TCONS_00039698-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00039698-protein
Unique Name	TCONS_00039698-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	260

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00039698-protein ID=TCONS_00039698-protein|Name=TCONS_00039698-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MAANVTFDYSGKVVLVTGAGSGIGQGTAYMFAKSGAKMVVTDRNEGKLKE
TANKCEELSKQKALAIVGDITVQSDIENIINTTMDTFKRLDVLVNNAGGL
VMGTCLQTSTEDFDQMMNINVRSVFLITKMAIPHLKKTQGNIVNVSTLGS
SRPQIGVNAYCTSKAALDQFTRATAIELGADQVRVNCVNPSIIATENTSS
SNHPTISSAMERSKDVHALGRAGTVDEVASVICFLASGAASYMTGACIPI
DGGRSNMIPV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_024002	XLOC_024002	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00039698	TCONS_00039698	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002347	SDR_fam
IPR016040	NAD(P)-bd_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002347	Short-chain dehydrogenase/reductase SDR	PRINTS	PR00080	SDRFAMILY	coord: 140..148 score: 41.75 coord: 88..99 score: 55.88 coord: 160..179 score: 38.53
IPR002347	Short-chain dehydrogenase/reductase SDR	PRINTS	PR00081	GDHRDH	coord: 160..179 score: 38.43 coord: 218..238 score: 37.27 coord: 181..198 score: 35.53 coord: 134..150 score: 27.11 coord: 13..30 score: 46.19 coord: 88..99 score: 55.37
None	No IPR available	GENE3D	3.40.50.720		coord: 4..55 e-value: 3.4E-13 score: 48.8 coord: 56..259 e-value: 7.3E-60 score: 202.0
None	No IPR available	PFAM	PF13561	adh_short_C2	coord: 18..253 e-value: 6.8E-64 score: 215.5
IPR016040	NAD(P)-binding domain	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 11..256

Blast

[Close]

BLAST of TCONS_00039698-protein vs. Swiss-Prot (Human)
Match: DCXR (L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 3.194e-33
Identity = 78/249 (31.33%), Postives = 128/249 (51.41%), Query Frame = 0

Query:   10 SGKVVLVTGAGSGIGQGTAYMFAKSGAKMVVTDRNEGKLKETANKCEELSKQKALAIVGDITVQSDIENIINTTMDTFKRLDVLVNNAGGLVMGTCLQTSTEDFDQMMNINVRSVFLITKMAIPHL--KKTQGNIVNVSTLGSSRPQIGVNAYCTSKAALDQFTRATAIELGADQVRVNCVNPSIIAT---ENTSSSNHPTISSAMERSKDVHALGRAGTVDEVASVICFLASGAASYMTGACIPIDGG 253
            +G+ VLVTGAG GIG+GT      +GA++V   R +  L     +C  +  +     +GD              + +   +D+LVNNA   ++   L+ + E FD+   +N+R+V  ++++    L  +   G IVNVS+  S R     + YC++K ALD  T+  A+ELG  ++RVN VNP+++ T   + T S  H    + + R      LG+   V+ V + I FL S  +   TG+ +P++GG
Sbjct:    6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGI--EPVCVDLGDWEAT-------ERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKA-KTMLNRIP----LGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGG 240

The following BLAST results are available for this feature:

BLAST of TCONS_00039698-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00039698-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DCXR	3.194e-33	31.33	L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 ...	[more]

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TCONS_00039698-protein (polypeptide) - C. hemisphaerica