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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00040281 ID=TCONS_00040281|Name=TCONS_00040281|organism=Clytia hemisphaerica|type=transcript|length=854bp
CAACCACACAACAAATTCCTGCCTCCTCCATTGTTGTGCGTTCTCTGACA
TCGTCAACATTCAGAACTCAAATACAGGAGCCTATTCAACCTTTCACCTT
TGATGAGGACCTGGACATGTCTGAAATAGAGATATCTCAAATCAGACAAA
GAATTCTTTTGTAATTCCACAGATTNTCGTCAACATTCAGAACTCAAATA
CAGGAGCCTATTCAACCTTTCACCTTTGATGAGGACCTGGACATGTCTGA
AATAGAGATATCTCAAATCAGACaaagaattcttttgaaattctacAGAT
GTCTCGAAATCAATATTCGCCGGACACATCTTTTTGAGGATGTTATAAAC
ATCTTTAAAGAAATGACTGGATTTTCCGAAATCAAGGTAAAATTTGAGGG
AGAAATGGGCGTAGACGAGAGAGGTCTAACCAGAGATTTACTCTCTGAGT
TTTGGAAAGAGTTTGGTGAGCGATTTGGTAAAGGCAGTGACCAACTTTTG
TTTCATCCAACTGCTAGTGCTATGAAATATCTTGAGGATGATGAATTTGT
GGCAATTGGAAAGGTTTTCATGGTTGGTTTAATTTTTGTTGGGTTCCTTC
CTTTTAGAATGAACAAATCATTTCTCCTCTTCTTGCTGACAGGGAAGCAC
AGCATGGAtccagtggcggcctggcagggggtgcagggtgtgcagtgcac
cacccagaaagacctgagaggggcgccaaaaagcttttcaagggggcgca
aaatttgttcttgatgtttggttgggcgatttggcgccctttgacacgtt
tttagcgccttctataagtgcaatgtaaattcttttcgcctgcggcgctt
cgtt Run BLAST on NCBI protein sequence of TCONS_00040281-protein >TCONS_00040281-protein ID=TCONS_00040281-protein|Name=TCONS_00040281-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
MSEIEISQIRQRILLKFYRCLEINIRRTHLFEDVINIFKEMTGFSEIKVK
FEGEMGVDERGLTRDLLSEFWKEFGERFGKGSDQLLFHPTASAMKYLEDD
EFVAIGKVFMVGLIFVGFLPFRMNKSFLLFLLTGKHSMDPVAAWQGVQGV
QCTTQKDLRGAPKSFSRGRKICS Run BLAST on NCBI transcript from alignment at sc0002375:23124..23977 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00040281 ID=TCONS_00040281|Name=TCONS_00040281|organism=Clytia hemisphaerica|type=transcript|length=854bp|location=Sequence derived from alignment at sc0002375:23124..23977 (Clytia hemisphaerica)
aacgaagcgccgcaggcgaaaagaatttacattgcacttatagaaggcgc
taaaaacgtgtcaaagggcgccaaatcgcccaaccaaacatcaagaacaa
attttgcgcccccttgaaaagctttttggcgcccctctcaggtctttctg
ggtggtgcactgcacaccctgcaccccctgccaggccgccactggaTCCA
TGCTGTGCTTCCCTGTCAGCAAGAAGAGGAGAAATGATTTGTTCATTCTA
AAAGGAAGGAACCCAACAAAAATTAAACCAACCATGAAAACCTTTCCAAT
TGCCACAAATTCATCATCCTCAAGATATTTCATAGCACTAGCAGTTGGAT
GAAACAAAAGTTGGTCACTGCCTTTACCAAATCGCTCACCAAACTCTTTC
CAAAACTCAGAGAGTAAATCTCTGGTTAGACCTCTCTCGTCTACGCCCAT
TTCTCCCTCAAATTTTACCTTGATTTCGGAAAATCCAGTCATTTCTTTAA
AGATGTTTATAACATCCTCAAAAAGATGTGTCCGGCGAATATTGATTTCG
AGACATCTgtagaatttcaaaagaattctttGTCTGATTTGAGATATCTC
TATTTCAGACATGTCCAGGTCCTCATCAAAGGTGAAAGGTTGAATAGGCT
CCTGTATTTGAGTTCTGAATGTTGACGANAATCTGTGGAATTACAAAAGA
ATTCTTTGTCTGATTTGAGATATCTCTATTTCAGACATGTCCAGGTCCTC
ATCAAAGGTGAAAGGTTGAATAGGCTCCTGTATTTGAGTTCTGAATGTTG
ACGATGTCAGAGAACGCACAACAATGGAGGAGGCAGGAATTTGTTGTGTG
GTTG Coding sequence (CDS) from alignment at sc0002375:23124..23977 >TCONS_00040281 ID=TCONS_00040281|Name=TCONS_00040281|organism=Clytia hemisphaerica|type=CDS|length=522bp|location=Sequence derived from alignment at sc0002375:23124..23977 (Clytia hemisphaerica)
tcaagaacaaattttgcgcccccttgaaaagctttttggcgcccctctca
ggtctttctgggtggtgcactgcacaccctgcaccccctgccaggccgcc
actggaTCCATGCTGTGCTTCCCTGTCAGCAAGAAGAGGAGAAATGATTT
GTTCATTCTAAAAGGAAGGAACCCAACAAAAATTAAACCAACCATGAAAA
CCTTTCCAATTGCCACAAATTCATCATCCTCAAGATATTTCATAGCACTA
GCAGTTGGATGAAACAAAAGTTGGTCACTGCCTTTACCAAATCGCTCACC
AAACTCTTTCCAAAACTCAGAGAGTAAATCTCTGGTTAGACCTCTCTCGT
CTACGCCCATTTCTCCCTCAAATTTTACCTTGATTTCGGAAAATCCAGTC
ATTTCTTTAAAGATGTTTATAACATCCTCAAAAAGATGTGTCCGGCGAAT
ATTGATTTCGAGACATCTgtagaatttcaaaagaattctttGTCTGATTT
GAGATATCTCTATTTCAGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00040281-exon-sc0002375-1491911889:23124..23977 | TCONS_00040281-exon-sc0002375-1491911889:23124..23977 | Clytia hemisphaerica | exon |
| TCONS_00040281-exon-sc0002375-1510915933:23124..23977 | TCONS_00040281-exon-sc0002375-1510915933:23124..23977 | Clytia hemisphaerica | exon |
| TCONS_00040281-exon-sc0002375-1575043694:23124..23977 | TCONS_00040281-exon-sc0002375-1575043694:23124..23977 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002375 | supercontig | sc0002375:23124..23977 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000569 | HECT_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004842 | ubiquitin-protein transferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0004842 |
ubiquitin-protein transferase activity |
Blast
The following BLAST results are available for this feature:
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