TCONS_00039880 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039880
Unique NameTCONS_00039880
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length525

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039880 ID=TCONS_00039880|Name=TCONS_00039880|organism=Clytia hemisphaerica|type=transcript|length=525bp
agCGTTCTTACTGCTCTCCTACTGTGGAATGTATCTTCTGTGGGGACTTT
GTCGAGCTTCTATTGTTACAGGAACATACCAAAATCTGCTCTAAGAACCC
TGGAAATGAACAGAAGGAGAATGGGCAGAATGATAAAGAAACTAGTCAAT
CATCAACATCAACTTCAACAAGGACAAGTTCATTTGTAAATACTCACACA
AGAAATGATGCACCAGTAACTAGTCAATCATCAACATCAACTTCAACAAG
GACAAGTTCATTTGTAAATACTCACACAAGAAATGATGCACCAGTAGCCA
TGCCATTACAACCAAGGATTTCAACTGGTACCCAACCAAGCTCAGAAATT
ATGGATATAACTTCAACTTTctcAATGGCTGCTGATACGGATGATGTCAT
CACCTCAGGACTCGCAGACTCAGTGTCCAAATATAACGCTATGAAAGCAA
CTGTAAAGGAATGGGAAAAGTGTGATATCTGTGAGGAGGTTATCGAAGAC
TCTCCCTCTCATATGATGCGTTGCA
Run BLAST on NCBI

transcript from alignment at sc0002229:11513..15088-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039880 ID=TCONS_00039880|Name=TCONS_00039880|organism=Clytia hemisphaerica|type=transcript|length=3576bp|location=Sequence derived from alignment at sc0002229:11513..15088- (Clytia hemisphaerica)
AGCGTTCTTACTGCTCTCCTACTGTGGAATGTATCTTCTGTGGGGACTTT
GTCGAGCTTCTATTGTTACAGGAACATACCAAAATCTGCTCTAAGGTAAC
TTTTTTAAACTTTTGAATAAAGAGCTTTTTAATTTGATAATAAAAGTTAC
AGGGGTTTCATTAAAACATGGTACCATAGGGTACCCTGATATGGTAGACC
TTCTGGTATACCCTGCCCTGAAAAAAGTTTGGAGTCAATGAAAAATATAT
AAAGTCACAATTAAATGGTGATGGTTTTGTGCTTGTTGAAAAAATAACTT
TGACTTGAGAAATCTCACTTGAAAAAAGGTTAAAATCCCTTATTTAATTT
CTCACCAATAGCTCCTGAAATATTTCTTTTCTCAAGTTATTCAACCTATG
CCATTAAAACCTTGTCATCTTTGATCCACTGGGAGAGGATAATTTGACAT
TTTTTCCCTTTAGGAAGTTTANTCACTTGAAAAAAGGTTAAAAATCCCTT
ATTTAATTTCTCACCAATAGCTCCTGAAATATGCCATTAAAACCTTTTCA
TCTTTGATCCACTGGGAGAAGATAATTTGACATTTTTTCCCTTTAGGAAG
TTTAATTTTCTTATGTCAAACTGTTTTCATTCATTATTTTATGTTATTTT
TCTTATTCGTTAGAACCCTGGAAATGAACAGAAGGAGAATGGGCAGAATG
ATAAAGAGTGAGAGTTATGAGATTTTATTTGATTTAGATAAAGTTAGATT
CACTCTGTCTCTTGGATATGCTTCTTTTATTTCTACTCTGCTTGTTGCTT
TATTTTCACCTATATCAGGTAGGTCCGTACATGTATCAACTTATTAAATG
ATAAGTTAATGTTTTCATTCTTCAGATAAGATTCTTTTTTAAGTATGAAA
CACAATCCAATTCAAATTAGACTTTATGCCGAAAGTTATTTTTATTTTCT
CTTTAATTTTAGAACTAGTCAATCATCAACTTCAACAAGGACAAGTTCAT
TTGTAAATACTCACACAAGAAATGATGCACCAGTGTAAGTTTTAAGTTTT
TTTGATAGATGATATTATTTACTTTTAGCCAGATTGATTCCTCATTTTGT
TGTTTTTATGAACCTAAACTGTAAAGTTGGGTGAGCTGATCAAATTTTTA
GGATTTGCCCCCAATTTCTTTCATCTATTAAAATTGAGGATTTCAAACCC
CCCACCTGCATTCAAGAGTGACCTTTTGATTAGGGAAGCACTATGATGAC
AAATTAGTTTTTCTTTTTTCTCAAAAAAGGCCCTTTTTTCAAGAACAAGC
AGAATCCAATTTAATCTAGGCTTTATGCCAAAAGTTATTTTTATTTTCTC
TTTAATTTCAGAACTAGTCAATCATCAACATCAACTTCAACAAGGACAAG
TTCATTTGTAAATACTCACACAAGAAATGATGCACCAGTGTAAGCTTTAA
GTTTTTTTGATAGATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCTCTTTAATTTTAGAACTAG
TCAATCATCAACATCAACTTCAACAAGGACAAGTTCATTTGTAAATACTC
ACACAAGAAATGATGCACCAGTGTAAGCTTTAAGTTTTTTTGATAGATGA
TATTATTTACTTTTAGCCAGATTGATTCCTCATTTTGTTGTTTTAATGAA
CCTAAACTGTAAAGTACGGTAAGCTGGTCAGCTGGCAAAAAGATATCTGA
ACATTTCAGGTGTTTATTTATTAGTGAGGACCACTTTGTTCCAAAAACAT
CCTTCGTGTGTACAGTTTTGTTAGATGCAAACTAATTTAGTTAGTTGTTG
ATTTTAATCCATTTTCCTTCAACTTGTTCCAACGCGATGTCATAACTTGA
TATTGAAAATTATTAGAGGATGGGGCTTAATTGGGGGAAATACGGTAAGG
CCTAAATGAATTTTGTTTTCATAAGGATCCCATCAGCAATTGTGTTGTTG
ACTCAAAAACATTAGGTTCATTTGAAAGAGGACCTTGTGAACAAAAAGAA
TATTATTACGAAAAACTAGCCTAGTTAAAAACAATAAGTATCATGCCAAA
TTTGCATTCATTTAATTTTTAGAGCCATGCCATTACAACCAAGGATTTCA
ACTGGTACCCAACCAAGCTCAGAAATTATGGATATAACTTCAACTTTGTA
GGTTGATCATTGGTGGTTACACCCCGTTTTATTTAAATTTCTGGAATCCT
TTGGTAACGTAACTAAAAAGAAGAGAATTTGAAAATTTTGATACGGTGGT
TGTCTGTACGAGGAACAATTATGAAAGGAATGTTTAGATTGAAGCCTTCA
ATATAAAGTGTCTATTTTACATAACCCACTCAACATTTTACTGAGTTGTC
TAGAATTTACAGCTGAAGATAAGCCTTTAAAACTGTAATCGCCATTTTAG
ATCTGTGTTCTCAAGAAATACAGGTCAGACTGGTTCTCAGCAACATTCTG
TTTCTGCTTCCTTGCCAGTACTAACTGCGTGGTAAGGGGAGGATGAAGGC
AAATCATCATTCAATACCAGCGCCTAGCCCCTCCCATCAAGAAACGACTG
CGCACTTACACTTATATAAAATTTAATTTTTCTTTTAGCTCAATGGCTGC
TGATACGGATGATGTCATCACCTCAGGACTCGCAGACTCAGTGTCCAAAT
ATAACGCTATGTAAGACTAAAATATTTCAATAATAGTGCTCTGTATTGGT
AAAATATGTTTACAATTTCAACCCCATATGAAATTACCCAACCCTAATCA
ACCTACTTTTTTTCTTTTTACTTTTTTCATAATAGTGAGGTGGTGAAAAC
ATGATTTTCGGTGGAAATCTTTTTAGCAAATTTAGACGAAGAACTGCTTA
ACAATTTGGTTTTTTTCGACTGGTTTTTTTTATCATTTTTGTAAATGGTC
CTTTAAAAATGCCATTGTGAAAACGATTTTTTCCAAAAGAATCTTTTGGG
CTCAAAAAATTATTTTTAGCCATAAGGAAGGATCAAAGCATAAATCATAG
TAGGCTACGATGCATAAATCAATGTTGGGTCTTAACTGAATTATTTCTAA
TTTGCATGAGATGGATCAATTTTACTAATGAAATTGTATTTCTACAAATT
ATGTGAGTTGTTTGGTTTGAAATTTTCTGATTTGCTTTGCTTTCATTTTC
ATTTCCCTTCCAAATTTACCATTATATTACCTTTTTTCCATAGGAAAGCA
ACTGTAAAGGAATGGGAAAAGTGTGATATCTGTGAGGAGGTTATCGAAGA
CTCTCCCTCTCATATGATGCGTTGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024137XLOC_024137Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039880-exon-sc0002229-1575043694:14994..15088TCONS_00039880-exon-sc0002229-1575043694:14994..15088Clytia hemisphaericaexon
TCONS_00039880-exon-sc0002229-1575043694:14382..14425TCONS_00039880-exon-sc0002229-1575043694:14382..14425Clytia hemisphaericaexon
TCONS_00039880-exon-sc0002229-1575043694:13650..13727TCONS_00039880-exon-sc0002229-1575043694:13650..13727Clytia hemisphaericaexon
TCONS_00039880-exon-sc0002229-1575043694:13217..13294TCONS_00039880-exon-sc0002229-1575043694:13217..13294Clytia hemisphaericaexon
TCONS_00039880-exon-sc0002229-1575043694:12642..12716TCONS_00039880-exon-sc0002229-1575043694:12642..12716Clytia hemisphaericaexon
TCONS_00039880-exon-sc0002229-1575043694:12129..12200TCONS_00039880-exon-sc0002229-1575043694:12129..12200Clytia hemisphaericaexon
TCONS_00039880-exon-sc0002229-1575043694:11513..11595TCONS_00039880-exon-sc0002229-1575043694:11513..11595Clytia hemisphaericaexon
TCONS_00039880-exon-sc0002229-1510915933:14994..15088TCONS_00039880-exon-sc0002229-1510915933:14994..15088Clytia hemisphaericaexon
TCONS_00039880-exon-sc0002229-1510915933:14382..14425TCONS_00039880-exon-sc0002229-1510915933:14382..14425Clytia hemisphaericaexon
TCONS_00039880-exon-sc0002229-1510915933:13650..13727TCONS_00039880-exon-sc0002229-1510915933:13650..13727Clytia hemisphaericaexon
TCONS_00039880-exon-sc0002229-1510915933:13217..13294TCONS_00039880-exon-sc0002229-1510915933:13217..13294Clytia hemisphaericaexon
TCONS_00039880-exon-sc0002229-1510915933:12642..12716TCONS_00039880-exon-sc0002229-1510915933:12642..12716Clytia hemisphaericaexon
TCONS_00039880-exon-sc0002229-1510915933:12129..12200TCONS_00039880-exon-sc0002229-1510915933:12129..12200Clytia hemisphaericaexon
TCONS_00039880-exon-sc0002229-1510915933:11513..11595TCONS_00039880-exon-sc0002229-1510915933:11513..11595Clytia hemisphaericaexon
TCONS_00039880-exon-sc0002229-1491911889:14994..15088TCONS_00039880-exon-sc0002229-1491911889:14994..15088Clytia hemisphaericaexon
TCONS_00039880-exon-sc0002229-1491911889:14382..14425TCONS_00039880-exon-sc0002229-1491911889:14382..14425Clytia hemisphaericaexon
TCONS_00039880-exon-sc0002229-1491911889:13650..13727TCONS_00039880-exon-sc0002229-1491911889:13650..13727Clytia hemisphaericaexon
TCONS_00039880-exon-sc0002229-1491911889:13217..13294TCONS_00039880-exon-sc0002229-1491911889:13217..13294Clytia hemisphaericaexon
TCONS_00039880-exon-sc0002229-1491911889:12642..12716TCONS_00039880-exon-sc0002229-1491911889:12642..12716Clytia hemisphaericaexon
TCONS_00039880-exon-sc0002229-1491911889:12129..12200TCONS_00039880-exon-sc0002229-1491911889:12129..12200Clytia hemisphaericaexon
TCONS_00039880-exon-sc0002229-1491911889:11513..11595TCONS_00039880-exon-sc0002229-1491911889:11513..11595Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002229supercontigsc0002229:11513..15088 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.144695	9.13509e-09	0.124751	0	0	0	0	0	0	0	0	0	0.504939	0	0	0	0	0	0	0	0	0	0	0	6.36936e-08	0.876764	0.11319	0	0.489162	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039880 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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