TCONS_00039698 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039698
Unique NameTCONS_00039698
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1400

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039698 ID=TCONS_00039698|Name=TCONS_00039698|organism=Clytia hemisphaerica|type=transcript|length=1400bp
AAACGCCATTAAAAACAaccaaatttcaatcaaatcagCAATTAAAACAA
TTCTTTTACAACACTACGCATGCGCCtgtaaataaaacaataaatggtca
ttcaaaaagatatcaaaataCCGCTTGCTGTtataaaaacacacaaattt
tgcAAGAAAGAATCATTCTCGAGCTGAACTATCAAGCAGAGGACAGCGCT
TCTACAAAAGGTTTACTTTCAAAATAACTACAAGAAAATCCAACTAAAGA
TGGCAGCTAATGTTACATTCGATTACTCTGGAAAAGTGGTGCTGGTCACA
GGTGCTGGATCAGGCATCGGTCAAGGCACTGCATACATGTTCGCAAAGTC
TGGTGCCAAAATGGTCGTTACAGATCGTAACGAAGGCAAATTGAAAGAAA
CGGCAAACAAATGTGAAGAATTAAGCAAGCAAAAGGCTCTGGCAATTGTT
GGAGATATCACAGTTCAAAGTGACATTGAGAACATTATCAACACAACCAT
GGATACTTTCAAACGTCTCGATGTCTTGGTAAACAATGCTGGAGGTTTAG
TTATGGGAACATGTCTTCAAACATCAACGGAAGATTTTGATCAAATGATG
AACATCAATGTCAGATCTGTTTTTCTTATCACCAAGATGGCTATCCCGCA
TTTGAAGAAAACTCAAGGCAACATTGTCAATGTTTCGACCCTTGGTAGCT
CGAGAccaCAAATTGGAGTAAATGCATATTGTACCAGCAAAGCAGCTTTG
GATCAATTTACGCGAGCTACTGCAATTGAGTTAGGAGCTGACCAAGTTCG
TGTCAATTGTGTCAACCCGAGCATTATTGCTACGGAAAATACCTCAAGTA
GCAACCATCCCACAATCTCAAGTGCAATGGAAAGAAGCAAAGACGTGCAC
GCCCTGGGACGTGCTGGTACAGTTGACGAGGTAGCCTCAGTTATCTGTTT
CCTAGCGTCAGGAGCTGCTTCATATATGACTGGAGCATGCATCCCAATCG
ATGGAGGACGATCAAACATGATTCCAGTCTAGATCTTCAACAATACGATA
TTTACAGTCTGTAACatggattaaaaaaaaattctaccaaCAAAATCGAA
GTACTTTGATTTCTTTGAACAGTGTGATTTTTAATGTTAGCTTactattt
tgtgaattttttgtGGTTTTGGGTGAAGCACTCTTTTGtatattgtcaat
tttttcacttttctataaaagcaaatatctttggaaataatttttttact
atGGTTGAATAAGAAATAAAAACGAAATACAAAAAATTTACATGGTCGTA
TTAATTGATGCATCGAGAAGGAACTGAGAAGtgaataatttcaatttgaa
gataattattttttggggaattaaAGGGGAAGGCTCCGCTTACGCTTTTC
Run BLAST on NCBI

protein sequence of TCONS_00039698-protein

>TCONS_00039698-protein ID=TCONS_00039698-protein|Name=TCONS_00039698-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MAANVTFDYSGKVVLVTGAGSGIGQGTAYMFAKSGAKMVVTDRNEGKLKE
TANKCEELSKQKALAIVGDITVQSDIENIINTTMDTFKRLDVLVNNAGGL
VMGTCLQTSTEDFDQMMNINVRSVFLITKMAIPHLKKTQGNIVNVSTLGS
SRPQIGVNAYCTSKAALDQFTRATAIELGADQVRVNCVNPSIIATENTSS
SNHPTISSAMERSKDVHALGRAGTVDEVASVICFLASGAASYMTGACIPI
DGGRSNMIPV
Run BLAST on NCBI

transcript from alignment at sc0002170:7024..13389+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039698 ID=TCONS_00039698|Name=TCONS_00039698|organism=Clytia hemisphaerica|type=transcript|length=6366bp|location=Sequence derived from alignment at sc0002170:7024..13389+ (Clytia hemisphaerica)
AAACGCCATTAAAAACAaccaaatttcaatcaaatcagCAATTAAAACAA
TTCTTTTACAACACTACGCATGCGCCtgtaaataaaacaataaatggtca
ttcaaaaagatatcaaaataCCGCTTGCTGTtataaaaacacacaaattt
tgcAAGAAAGAATCATTCTCGAGCTGAACTATCAAGCAGAGGACAGCGCT
TCTACAAAAGGTTTACTTTCAAAATAACTACAAGAAAATCCAACTAAAGA
TGGCAGCTAATGTTACATTCGATTACTCTGGAAAAGTGGTGCTGGTCACA
GGTTTGTAAAGATAATTTCTTCTATAATATCTTCTACCTCCAAGTTATAT
ACCACTCTATCCCATTGTCATTCATAAAATGTTTCGACCGCTTTTCTGGG
GTCCGTGGCTAAAAACATTAGTGTCGCATCCTTAGGTACAGAAAACATCT
TGTGTTCAACTAGTAAGTGATTCACTAAGCTGACCTTATCTAGAGCCTga
ttgcacgttttttataagaacattcaaaaattttgaagccttgggatgtt
gttaactttttgaaaaaaaaatttttaacatgctcttattttcgccattt
tttgagtacttttgtccattttcctatgaatTTCGGTTTTCTAGAGTCCG
AAaagcctaaagatgttcttcacttgttcttaacatcttGAGAATCGAAG
TCTTtatatatgttcttatatagtttgctcttataaaaaacgtctaTTAC
TATTTTCATTGGAATCCTAGTCCGAAAAGTAGAATCGTAGAATTTGCAAC
ATTGCGTGTTAGTAGATCTTCAATTCCCTTGTACACTTCAGAATTCCTTC
TCTCCCAAATAACTTCGAACCATTTTCTGGTATATCCGATACCTTTTATA
ACAGATTATAAGCTTATTGATATAAggattaatcaatttttttttaaata
tctttatcAGGTGCTGGATCAGGCATCGGTCAAGGCACTGCATACATGTT
CGCAAAGTCTGGTGCCAAAATGGTCGTTACAGATCGTAACGAAGGCAAAT
TGAAAGAAACGGCAAACAAATGTGAAGAATTAAGCAAGCAAAAGGTAATT
CAATTAAAAGCTGAATTAACATTTTCCTCTGTTCGAAAATTAGAACTATG
ATATTTTCCCTGTTTCGGGAGTAGGACAAACCCCTAGAAAAGATTACTCT
AGTACGAAAGAATCCCTAAAAAGACTTGAACTATCCGTCAGGGTGACTAA
TGAGTAAAGGATGGCTATTTTTGGAACACCGTGAAAAAATCACGTCCATA
TTTTTGTTTCACGTGAATTTAAACCATCTTGTCATTCAGAAATCCTTCCa
ttcaaagttttcttttaGTGTTTTTCTTGCCATCTCGGTGCAAAGCTGAC
CTTTCAAACTTTGTaataaacaatcaaaattatcgGAAAATATCCTACTG
TGGCTGAGAAATTTATGACCGTGATTTTTATTGAGGtgttaacaagcgaa
aaattaAAGTCctaccgtcgttttgtataagattctcatttctgcactaa
gattcttgtcagttttccggaatctttccgcTTCTTTTCCCGGCATGAAA
TGGAAAGGATTTGTTTCTAAAAGTAccaaaaatcttgtgtttactaaCTT
GCGAAACTACCTCACTTTCCCAAGCTTATTTGTCGACTACCCGAAGTTCT
GGTCATTTTCCGTcagaaaagtggcaaaggaatcttagtgcggaaataaG
AATCTTATACAAGAACGACGATATATTTTTCTCTACACAGACTCAGATTT
TTACTAAGAAACAAGTTCCACCAGCAATTATATATCTATAGGCGCTTATC
CATTTTCAACATATAAAAACAACTTTAAGAGAACGTCTCAACTTGTCTTA
GATAGACGTTCCTTTGACGTCTCGTTTTTCGCGCTTCCccgaaaaaatct
taaaaggcCTCATCCTAAAGAATATATCCCGAAAGGGCCATAGGTGAAAC
TCTTAGATATGAAATGAAGCAAATCATTTACCATCTGAGCCGCGTGACCG
TTTTGGCTTAAAACGCTGAATCGGAAGTTAGATATATTGCCACATTAAAA
ATATACCGCGTGTGTAAACAAACTTTCAATCCGCCATTCTAATTGTGGCG
AGAATCTTAAGGCTTCGTTTCTTGCTTCGGAAAGGTTAAAGATCTCACAC
TCTAGCTCTTCGAAGAAGCATAAAAGGCAAATCATCCATCCGAAATCCAA
AAATGTATTTTACATTTCTTCATTAACAGGCTCTGGCAATTGTTGGAGAT
ATCACAGTTCAAAGTGACATTGAGAACATTATCAACACAACCATGGATAC
TTTCAAACGTCTCGATGTCTTGGTAAGTTATTATTATCAACATCAAGTTA
GATATTGACGAAGTCAAATCCTTTGGTATTAGATGCTATGCCAGAATGtc
atgaaaattttaacatacAAGAACTTTAACTCAATAAGGTACGTTCATAT
GACTAAAATTAGTACTGCGACGCATTGAgtaatttaactttttttattac
GCAGGTAAACAATGCTGGAGGTTTAGTTATGGGAACATGTCTTCAAACAT
CAACGGAAGATTTTGATCAAATGATGAACATCAATGTCAGGTAAACGACT
TCCAGCTggttcaacgtttatctaacgttcacaacgtccatataacgtta
gattaacgtttaaacaacgttgtgtgccagctgggcttgTGTTCTTTCAT
TTCGTTCCTTCTACACTGGTATGTAAATTAACGAGTTCATGTATGTCTGT
TCTTCTGCTACGGAGATGgatagttttttcatttttctgtccTGACTGAC
TAGGGATGAAggtaaatcagcatttttcGGGTCAAAACTGAGTAGttcca
aatcgtttcagtcactttaccgtcctcagggtacataaatttacaatttc
acTGCAGCAAGGGTGTCGTAAGAGACGAATGTACACATCTCCAAATAAGG
ACGATAAACGCCCTATTTACAATTTATATTCATCAAGCTAGTGTTTGATT
TTTTGGCACAAGATATTGTCTCTTTGTCAGCTAAACAGGTCGCTTCTTGC
AACAAGATGAAGAGGTACTTAAAGTGTACCTACTTCAAACACTTGATTGT
CTGTATTTGTTAATATTACGCTAATTCAAATGTCACGTTTTGATGGGCTA
ATGTTTACATAATGGGTCTATTTTTAGATGCTACACGTGAAGAACTATTT
CTAATGCGAATCATGTACTTANGATGGGTCTATTGTTAGATGCTACACGT
GAAGAACTATTTCTAATGCGAATCACGTACTTAAAGAGAAAttactacct
tattacacgaatattactagtcattttattaacacgaattgaattAATTG
TGTTTTAATAAAAATCCCCTTAAATAAAACCAGGCGCTGTTTCCTTGAGA
AAGCAGAAAAATTCGTTAATTTCAGATTGTGagaatttcaaggccgttaa
atacttgcctagtaatattcgtgtaatgaGGTATATACACAAGCTCTCTG
ACTGGTCGGACCCTAATTATGTTATAGTTTTTATGTAAATTCTTGTTTCC
AGATCTGTTTTTCTTATCACCAAGATGGCTATCCCGCATTTGAAGAAAAC
TCAAGGTAAAAGTCAGCTCATtcatttttgctgaatcctAAAACTGAATT
TCAGCAAACTTTCCCTACTACAAGAAAGCCTTCGCCATTCCAATATCTTT
ATCTCTAGCTAAAATGGTTTTCCCTACAAATAAACTAAAACTTGATGGTA
CCCTGAAGATAATATCAGAGTATATTGTAAaagtgaaattattttttggg
gAATAAAAACCTTTGTGGAAAAAAGATTATTGTGGTGAACAAAAGCAGCA
ATTTGAGAAActaatttgggaaaaaaatggccaaaaattcttttcatatc
GGAACACGGCGATCTGGATTTATCGGATTAAAAAATGCCTATTTTTGGtc
gtaaagaaaaaatgacgaTATTTAACACAACGAATATCCAGTGAAAACTT
GAGATCTTTAGCCCTTCCCGATCGGGAATTAATTCgattccgattttgag
ggatcttgatctaaaattaaacttttcaaaaatttcccgattttgaatag
tttttatcaaaaaatttgttaAATCGGGCCGTTTTAAAAACAGTACTGCA
ctaattacaaaaataaacttttggtttccccgatttttaaacattactct
AAAGATCACCGCGGAAAAATACCAGTATGTTATGATCTTGACATTCGAGA
TTGGAATTTTGAGATTGGAATTTTGAGCAATAAACACTAAATTTCTACTC
ATTAAGACGTGTATTTTCTATCCCTATGGCCATTAAGCTCGTTCAAAATA
TTCTATTGTACTGGCTAAATGGGTCAATGTAACAATGGTCTGTACTGGGA
TAATTTAGAATGCGCCAAAAGATGTCGCGTTTATTAAAACCGTGTATTGT
TTAATCTTTTAGGCAACATTGTCAATGTTTCGACCCTTGGTAGCTCGAGA
ccagtaagtttttttttctcgatctcTTCAGAACTTTCAGTTGCCTCTTT
CCTTTTCATGAGACCATATTCGATTCAATAAGCATGAATAGAGTATAATA
TGAGGGGTGGTCAGAGcaagtttcttaaaaaattgagCTAAAATGCTAAG
CAACTTCAACCCTAAgccgaaaattttcttttgttgcaGCAAATTGGAGT
AAATGCATATTGTACCAGCAAAGCAGCTTTGGATCAATTTACGCGAGCTA
CTGCAATTGAGTTAGGAGCTGACCAAGTTCGTGTCAATTGTGTCAACCCG
AGCATTATTGCTACGGAAAATACCTCAAGTAGCAACCATCCCACAATCTC
AGTATGTAGTAGttttttaatttctaaaatatttctgtaACTTGAAAATC
ATTGTACAGCAGGCCCTTTCATCTAGTGCCTGTTTAATCCATTTAAAATA
CAGGAAAGATTTTAGCTATAATAACTGCCCTTTGAATTccactggcggat
ttaagacaatagagcaagtacgccAAAAAACATACTAAGGAGTGCAACGG
TCGTTAATTGACAattaaattacaattacaaatctcttaaCCCAGTGCAC
CTTGAAAAGTGTACACTTTACAGTGTGTCTCGAAAAAGATACTGTATCAG
ACCACTTATATTAAGTAGAAATAGTACTCTTTTCAATTGTTTATACGATA
TGATCTTTAATGTGTTGTTTGACAAAAGACATGTCTTTTAGttggcctta
attattagtcggccctaatttttgTCACCaaaccaaaatttagtcactta
gggccgactaaaataataattaaattttggcaatttctaaatttttagtc
gccccaaatttttagtcggccctaattttagtcacctcgtcaaaatttat
tcACTAAGGGCCAACTAATAATTAGattttggccatttctaaaCTTTTAG
TGGACCCAAATTTTAGtgggcccaaatttttagtcagccttaattttagt
caccaagccaaaatttagtcacttagggccgactaagttttggccgataa
ggtaaattACAGAATCAACGAATATCGTGTATTTTTCACCAATGTTCCAA
CTGTAATAGTACTGTACAAACAAAATCGATGGTAATTTCCCTTCTGTATT
TAGAAATGATAGGTAAACTTTTTCATATAcgataaatattttcaactcAC
AGTTCTTTTCTCGCTGTATGTGTCATATGTCCATGGTCAACTATAATAAA
CCATTGCTTGAAATCATTGCGGTTAATTTCTCATAGAGTGCAATGGAAAG
AAGCAAAGACGTGCACGCCCTGGGACGTGCTGGTACAGTTGACGAGGTAG
CCTCAGTTATCTGTTTCCTAGCGTCAGGAGCTGCTTCATATATGACTGGA
GCATGCATCCCAATCGATGGAGGACGATCAAACATGATTCCAGTCTAGAT
CTTCAACAATACGATATTTACAGTCTGTAACatggattaaaaaaaaattc
taccaaCAAAATCGAAGTACTTTGATTTCTTTGAACAGTGTGATTTTTAA
TGTTAGCTTactattttgtgaattttttgtGGTTTTGGGTGAAGCACTCT
TTTGtatattgtcaattttttcacttttctataaaagcaaatatctttgg
aaataatttttttactatGGTTGAATAAGAAATAAAAACGAAATACAAAA
AATTTACATGGTCGTATTAATTGATGCATCGAGAAGGAACTGAGAAGtga
ataatttcaatttgaagataattattttttggggaattaaAGGGGAAGGC
TCCGCTTACGCTTTTC

Coding sequence (CDS) from alignment at sc0002170:7024..13389+

>TCONS_00039698 ID=TCONS_00039698|Name=TCONS_00039698|organism=Clytia hemisphaerica|type=CDS|length=6264bp|location=Sequence derived from alignment at sc0002170:7024..13389+ (Clytia hemisphaerica)
ATGGCAGCTAATGTTACATTCGATTACTCTGGAAAAGTGGTGCTGGTCAC
AGGTGCTGGATCAGGCATCGGTCAAGGCACTGCATACATGTTCGCAAAGT
CTGGTGCCAAAATGGTCGTTACAGATCGTAACGAAGGCAAATTGAAAGAA
ACGGCAAACAAATGTGAAGAATTAAGCAAGCAAAAGGCTCTGGCAATTGT
TGGAGATATCACAGTTCAAAGTGACATTGAGAACATTATCAACACAACCA
TGGATACTTTCAAACGTCTCGATGTCTTGGTAAACAATGCTGGAGGTTTA
GTTATGGGAACATGTCTTCAAACATCAACGGAAGATTTTGATCAAATGAT
GAACATCAATGTCAGATCTGTTTTTCTTATCACCAAGATGGCTATCCCGC
ATTTGAAGAAAACTCAAGGCAACATTGTCAATGTTTCGACCCTTGGTAGC
TCGAGAccaCAAATTGGAGTAAATGCATATTGTACCAGCAAAGCAGCTTT
GGATCAATTTACGCGAGCTACTGCAATTGAGTTAGGAGCTGACCAAGTTC
GTGTCAATTGTGTCAACCCGAGCATTATTGCTACGGAAAATACCTCAAGT
AGCAACCATCCCACAATCTCAAGTGCAATGGAAAGAAGCAAAGACGTGCA
CGCCCTGGGACGTGCTGGTACAGTTGACGAGGTAGCCTCAGTTATCTGTT
TCCTAGCGTCAGGAGCTGCTTCATATATGACTGGAGCATGCATCCCAATC
GATGGAGGACGATCAAACATGATTCCAGTCTAGATGGCAGCTAATGTTAC
ATTCGATTACTCTGGAAAAGTGGTGCTGGTCACAGGTGCTGGATCAGGCA
TCGGTCAAGGCACTGCATACATGTTCGCAAAGTCTGGTGCCAAAATGGTC
GTTACAGATCGTAACGAAGGCAAATTGAAAGAAACGGCAAACAAATGTGA
AGAATTAAGCAAGCAAAAGGCTCTGGCAATTGTTGGAGATATCACAGTTC
AAAGTGACATTGAGAACATTATCAACACAACCATGGATACTTTCAAACGT
CTCGATGTCTTGGTAAACAATGCTGGAGGTTTAGTTATGGGAACATGTCT
TCAAACATCAACGGAAGATTTTGATCAAATGATGAACATCAATGTCAGAT
CTGTTTTTCTTATCACCAAGATGGCTATCCCGCATTTGAAGAAAACTCAA
GGCAACATTGTCAATGTTTCGACCCTTGGTAGCTCGAGAccaCAAATTGG
AGTAAATGCATATTGTACCAGCAAAGCAGCTTTGGATCAATTTACGCGAG
CTACTGCAATTGAGTTAGGAGCTGACCAAGTTCGTGTCAATTGTGTCAAC
CCGAGCATTATTGCTACGGAAAATACCTCAAGTAGCAACCATCCCACAAT
CTCAAGTGCAATGGAAAGAAGCAAAGACGTGCACGCCCTGGGACGTGCTG
GTACAGTTGACGAGGTAGCCTCAGTTATCTGTTTCCTAGCGTCAGGAGCT
GCTTCATATATGACTGGAGCATGCATCCCAATCGATGGAGGACGATCAAA
CATGATTCCAGTCTAGATGGCAGCTAATGTTACATTCGATTACTCTGGAA
AAGTGGTGCTGGTCACAGGTGCTGGATCAGGCATCGGTCAAGGCACTGCA
TACATGTTCGCAAAGTCTGGTGCCAAAATGGTCGTTACAGATCGTAACGA
AGGCAAATTGAAAGAAACGGCAAACAAATGTGAAGAATTAAGCAAGCAAA
AGGCTCTGGCAATTGTTGGAGATATCACAGTTCAAAGTGACATTGAGAAC
ATTATCAACACAACCATGGATACTTTCAAACGTCTCGATGTCTTGGTAAA
CAATGCTGGAGGTTTAGTTATGGGAACATGTCTTCAAACATCAACGGAAG
ATTTTGATCAAATGATGAACATCAATGTCAGATCTGTTTTTCTTATCACC
AAGATGGCTATCCCGCATTTGAAGAAAACTCAAGGCAACATTGTCAATGT
TTCGACCCTTGGTAGCTCGAGAccaCAAATTGGAGTAAATGCATATTGTA
CCAGCAAAGCAGCTTTGGATCAATTTACGCGAGCTACTGCAATTGAGTTA
GGAGCTGACCAAGTTCGTGTCAATTGTGTCAACCCGAGCATTATTGCTAC
GGAAAATACCTCAAGTAGCAACCATCCCACAATCTCAAGTGCAATGGAAA
GAAGCAAAGACGTGCACGCCCTGGGACGTGCTGGTACAGTTGACGAGGTA
GCCTCAGTTATCTGTTTCCTAGCGTCAGGAGCTGCTTCATATATGACTGG
AGCATGCATCCCAATCGATGGAGGACGATCAAACATGATTCCAGTCTAGA
TGGCAGCTAATGTTACATTCGATTACTCTGGAAAAGTGGTGCTGGTCACA
GGTGCTGGATCAGGCATCGGTCAAGGCACTGCATACATGTTCGCAAAGTC
TGGTGCCAAAATGGTCGTTACAGATCGTAACGAAGGCAAATTGAAAGAAA
CGGCAAACAAATGTGAAGAATTAAGCAAGCAAAAGGCTCTGGCAATTGTT
GGAGATATCACAGTTCAAAGTGACATTGAGAACATTATCAACACAACCAT
GGATACTTTCAAACGTCTCGATGTCTTGGTAAACAATGCTGGAGGTTTAG
TTATGGGAACATGTCTTCAAACATCAACGGAAGATTTTGATCAAATGATG
AACATCAATGTCAGATCTGTTTTTCTTATCACCAAGATGGCTATCCCGCA
TTTGAAGAAAACTCAAGGCAACATTGTCAATGTTTCGACCCTTGGTAGCT
CGAGAccaCAAATTGGAGTAAATGCATATTGTACCAGCAAAGCAGCTTTG
GATCAATTTACGCGAGCTACTGCAATTGAGTTAGGAGCTGACCAAGTTCG
TGTCAATTGTGTCAACCCGAGCATTATTGCTACGGAAAATACCTCAAGTA
GCAACCATCCCACAATCTCAAGTGCAATGGAAAGAAGCAAAGACGTGCAC
GCCCTGGGACGTGCTGGTACAGTTGACGAGGTAGCCTCAGTTATCTGTTT
CCTAGCGTCAGGAGCTGCTTCATATATGACTGGAGCATGCATCCCAATCG
ATGGAGGACGATCAAACATGATTCCAGTCTAGATGGCAGCTAATGTTACA
TTCGATTACTCTGGAAAAGTGGTGCTGGTCACAGGTGCTGGATCAGGCAT
CGGTCAAGGCACTGCATACATGTTCGCAAAGTCTGGTGCCAAAATGGTCG
TTACAGATCGTAACGAAGGCAAATTGAAAGAAACGGCAAACAAATGTGAA
GAATTAAGCAAGCAAAAGGCTCTGGCAATTGTTGGAGATATCACAGTTCA
AAGTGACATTGAGAACATTATCAACACAACCATGGATACTTTCAAACGTC
TCGATGTCTTGGTAAACAATGCTGGAGGTTTAGTTATGGGAACATGTCTT
CAAACATCAACGGAAGATTTTGATCAAATGATGAACATCAATGTCAGATC
TGTTTTTCTTATCACCAAGATGGCTATCCCGCATTTGAAGAAAACTCAAG
GCAACATTGTCAATGTTTCGACCCTTGGTAGCTCGAGAccaCAAATTGGA
GTAAATGCATATTGTACCAGCAAAGCAGCTTTGGATCAATTTACGCGAGC
TACTGCAATTGAGTTAGGAGCTGACCAAGTTCGTGTCAATTGTGTCAACC
CGAGCATTATTGCTACGGAAAATACCTCAAGTAGCAACCATCCCACAATC
TCAAGTGCAATGGAAAGAAGCAAAGACGTGCACGCCCTGGGACGTGCTGG
TACAGTTGACGAGGTAGCCTCAGTTATCTGTTTCCTAGCGTCAGGAGCTG
CTTCATATATGACTGGAGCATGCATCCCAATCGATGGAGGACGATCAAAC
ATGATTCCAGTCTAGATGGCAGCTAATGTTACATTCGATTACTCTGGAAA
AGTGGTGCTGGTCACAGGTGCTGGATCAGGCATCGGTCAAGGCACTGCAT
ACATGTTCGCAAAGTCTGGTGCCAAAATGGTCGTTACAGATCGTAACGAA
GGCAAATTGAAAGAAACGGCAAACAAATGTGAAGAATTAAGCAAGCAAAA
GGCTCTGGCAATTGTTGGAGATATCACAGTTCAAAGTGACATTGAGAACA
TTATCAACACAACCATGGATACTTTCAAACGTCTCGATGTCTTGGTAAAC
AATGCTGGAGGTTTAGTTATGGGAACATGTCTTCAAACATCAACGGAAGA
TTTTGATCAAATGATGAACATCAATGTCAGATCTGTTTTTCTTATCACCA
AGATGGCTATCCCGCATTTGAAGAAAACTCAAGGCAACATTGTCAATGTT
TCGACCCTTGGTAGCTCGAGAccaCAAATTGGAGTAAATGCATATTGTAC
CAGCAAAGCAGCTTTGGATCAATTTACGCGAGCTACTGCAATTGAGTTAG
GAGCTGACCAAGTTCGTGTCAATTGTGTCAACCCGAGCATTATTGCTACG
GAAAATACCTCAAGTAGCAACCATCCCACAATCTCAAGTGCAATGGAAAG
AAGCAAAGACGTGCACGCCCTGGGACGTGCTGGTACAGTTGACGAGGTAG
CCTCAGTTATCTGTTTCCTAGCGTCAGGAGCTGCTTCATATATGACTGGA
GCATGCATCCCAATCGATGGAGGACGATCAAACATGATTCCAGTCTAGAT
GGCAGCTAATGTTACATTCGATTACTCTGGAAAAGTGGTGCTGGTCACAG
GTGCTGGATCAGGCATCGGTCAAGGCACTGCATACATGTTCGCAAAGTCT
GGTGCCAAAATGGTCGTTACAGATCGTAACGAAGGCAAATTGAAAGAAAC
GGCAAACAAATGTGAAGAATTAAGCAAGCAAAAGGCTCTGGCAATTGTTG
GAGATATCACAGTTCAAAGTGACATTGAGAACATTATCAACACAACCATG
GATACTTTCAAACGTCTCGATGTCTTGGTAAACAATGCTGGAGGTTTAGT
TATGGGAACATGTCTTCAAACATCAACGGAAGATTTTGATCAAATGATGA
ACATCAATGTCAGATCTGTTTTTCTTATCACCAAGATGGCTATCCCGCAT
TTGAAGAAAACTCAAGGCAACATTGTCAATGTTTCGACCCTTGGTAGCTC
GAGAccaCAAATTGGAGTAAATGCATATTGTACCAGCAAAGCAGCTTTGG
ATCAATTTACGCGAGCTACTGCAATTGAGTTAGGAGCTGACCAAGTTCGT
GTCAATTGTGTCAACCCGAGCATTATTGCTACGGAAAATACCTCAAGTAG
CAACCATCCCACAATCTCAAGTGCAATGGAAAGAAGCAAAGACGTGCACG
CCCTGGGACGTGCTGGTACAGTTGACGAGGTAGCCTCAGTTATCTGTTTC
CTAGCGTCAGGAGCTGCTTCATATATGACTGGAGCATGCATCCCAATCGA
TGGAGGACGATCAAACATGATTCCAGTCTAGATGGCAGCTAATGTTACAT
TCGATTACTCTGGAAAAGTGGTGCTGGTCACAGGTGCTGGATCAGGCATC
GGTCAAGGCACTGCATACATGTTCGCAAAGTCTGGTGCCAAAATGGTCGT
TACAGATCGTAACGAAGGCAAATTGAAAGAAACGGCAAACAAATGTGAAG
AATTAAGCAAGCAAAAGGCTCTGGCAATTGTTGGAGATATCACAGTTCAA
AGTGACATTGAGAACATTATCAACACAACCATGGATACTTTCAAACGTCT
CGATGTCTTGGTAAACAATGCTGGAGGTTTAGTTATGGGAACATGTCTTC
AAACATCAACGGAAGATTTTGATCAAATGATGAACATCAATGTCAGATCT
GTTTTTCTTATCACCAAGATGGCTATCCCGCATTTGAAGAAAACTCAAGG
CAACATTGTCAATGTTTCGACCCTTGGTAGCTCGAGAccaCAAATTGGAG
TAAATGCATATTGTACCAGCAAAGCAGCTTTGGATCAATTTACGCGAGCT
ACTGCAATTGAGTTAGGAGCTGACCAAGTTCGTGTCAATTGTGTCAACCC
GAGCATTATTGCTACGGAAAATACCTCAAGTAGCAACCATCCCACAATCT
CAAGTGCAATGGAAAGAAGCAAAGACGTGCACGCCCTGGGACGTGCTGGT
ACAGTTGACGAGGTAGCCTCAGTTATCTGTTTCCTAGCGTCAGGAGCTGC
TTCATATATGACTGGAGCATGCATCCCAATCGATGGAGGACGATCAAACA
TGATTCCAGTCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_024002XLOC_024002Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039698-exon-sc0002170-1491911889:7024..7324TCONS_00039698-exon-sc0002170-1491911889:7024..7324Clytia hemisphaericaexon
TCONS_00039698-exon-sc0002170-1510915933:7024..7324TCONS_00039698-exon-sc0002170-1510915933:7024..7324Clytia hemisphaericaexon
TCONS_00039698-exon-sc0002170-1575043694:7024..7324TCONS_00039698-exon-sc0002170-1575043694:7024..7324Clytia hemisphaericaexon
TCONS_00039698-exon-sc0002170-1491911889:7984..8117TCONS_00039698-exon-sc0002170-1491911889:7984..8117Clytia hemisphaericaexon
TCONS_00039698-exon-sc0002170-1510915933:7984..8117TCONS_00039698-exon-sc0002170-1510915933:7984..8117Clytia hemisphaericaexon
TCONS_00039698-exon-sc0002170-1575043694:7984..8117TCONS_00039698-exon-sc0002170-1575043694:7984..8117Clytia hemisphaericaexon
TCONS_00039698-exon-sc0002170-1491911889:9303..9395TCONS_00039698-exon-sc0002170-1491911889:9303..9395Clytia hemisphaericaexon
TCONS_00039698-exon-sc0002170-1510915933:9303..9395TCONS_00039698-exon-sc0002170-1510915933:9303..9395Clytia hemisphaericaexon
TCONS_00039698-exon-sc0002170-1575043694:9303..9395TCONS_00039698-exon-sc0002170-1575043694:9303..9395Clytia hemisphaericaexon
TCONS_00039698-exon-sc0002170-1491911889:9578..9663TCONS_00039698-exon-sc0002170-1491911889:9578..9663Clytia hemisphaericaexon
TCONS_00039698-exon-sc0002170-1510915933:9578..9663TCONS_00039698-exon-sc0002170-1510915933:9578..9663Clytia hemisphaericaexon
TCONS_00039698-exon-sc0002170-1575043694:9578..9663TCONS_00039698-exon-sc0002170-1575043694:9578..9663Clytia hemisphaericaexon
TCONS_00039698-exon-sc0002170-1491911889:10626..10678TCONS_00039698-exon-sc0002170-1491911889:10626..10678Clytia hemisphaericaexon
TCONS_00039698-exon-sc0002170-1510915933:10626..10678TCONS_00039698-exon-sc0002170-1510915933:10626..10678Clytia hemisphaericaexon
TCONS_00039698-exon-sc0002170-1575043694:10626..10678TCONS_00039698-exon-sc0002170-1575043694:10626..10678Clytia hemisphaericaexon
TCONS_00039698-exon-sc0002170-1491911889:11536..11576TCONS_00039698-exon-sc0002170-1491911889:11536..11576Clytia hemisphaericaexon
TCONS_00039698-exon-sc0002170-1510915933:11536..11576TCONS_00039698-exon-sc0002170-1510915933:11536..11576Clytia hemisphaericaexon
TCONS_00039698-exon-sc0002170-1575043694:11536..11576TCONS_00039698-exon-sc0002170-1575043694:11536..11576Clytia hemisphaericaexon
TCONS_00039698-exon-sc0002170-1491911889:11763..11924TCONS_00039698-exon-sc0002170-1491911889:11763..11924Clytia hemisphaericaexon
TCONS_00039698-exon-sc0002170-1510915933:11763..11924TCONS_00039698-exon-sc0002170-1510915933:11763..11924Clytia hemisphaericaexon
TCONS_00039698-exon-sc0002170-1575043694:11763..11924TCONS_00039698-exon-sc0002170-1575043694:11763..11924Clytia hemisphaericaexon
TCONS_00039698-exon-sc0002170-1491911889:12860..13389TCONS_00039698-exon-sc0002170-1491911889:12860..13389Clytia hemisphaericaexon
TCONS_00039698-exon-sc0002170-1510915933:12860..13389TCONS_00039698-exon-sc0002170-1510915933:12860..13389Clytia hemisphaericaexon
TCONS_00039698-exon-sc0002170-1575043694:12860..13389TCONS_00039698-exon-sc0002170-1575043694:12860..13389Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039698-proteinTCONS_00039698-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002170supercontigsc0002170:7024..13389 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
256.127	252.613	339.938	339.277	172.151	135.976	343.052	342.782	669.953	457.701	326.449	599.106	63.8521	46.9642	26.5329	56.5144	8.31351	8.57128	7.42508	5.00191	2.12049	1.1881	74.0679	61.6855	0.336588	0.656498	3.90035	2.67189	21.062	25.344
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR016040NAD(P)-bd_dom
Blast
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BLAST of TCONS_00039698 vs. Swiss-Prot (Human)
Match: DCXR (L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 4.255e-31
Identity = 78/249 (31.33%), Postives = 128/249 (51.41%), Query Frame = 1 
Query:  277 SGKVVLVTGAGSGIGQGTAYMFAKSGAKMVVTDRNEGKLKETANKCEELSKQKALAIVGDITVQSDIENIINTTMDTFKRLDVLVNNAGGLVMGTCLQTSTEDFDQMMNINVRSVFLITKMAIPHL--KKTQGNIVNVSTLGSSRPQIGVNAYCTSKAALDQFTRATAIELGADQVRVNCVNPSIIAT---ENTSSSNHPTISSAMERSKDVHALGRAGTVDEVASVICFLASGAASYMTGACIPIDGG 1008
            +G+ VLVTGAG GIG+GT      +GA++V   R +  L     +C  +  +     +GD              + +   +D+LVNNA   ++   L+ + E FD+   +N+R+V  ++++    L  +   G IVNVS+  S R     + YC++K ALD  T+  A+ELG  ++RVN VNP+++ T   + T S  H    + + R      LG+   V+ V + I FL S  +   TG+ +P++GG
Sbjct:    6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGI--EPVCVDLGDWEAT-------ERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKA-KTMLNRIP----LGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGG 240
The following BLAST results are available for this feature:
BLAST of TCONS_00039698 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DCXR4.255e-3131.33L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 ... [more]
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