TCONS_00039603 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039603
Unique NameTCONS_00039603
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length597

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039603 ID=TCONS_00039603|Name=TCONS_00039603|organism=Clytia hemisphaerica|type=transcript|length=597bp
TCGAAGAAAGGTGGAAATCGAGCTTCTCCGCGTTTTTCGTACGAAAATCT
ACCATCTTGCGCAGATTGGAACAAACTGCGCATGCGCAATATGCTTTAAA
GAAACTGCTTGTCAGCTTGTCAATCCTCGCTCTTGCATACGCCTTGAACT
AAGTTAAGTTTCACATTTAAGTTTACTGTTATAACATTAATgctatttct
ttttcttacaCGCTCCCGAACCTGGAAAACCCGTTTATCAATGCTGGGCA
ACCATGACCCAACGATCAAGATGTTCTACTGGAGCGATACCGGGACACAA
CTATCATTGAGACATACATTCGAATTACAGTTGCAAAATACGTTACATTA
TAAAAATTCGACACTCTAACGTGGACATTTGAAACGATGAAAGAACTTTA
TACCAGAAACCAAACtataaaatgttttgaattttttacgTTATATTTCA
CATTATAAAGTGGGAGGACCTTTAACCTCCGAAGGTCGGCGTGACGGATG
CCTTGGTCGGAGATAATGTTTCCTCCAGAATAAACAGCCACTGGGGGTTT
TACGCTACATGCTTCGTCACAGTACAATTTAATTATTCCAAAGTTCT
Run BLAST on NCBI

transcript from alignment at sc0002147:17587..22665-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039603 ID=TCONS_00039603|Name=TCONS_00039603|organism=Clytia hemisphaerica|type=transcript|length=5079bp|location=Sequence derived from alignment at sc0002147:17587..22665- (Clytia hemisphaerica)
TCGAAGAAAGGTGGAAATCGAGCTTCTCCGCGTTTTTCGTACGAAAATCT
ACCATCTTGCGCAGATTGGAACAAACTGCGCATGCGCAATATGCTTTAAA
GAAACTGCTTGTCAGCTTGTCAATCCTCGCTCTTGCATACGCCTTGAACT
AAGTTAAGTTTCACATTTAAGTTTACTGTTATAACATTAATGCTATTTTT
AATTTTCTTTCTTACACGCTCCCAAACCTGGAAAACCCGTTTATCAATGC
TGGGCAACCATGACCCAACGATCAAGATGTTCTACTGGAGCGATACCGGG
ACACAACTATCGNAAGATGGCAGAAAATCAAGCGATAAAGGACGCTGTCC
GACAAGTTTTGAATGAAGATTTCAAACAAGATCAATCTAAAGCTATTGAA
AAACTAAAAACAAGATTAGATAAGAAGAGAAGCTATGACCAAATTCAGTT
CAATAAGAAAGGACATGAGGAACAGTTCCAGCACACCACTCGAGTATTAG
AGAATATGGACGACGCTCTGGATGCATTGGAAGAGAAAGATTTTGATGTT
GCAAAAAAACTTCCTGACTGAAGGTAAGAAACTTTTAGAAGAAAGGTTGC
AACACTTACAAATCGCTGACAGGGAGGGCTGGCTAGTGCTTAAACATTAT
AAAAGGAATATTTTGGTTTCGTCTGAAGACATTCAGGAAAAGCATTTAAA
GGACGCTCGTAAAACTGCTGAGCAGATAAAGGCCAAAATGGAACAAGAAA
ACAAGCCTAAAGACAGTAAATACATAAGGATGGATGAAATAACTTGTTAC
AACTGTAAACGTATCGGTCATATGTCAACTTTTTGTCCTTTTGTTCAAAA
CAAAACCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNAACTGGGAAATAATTCAATTTCAT
AAATGAATAAATGTATTCAAAGTTGGACAGTTTCTTTTTGTAGAACTACG
TGGTGTTCGTTAATTTTTTGGAAAAAATTGCGTTATATTTGATAAAGATA
CAGTTTATTGTCTCATGAATGCGTTTTCAAACACTTTTTCATACAGCGAA
TTTGTTTTACAATTTTTACTTTGTCATTTAATTCAGAGTTCTGGGAGTTC
AAACGATCAGATCCCCATCACTGGGGAAATATCACAATTCTCAAGCTTTT
GGAAAAACGAATTAAAAACACTATCTCTATTGTCTAATATAACAGATCAT
GGATATAAATTGCCATTTGTGAGCACTCCTCCTTCTTTTTATGCCAAAAA
TAACGCTTCAAGCCTGAACAATGCAGCTTTTGTTGAAGAGTCGATCGAAA
AACTAATTAAGGATGGTCGCATCAAGCAAGTAAAAGAAGCTCCTTTTTGC
GTGAATCCTTTGACTGTAGCAAAAAAGAATGAAAAATTACGACTTGTTAT
TGATTTGAGGCACATCAATTCTTTTATCGACCCACCNAGAATGAAAAATT
ACGAATTGTTATTGATTTGAGGCACATCAATTCTTTTATCGACCCACCGA
AATTTAAATATGAGGATTTGAAGACTGCTGCAGAAGTTTTTGAGAAAGAG
GATTTTTAATAACTTTTGACTTGACAAGTGGTTATCATCACGTACTTATT
AATGAGGACTTTCAGAGTTTTCTCGGTTTCGCGTGCAGCTTCGAAGGTGT
AACAAAATATTTTGTTTTTTGTGTCCTGCCTTTTGGGTTAAACAGTGCCT
GTTGGATTTTTACTTATCGATCGAGATATTCAACTTTTGTATCATAAATA
ATACAACTATTTTTCCTACTTGGATCCCTAGGGACGAAAACTTTGTTTCA
GATAGGATCTCTAAATCCATCGATACAGACAATTGGTCTATAGACATGGA
AAGTTTTAACTATATACTAAGTCAATTCAAAGTTATTACAGTGGATAGGT
TTGCAGATAACCTCAATACAAAAGTGAAGCGATTCAATTCAAGAGAATTT
TGTCCCGGATCATCCGGAGTTAACGCTTTTTCTTATCACTGGGGAAACAA
TGAAATTAAATGGCTTTGTCCACCAGTACATTTGATTGGAAGAACTATCT
CTCATTTTAAAAAACTGCCAAGGAAAAGGCATTCTTTTTGTACCTTTATG
GCCGTCTGCATACTATTGGCCATTGCTCACTTCAAATGGGAAAGAATTTA
AACGTTTTGTACAACGCTTTTTAGTTTTAGATCCTTTTTTCATAAACTAT
TCAAAGTTACGAAAGTTAATTGTATTTTTGATGGGTTTGCAAATTTTTAT
TCTCTTGCACTGTATATNCTATTGGCCATTGCTCACTTCAAATGGGAAAG
AATTTAAACGTTTTGTAAAACACTTTTTAGTTTTAGATCCTTTATTCCAA
AGTTAATTGTATTTTTGATGGGTTTGCCAAATTTTATTCTCTTACACTGT
ATATTGATTTCACATCTCGTATGCTATTGCATTCAAAATGCTGTTTTTAT
ATCCTTTTTGATGCTTGAAACTTCAAGTGATCATGTCATTGTTGTATATG
ATATCAAATGCATGAAACTGTTGTCTAGATGACTATGTATCAATGAACTG
AAAAACGTTTTATTTTTATTTTTTCACGCAAAAATTAATTACCAATAATG
ATTTGACGACGACACAAGCTGTGGTATCAATGCTTTGTTGCAATATCAAT
TATGGTATCAATGCTTTGTTGCAATATCAATTATGGTATCAATGCTTTGT
TGCAATATCAATTATGGTATCAATGCTTTGTCGCAATATCAATTATGGTA
TCAATGCTTTGTTGCAATATCAATTATGGTATCAATGCTTTGTCGCAATA
TCAATTATGGTATCAATGCCCTGTTGCAATATCAATTATGGTATCAATGC
TTTGTTGCAATACCAATTATGGTATCAATGCTTTGTTGCAATATCAATTA
TGGTATCAATGCTCTGTTACAATATCAATTATGGTATCAATGCTTTGTTG
CAATACCAATTACGGTATCAATGCTTTGTTGCAATACCAACTATGGTATC
AATGCTTTGTTGCAATACCAATTACGGTATCAATGCTTTGTTGCAATACC
AACTATGCTATCGGTGTTTAGTTGCAATTTGAATTATGGTATCAATGCCC
TGTTGCAATACCAATTACGGTATCAATGCTTTGTTGCAATACCAACTATG
CTATCGGTGTTTAGTTGCAATTTGAATTATGGTATCAATGCCCTGTTGCA
ATACCAATTACGGTATCAATGCTTTGTTGCAATACCAACTATGCTATCGG
TGTTTAGTTGCAATTTGAATTATGGTATCAATGCCCTGTTGCAATATCAA
TTATGGTATCAATGCTTTGTCGCAATACCAATTATGGTATCAATGCTTTG
TTGCAATACCAATTACAGTATCAATGCTTTGTTACAATACCAACTATGCT
ATCGATGTTTTGTTGCAATTTGAATTATGGTATCAATGCTTTGTTGCAAT
ACCAACTGTAATATCAATGCTCTGTTACAATATCAATTATGGTATCAATG
CTCTGTTGCAATATCAATTACGGTATCAATGCTTTGTTGCAATACCGACT
ATGGTATCAATGCTTTGTTGCAATACATTATCTTCAGGTATAAGAGTTAT
TTTTAAAAACTTTTTTCATCCTTATTTTCTTAAAGCATCCCCGAAGAACC
CTCTAGAAAGGCTCGAAGGCATCAAAGACGAAAAACAATCATCTGGTTTT
TCTCCCCCACAGGAAGTCCTTTAGTCAAACTGGCATTCGAGGGTGGCAAA
CGACTAATTTTGTCCAAAGATTGAAATCCAAAAAGAATGCCTAAAGAGAT
TCTCACAACAGATTTATAATCAAAGCCATTATTGATAAGTTTATTTCGAC
AGAAAATCTTTTAGTTTCATTCTGATGACTATTCTTCGCTTTTCAGGATT
TTTACGTATCAGCAAAATGCTGCAGATACAAATCCAACACATTACTTTTT
GCCAATCAGGGGTGAAAATCTTTTTACCAAAGTCAAAAACAGACCAAATT
AGAGAGGGGAATGCCGTCTTCATCAGTGCNGGTGAAAATCTTTTTACCAA
AGTCAAAACAGACCAAATTAGAGAGGGGAATACCGCCTTCATCAGTGCCA
AAGGTTCTTATTACCCTATTTACTAGTTACAGAAATATATCAATCTTGCT
AAATTTTCCCGACCAAACGATTATCTGTTTTGCCGACTCTTTAAGTGTAA
GATTGGTCATTCGGCCATGGAAACCTACCAATTTCATACACCACAGCCAG
AGACTCATTGAAGGGCCACTTAACCGGTATTTTTGAAGACAAGGCTAAGT
ATGGCTTGCATTCTCTTCGTTCTGGGGTTACAGCCGAAGCAGCTAACAAC
GGTGTGTCAGATAGAATGATCTCAAAACATGGTCGCTGGTCGTCCAATAC
TAGTCGTGATACGTACATTAAAGANCCAACGATCGAAGAAAGGTGGAAAT
CGAGCTTCTCCGCGTTTTTCGTACGAAAATCTACCATCTTGCGCAGATTG
GAACAAACTGCGCATGTGCAATATGCTTTAAAGAAGCTGCTTGTCAGCTT
GTCCATCCTCGCTCTTGCATACGCCTTGAACTAAGTTAAGTTTCACATTT
AAGTTTACTGTTATGACATTAATGCTATTTCTTTTTCTTACACGCTCCCG
AACCTGGAAAACCCGTTTATCAATGCTGGGCAACCATGACCCAACGATCA
AGATGTTCTACTGGAGCGATACCGGGACACAACTATCATTGAGACATACA
TTCGAATTACAGTTGCAAAATACGTTACATTATAAAAATTCGACACTCTA
ACGTGGACATTTGAAACGATGAAAGAACTTTATACCAGAAACCAAACTAT
AAAATGTTTTGAATTTTTTACGTTATATTTCACATTATAAAGTGGGAGGA
CCTTTAACCTCCGAAGGTCGGCGTGACGGATGCCTTGGTCGGAGATAATG
TTTCCTCCAGAATAAACAGCCACTGGGGGTTTTACGCTACATGCTTCGTC
ACAGTACAATTTAATTATTCCAAAGTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023919XLOC_023919Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039603-exon-sc0002147-1575043694:22481..22665TCONS_00039603-exon-sc0002147-1575043694:22481..22665Clytia hemisphaericaexon
TCONS_00039603-exon-sc0002147-1575043694:17587..17998TCONS_00039603-exon-sc0002147-1575043694:17587..17998Clytia hemisphaericaexon
TCONS_00039603-exon-sc0002147-1510915933:22481..22665TCONS_00039603-exon-sc0002147-1510915933:22481..22665Clytia hemisphaericaexon
TCONS_00039603-exon-sc0002147-1510915933:17587..17998TCONS_00039603-exon-sc0002147-1510915933:17587..17998Clytia hemisphaericaexon
TCONS_00039603-exon-sc0002147-1491911889:22481..22665TCONS_00039603-exon-sc0002147-1491911889:22481..22665Clytia hemisphaericaexon
TCONS_00039603-exon-sc0002147-1491911889:17587..17998TCONS_00039603-exon-sc0002147-1491911889:17587..17998Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002147supercontigsc0002147:17587..22665 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.1493	9.14225	8.4977	4.98892	0.531385	0.866101	2.21393	1.74207	2.48094	1.2274	2.93619	2.89865	1.84059	3.148	2.28517	1.53558	0.962503	2.30841	6.05369	3.2088	1.26149	2.07972	1.74259	3.07667	0.568454	0.537504	0.356902	1.33507	1.77083	0.892199
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039603 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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