TCONS_00040281 (transcript) - C. hemisphaerica

Overview
NameTCONS_00040281
Unique NameTCONS_00040281
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length854

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00040281 ID=TCONS_00040281|Name=TCONS_00040281|organism=Clytia hemisphaerica|type=transcript|length=854bp
CAACCACACAACAAATTCCTGCCTCCTCCATTGTTGTGCGTTCTCTGACA
TCGTCAACATTCAGAACTCAAATACAGGAGCCTATTCAACCTTTCACCTT
TGATGAGGACCTGGACATGTCTGAAATAGAGATATCTCAAATCAGACAAA
GAATTCTTTTGTAATTCCACAGATTNTCGTCAACATTCAGAACTCAAATA
CAGGAGCCTATTCAACCTTTCACCTTTGATGAGGACCTGGACATGTCTGA
AATAGAGATATCTCAAATCAGACaaagaattcttttgaaattctacAGAT
GTCTCGAAATCAATATTCGCCGGACACATCTTTTTGAGGATGTTATAAAC
ATCTTTAAAGAAATGACTGGATTTTCCGAAATCAAGGTAAAATTTGAGGG
AGAAATGGGCGTAGACGAGAGAGGTCTAACCAGAGATTTACTCTCTGAGT
TTTGGAAAGAGTTTGGTGAGCGATTTGGTAAAGGCAGTGACCAACTTTTG
TTTCATCCAACTGCTAGTGCTATGAAATATCTTGAGGATGATGAATTTGT
GGCAATTGGAAAGGTTTTCATGGTTGGTTTAATTTTTGTTGGGTTCCTTC
CTTTTAGAATGAACAAATCATTTCTCCTCTTCTTGCTGACAGGGAAGCAC
AGCATGGAtccagtggcggcctggcagggggtgcagggtgtgcagtgcac
cacccagaaagacctgagaggggcgccaaaaagcttttcaagggggcgca
aaatttgttcttgatgtttggttgggcgatttggcgccctttgacacgtt
tttagcgccttctataagtgcaatgtaaattcttttcgcctgcggcgctt
cgtt
Run BLAST on NCBI

protein sequence of TCONS_00040281-protein

>TCONS_00040281-protein ID=TCONS_00040281-protein|Name=TCONS_00040281-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
MSEIEISQIRQRILLKFYRCLEINIRRTHLFEDVINIFKEMTGFSEIKVK
FEGEMGVDERGLTRDLLSEFWKEFGERFGKGSDQLLFHPTASAMKYLEDD
EFVAIGKVFMVGLIFVGFLPFRMNKSFLLFLLTGKHSMDPVAAWQGVQGV
QCTTQKDLRGAPKSFSRGRKICS
Run BLAST on NCBI

transcript from alignment at sc0002375:23124..23977

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00040281 ID=TCONS_00040281|Name=TCONS_00040281|organism=Clytia hemisphaerica|type=transcript|length=854bp|location=Sequence derived from alignment at sc0002375:23124..23977 (Clytia hemisphaerica)
aacgaagcgccgcaggcgaaaagaatttacattgcacttatagaaggcgc
taaaaacgtgtcaaagggcgccaaatcgcccaaccaaacatcaagaacaa
attttgcgcccccttgaaaagctttttggcgcccctctcaggtctttctg
ggtggtgcactgcacaccctgcaccccctgccaggccgccactggaTCCA
TGCTGTGCTTCCCTGTCAGCAAGAAGAGGAGAAATGATTTGTTCATTCTA
AAAGGAAGGAACCCAACAAAAATTAAACCAACCATGAAAACCTTTCCAAT
TGCCACAAATTCATCATCCTCAAGATATTTCATAGCACTAGCAGTTGGAT
GAAACAAAAGTTGGTCACTGCCTTTACCAAATCGCTCACCAAACTCTTTC
CAAAACTCAGAGAGTAAATCTCTGGTTAGACCTCTCTCGTCTACGCCCAT
TTCTCCCTCAAATTTTACCTTGATTTCGGAAAATCCAGTCATTTCTTTAA
AGATGTTTATAACATCCTCAAAAAGATGTGTCCGGCGAATATTGATTTCG
AGACATCTgtagaatttcaaaagaattctttGTCTGATTTGAGATATCTC
TATTTCAGACATGTCCAGGTCCTCATCAAAGGTGAAAGGTTGAATAGGCT
CCTGTATTTGAGTTCTGAATGTTGACGANAATCTGTGGAATTACAAAAGA
ATTCTTTGTCTGATTTGAGATATCTCTATTTCAGACATGTCCAGGTCCTC
ATCAAAGGTGAAAGGTTGAATAGGCTCCTGTATTTGAGTTCTGAATGTTG
ACGATGTCAGAGAACGCACAACAATGGAGGAGGCAGGAATTTGTTGTGTG
GTTG

Coding sequence (CDS) from alignment at sc0002375:23124..23977

>TCONS_00040281 ID=TCONS_00040281|Name=TCONS_00040281|organism=Clytia hemisphaerica|type=CDS|length=522bp|location=Sequence derived from alignment at sc0002375:23124..23977 (Clytia hemisphaerica)
tcaagaacaaattttgcgcccccttgaaaagctttttggcgcccctctca
ggtctttctgggtggtgcactgcacaccctgcaccccctgccaggccgcc
actggaTCCATGCTGTGCTTCCCTGTCAGCAAGAAGAGGAGAAATGATTT
GTTCATTCTAAAAGGAAGGAACCCAACAAAAATTAAACCAACCATGAAAA
CCTTTCCAATTGCCACAAATTCATCATCCTCAAGATATTTCATAGCACTA
GCAGTTGGATGAAACAAAAGTTGGTCACTGCCTTTACCAAATCGCTCACC
AAACTCTTTCCAAAACTCAGAGAGTAAATCTCTGGTTAGACCTCTCTCGT
CTACGCCCATTTCTCCCTCAAATTTTACCTTGATTTCGGAAAATCCAGTC
ATTTCTTTAAAGATGTTTATAACATCCTCAAAAAGATGTGTCCGGCGAAT
ATTGATTTCGAGACATCTgtagaatttcaaaagaattctttGTCTGATTT
GAGATATCTCTATTTCAGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024451XLOC_024451Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040281-proteinTCONS_00040281-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00040281-exon-sc0002375-1491911889:23124..23977TCONS_00040281-exon-sc0002375-1491911889:23124..23977Clytia hemisphaericaexon
TCONS_00040281-exon-sc0002375-1510915933:23124..23977TCONS_00040281-exon-sc0002375-1510915933:23124..23977Clytia hemisphaericaexon
TCONS_00040281-exon-sc0002375-1575043694:23124..23977TCONS_00040281-exon-sc0002375-1575043694:23124..23977Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002375supercontigsc0002375:23124..23977 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0791248	0.0736112	0.183871	0.577109	4.76254	6.96428	7.22458	8.93853	3.66287	4.38641	4.52614	3.32136	2.00982	1.87247	0.416564	2.08955	0.406108	0.475256	0.660678	0.920394	0.185607	0.91357	0.288446	0.122854	0.905988	5.4487	0.18919	0.531005	0.219285	0.312965
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000569HECT_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004842 ubiquitin-protein transferase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00040281 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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