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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039590 ID=TCONS_00039590|Name=TCONS_00039590|organism=Clytia hemisphaerica|type=transcript|length=3350bpRun BLAST on NCBI protein sequence of TCONS_00039590-protein >TCONS_00039590-protein ID=TCONS_00039590-protein|Name=TCONS_00039590-protein|organism=Clytia hemisphaerica|type=polypeptide|length=830bp MDDPDVGEPPGDPVATAKVEDVIKYLKNVSSTVFEEDNQSVPLGQAFENGRun BLAST on NCBI transcript from alignment at sc0002144:9403..20575+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00039590 ID=TCONS_00039590|Name=TCONS_00039590|organism=Clytia hemisphaerica|type=transcript|length=11173bp|location=Sequence derived from alignment at sc0002144:9403..20575+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0002144:9403..20575+ >TCONS_00039590 ID=TCONS_00039590|Name=TCONS_00039590|organism=Clytia hemisphaerica|type=CDS|length=27390bp|location=Sequence derived from alignment at sc0002144:9403..20575+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00039590 vs. Swiss-Prot (Human)
Match: DYHC1 (Cytoplasmic dynein 1 heavy chain 1 OS=Homo sapiens GN=DYNC1H1 PE=1 SV=5) HSP 1 Score: 1013.45 bits (2619), Expect = 0.000e+0 Identity = 510/785 (64.97%), Postives = 629/785 (80.13%), Query Frame = 3
Query: 1020 ISKFITDTQLKSILVCQTTSLVEEDGGSADNLKIQIEYSIQSAVNYISQKDNTIAFIKRGMVIEGDKKTYKQVQMINLENAAPFDTLHSYVSNAVSPFFKSYVKKSGKSDREGDKMVPSVEKKIAELEMSLLHLQQNIDIPEISLVIHPHVQALLKKAESEKRKVDSEDFADKLEDSTFLNALQNGVNRWIREIQKVTKLERDPASGNALQEISFWLNLEKALHRIEEKQQSPEVKLTLDILKHSKRFHAIVSFTNDTGLKQGLATVAAYNPLMKDFPLEQLLSATELDRIKEALTVIFNHIRKIKLSQYPITRCLKLIEAISRDLMSQVLKVLGTRKLMLMNYDEFEKVMVSTFSVFATWDDEYDKTQQILRELAKKKRDDSFKTMWRINPAHKKLQARIDVLKKFRKQHEQLRAVILRVLRP--TDKPALTDGSV------KGXXXXXXXXXXXXXQEVDMAYENFKDVDPLDISKEGVDSWENAFKRYGERIDRVETRITARLRDQLGTAKNANEMFRIFSRFNALFVRPRIRGAIREYQKLLIGLVKEDIESLHDKFKVQYPKSKASKMSKVRDLPPLSGSIIWAKEIERQLRAYLRRVEDVLGKDWESHIEGQGLKADGDQFRQKLSTQEIFDDWSQQVQKRALLVVGRIFAIYSKKA-GAEKSLFKIRVNFTRDVITLAKEVRNLKWLGFRVPLAIVRQANDANQYYPFAISLIESIRTYEITNDKVFDKMSISPLVAGVRRDIQTLINEGMSLDWPSYKLMPYVMRLSEAITGYQEKV 3347
+ KF++D Q+ ++LV ++T L E+ G + K I Y+I ++Y K N++AFIKR VI+ DK Q++++ L +P++TLHS++SNAV+PFFKSY+++SGK+DR+GDKM PSVEKKIAELEM LLHLQQNI+IPEISL IHP + + K+ K DF DK+ED TFLN LQ+GVNRWIREIQKVTKL+RDPASG ALQEISFWLNLE+AL+RI+EK++SPEV LTLDILKH KRFHA VSF DTGLKQ L TV YNPLMKDFPL LLSATELD+I++AL IF H+RKI+ ++YPI R L+L+EAISRDL SQ+LKVLGTRKLM + Y+EFEKVMV+ F VF TWDDEY+K Q +LR++ K+KR+++ K +WRINPAH+KLQAR+D ++KFR+QHEQLRAVI+RVLRP T G V K + D ADANA +EV++AYEN K+VD LD+SKEG ++WE A KRY ERIDRVETRITARLRDQLGTAKNANEMFRIFSRFNALFVRP IRGAIREYQ LI VK+DIESLHDKFKVQYP+S+A KMS VRDLPP+SGSIIWAK+I+RQL AY++RVEDVLGK WE+H+EGQ LK DGD FR KL+TQEIFDDW+++VQ+R L V GRIF I S + G ++ K++VNF ++ITL+KEVRNLKWLGFRVPLAIV +A+ ANQ YPFAISLIES+RTYE T +KV ++ +IS LVAG+++++Q LI EG++L W SYKL PYV RL+E + +QEKV
Sbjct: 65 MRKFLSDPQVHTVLVERST-LKEDVGDEGEEEKEFISYNINIDIHY-GVKSNSLAFIKRTPVIDADKPVSSQLRVLTLSEDSPYETLHSFISNAVAPFFKSYIRESGKADRDGDKMAPSVEKKIAELEMGLLHLQQNIEIPEISLPIHPMITNVAKQCYERGEKPKVTDFGDKVEDPTFLNQLQSGVNRWIREIQKVTKLDRDPASGTALQEISFWLNLERALYRIQEKRESPEVLLTLDILKHGKRFHATVSFDTDTGLKQALETVNDYNPLMKDFPLNDLLSATELDKIRQALVAIFTHLRKIRNTKYPIQRALRLVEAISRDLSSQLLKVLGTRKLMHVAYEEFEKVMVACFEVFQTWDDEYEKLQVLLRDIVKRKREENLKMVWRINPAHRKLQARLDQMRKFRRQHEQLRAVIVRVLRPQVTAVAQQNQGEVPEPQDMKVAEVLFDAADANAIEEVNLAYENVKEVDGLDVSKEGTEAWEAAMKRYDERIDRVETRITARLRDQLGTAKNANEMFRIFSRFNALFVRPHIRGAIREYQTQLIQRVKDDIESLHDKFKVQYPQSQACKMSHVRDLPPVSGSIIWAKQIDRQLTAYMKRVEDVLGKGWENHVEGQKLKQDGDSFRMKLNTQEIFDDWARKVQQRNLGVSGRIFTIESTRVRGRTGNVLKLKVNFLPEIITLSKEVRNLKWLGFRVPLAIVNKAHQANQLYPFAISLIESVRTYERTCEKVEERNTISLLVAGLKKEVQALIAEGIALVWESYKLDPYVQRLAETVFNFQEKV 847 The following BLAST results are available for this feature:
BLAST of TCONS_00039590 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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