCGTACG
GTTTCGGTGCCAAAATTCCACCTTCTCAAACGGTGTTGCATGATTTCGCA
TTGGTGAACCAAACAGACCAGACTCTTTACATTATAACACGCAAAACCAA
CCAAGTCAATACGTACAAGCTCTCGATGCGATCGGTGGCGTGCTGGAAGA
CTATGACACAGAATCGAATTGAATTTCATAGTGGCCATCGACTTCACTGC
GTCGAACGGCTGCCAACCTTCCTATCTCCATCATCATCGTAGGAGTGGGA
ACTGCTGACTTCTCAGGTAACAGCTTTATGAAAAGTGTTAAAAGTTCTTC
GGTCTCAGAGAAGTATTTAAAGAGGCTTTTCAGTTGTCACCAAAGCCTCA
AGAATATGTGTAATATATTTCGTGTTGATGATCTTGACAGATGGAATTAT
CACAGATATGAATCAAACGAAGGAAGCCATCGTCAACAATCGCTCAACAA
AATCCACAAGGAAAACAGTCCAACGAATTTCTCGCCGGTCATCAACAACA
CAATAAGAATTTCAATCCGCAAAATCCATTTTGTCAAGGCGTTCAAAACA
TCATTGGGGCGTACTATCATTCAATCAGAAGTGTCCAACTCTATGGGATA
AACGATTCCCAGCGTACGGTTTCGGTGCCAAAATTCCACCTTCTCAAACG
GTGTTGCATGATTTCGCATTGGTGAACCAAACAGACCAGACTCTTTACAT
TATAACACGCAAAACCAACCAAGTCAATACGTACAAGCTCTCGATGCGAT
CGGTGGCGTGCTGGAAGACTATGACACAGAATCGAATTGAATTTCATAGT
GGCCATCGACTTCACTGCGTCGAACGGCTGCCAACCTTCCTATCTCCATC
ATCATCGTAGGAGTGGGAACTGCTGACTTCTCAGGTAACAGCTTTATGAA
AAGTGTTAAAAGTTCTTCGGTCTCAGAGAAGTATTTAAAGAGGCTTTTCA
GTTGTCACCAAAGCCTCAAGAATATGTGTAATATATTTCGTGTTGATGAT
CTTGACAGATGGAATTATCACAGATATGAATCAAACGAAGGAAGCCATCG
TCAACAATCGCTCAACAAAATCCACAAGGAAAACAGTCCAACGAATTTCT
CGCCGGTCATCAACAACACAATAAGAATTTCAATCCGCAAAATCCATTTT
GTCAAGGCGTTCAAAACATCATTGGGGCGTACTATCATTCAATCAGAAGT
GTCCAACTCTATGGGATAAACGATTCCCAGCGTACGGTTTCGGTGCCAAA
ATTCCACCTTCTCAAACGGTGTTGCATGATTTCGCATTGGTGAACCAAAC
AGACCAGACTCTTTACATTATAACACGCAAAACCAACCAAGTCAATACGT
ACAAGCTCTCGATGCGATCGGTGGCGTGCTGGAAGACTATGACACAGAAT
CGAATTGAATTTCATAGTGGCCATCGACTTCACTGCGTCGAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024595XLOC_024595Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040450-exon-sc0002434-1575043694:35898..35946TCONS_00040450-exon-sc0002434-1575043694:35898..35946Clytia hemisphaericaexon
TCONS_00040450-exon-sc0002434-1575043694:35234..35339TCONS_00040450-exon-sc0002434-1575043694:35234..35339Clytia hemisphaericaexon
TCONS_00040450-exon-sc0002434-1575043694:34789..34864TCONS_00040450-exon-sc0002434-1575043694:34789..34864Clytia hemisphaericaexon
TCONS_00040450-exon-sc0002434-1575043694:34352..34439TCONS_00040450-exon-sc0002434-1575043694:34352..34439Clytia hemisphaericaexon
TCONS_00040450-exon-sc0002434-1575043694:33569..33608TCONS_00040450-exon-sc0002434-1575043694:33569..33608Clytia hemisphaericaexon
TCONS_00040450-exon-sc0002434-1575043694:33270..33299TCONS_00040450-exon-sc0002434-1575043694:33270..33299Clytia hemisphaericaexon
TCONS_00040450-exon-sc0002434-1575043694:32915..32987TCONS_00040450-exon-sc0002434-1575043694:32915..32987Clytia hemisphaericaexon
TCONS_00040450-exon-sc0002434-1575043694:32086..32242TCONS_00040450-exon-sc0002434-1575043694:32086..32242Clytia hemisphaericaexon
TCONS_00040450-exon-sc0002434-1510915933:35898..35946TCONS_00040450-exon-sc0002434-1510915933:35898..35946Clytia hemisphaericaexon
TCONS_00040450-exon-sc0002434-1510915933:35234..35339TCONS_00040450-exon-sc0002434-1510915933:35234..35339Clytia hemisphaericaexon
TCONS_00040450-exon-sc0002434-1510915933:34789..34864TCONS_00040450-exon-sc0002434-1510915933:34789..34864Clytia hemisphaericaexon
TCONS_00040450-exon-sc0002434-1510915933:34352..34439TCONS_00040450-exon-sc0002434-1510915933:34352..34439Clytia hemisphaericaexon
TCONS_00040450-exon-sc0002434-1510915933:33569..33608TCONS_00040450-exon-sc0002434-1510915933:33569..33608Clytia hemisphaericaexon
TCONS_00040450-exon-sc0002434-1510915933:33270..33299TCONS_00040450-exon-sc0002434-1510915933:33270..33299Clytia hemisphaericaexon
TCONS_00040450-exon-sc0002434-1510915933:32915..32987TCONS_00040450-exon-sc0002434-1510915933:32915..32987Clytia hemisphaericaexon
TCONS_00040450-exon-sc0002434-1510915933:32086..32242TCONS_00040450-exon-sc0002434-1510915933:32086..32242Clytia hemisphaericaexon
TCONS_00040450-exon-sc0002434-1491911889:35898..35946TCONS_00040450-exon-sc0002434-1491911889:35898..35946Clytia hemisphaericaexon
TCONS_00040450-exon-sc0002434-1491911889:35234..35339TCONS_00040450-exon-sc0002434-1491911889:35234..35339Clytia hemisphaericaexon
TCONS_00040450-exon-sc0002434-1491911889:34789..34864TCONS_00040450-exon-sc0002434-1491911889:34789..34864Clytia hemisphaericaexon
TCONS_00040450-exon-sc0002434-1491911889:34352..34439TCONS_00040450-exon-sc0002434-1491911889:34352..34439Clytia hemisphaericaexon
TCONS_00040450-exon-sc0002434-1491911889:33569..33608TCONS_00040450-exon-sc0002434-1491911889:33569..33608Clytia hemisphaericaexon
TCONS_00040450-exon-sc0002434-1491911889:33270..33299TCONS_00040450-exon-sc0002434-1491911889:33270..33299Clytia hemisphaericaexon
TCONS_00040450-exon-sc0002434-1491911889:32915..32987TCONS_00040450-exon-sc0002434-1491911889:32915..32987Clytia hemisphaericaexon
TCONS_00040450-exon-sc0002434-1491911889:32086..32242TCONS_00040450-exon-sc0002434-1491911889:32086..32242Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040450-proteinTCONS_00040450-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002434supercontigsc0002434:32086..35946 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.4717 23.3976 36.021 39.9243 12.8671 7.27043 10.2433 13.4291 13.8897 15.5464 29.7071 8.93852 13.2975 9.85074 12.6967 18.7136 18.6639 18.2509 13.2712 17.2775 17.1787 16.4613 14.2011 17.4964 1.65015 2.19926 58.2523 39.7254 23.0555 19.4792
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR010734Copine
Blast
BLAST of TCONS_00040450 vs. Swiss-Prot (Human)
Match: CPNE8 (Copine-8 OS=Homo sapiens GN=CPNE8 PE=1 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 9.610e-70
Identity = 104/172 (60.47%), Postives = 133/172 (77.33%), Query Frame = 1
Query:    7 ELNFIVAIDFTASNGEPNRPDSLHYNTQNQPSQYVQALDAIGGVLEDYDTDKRFPAYGFGAKIPPSQTVLHDFALNFNPQNPFCQGVQNIIGAYYHSIRSVQLYGPTNFSPVINNTIRIAQQNPQGKQYFVLMILTDGIITDMNQTKEAIVNAANLPISIIIVGVGTADFSG 522
            ++NF VAIDFTASNG P +P SLHY    Q + Y  AL A+G +++DYD+DK FPA GFGAK+PP   + H+FALN NPQNP+C G++ ++ AYY S++SVQLYGPTNF+PVIN+  R A     G QYFVL+I+TDG+I+DM QTKE+IVNA+ LP+SIIIVGVG A+F  
Sbjct:  307 QINFTVAIDFTASNGNPAQPTSLHYMNPYQLNAYGMALKAVGEIVQDYDSDKMFPALGFGAKLPPDGRISHEFALNGNPQNPYCDGIEGVMEAYYRSLKSVQLYGPTNFAPVINHVARYASSVKDGSQYFVLLIVTDGVISDMAQTKESIVNASKLPMSIIIVGVGPAEFDA 478          
The following BLAST results are available for this feature:
BLAST of TCONS_00040450 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CPNE89.610e-7060.47Copine-8 OS=Homo sapiens GN=CPNE8 PE=1 SV=2[more]
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