TCONS_00039327 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039327
Unique NameTCONS_00039327
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length727

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039327 ID=TCONS_00039327|Name=TCONS_00039327|organism=Clytia hemisphaerica|type=transcript|length=727bp
TTTTAAACGACACACTTGATACAACCTGGCTATCATTAGCCTTTTTCATA
GGATTCATTTTTTAGTGTATGAAatttttctacgtcactgcagtgAATCG
AATAAATGGTTTTTGAATTCCCAAGCCATAAATTAtgacaaaaatcaatt
tttttaacatttttttcctTACTGTAAAGGGGGGAATCTGCACAGATTTG
GTAATCTTTCCCCTGTACACTTTTCCTACGAGGGCACCGAACGAtcaaac
tttgaatatgatttttcaATCTTCCAGTCAAACTCTATTAGGAGAAGGTT
GCGCGTCTATCTTGACTTCAGTATACACACAACAAACAAAATGGTTTGTC
AAAGGATTCACCAAAGATGTTATCACCACTGATTTAAAAGGTTCATGTAC
CATCAATTCCGGTGGCTCATCAACTGCAGCAGCCATGGTTTCTGCTATTG
TTGCTCTTGCTCTCAGTGTTAATCAGCAATTGACTTGGCGTGACGTTCAA
TACCTGATCATCAAATCATCCAATCAGAACAATCTTCCTGTCACGTGGTA
CACCAATGGTGTTGGTCTTCGCTTCAACTCGCGTTACGGTTTCGGGATTC
TCGATGCCGGAAAAATGGTCACCCTTTctaaaacttggaaaacaacAGGC
GTTAATATGGTTTCACAAAAGGTTCTAGTCACAAAATCAATGGTGTTGAC
TTCATTAAAAAAGAACGAACTAATCAA
Run BLAST on NCBI

protein sequence of TCONS_00039327-protein

>TCONS_00039327-protein ID=TCONS_00039327-protein|Name=TCONS_00039327-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
MTKINFFNIFFLTVKGGICTDLVIFPLYTFPTRAPNDQTLNMIFQSSSQT
LLGEGCASILTSVYTQQTKWFVKGFTKDVITTDLKGSCTINSGGSSTAAA
MVSAIVALALSVNQQLTWRDVQYLIIKSSNQNNLPVTWYTNGVGLRFNSR
YGFGILDAGKMVTLSKTWKTTGVNMVSQKVLVTKSMVLTSLKKNELI
Run BLAST on NCBI

transcript from alignment at sc0002074:28552..30699-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039327 ID=TCONS_00039327|Name=TCONS_00039327|organism=Clytia hemisphaerica|type=transcript|length=2148bp|location=Sequence derived from alignment at sc0002074:28552..30699- (Clytia hemisphaerica)
TTTTAAACGACACACTTGATACAACCTGGCTATCATTAGCCTTTTTCATA
GGATTCATTTTTTAGTGTATGAAATTTTTCTACGTCACTGCAGTGAATCG
AATAAATGGTTTTTGAATTCCCAAGCCATAAATTATGACAAAAATCAATT
TTTTTAACATTTTTTTCCTTACTGTAAAGGGGGGAATCTGCACAGATTTG
GTAATCTTTCCCCTGTACACTTTTCCTACGAGGGCACCGAACGATCAAAC
TTTGAATATGATTTTTCAATCTTCCAGTCAAACTCTATTAGGAGAAGGTT
GCGCGTCTATCTTGACTTCAGTATACACACAACAAACAAAATGGTTTGTC
AAAGGATTCACCAAAGATGTTGTAAGTCTCTCTACCCATTCCTAAAACTG
ACTTAAAAAACTTAAGCTTACAAGTAAACCATAATATTTAAATTTTGTCC
GATCCAGCAAAGTAAAGGTGTTCCCTATGGGGGAATAAGACGAACAGTCA
TGGGGTTCTAAATCCAAAAATAAAACAAAACTCTTTGCAAATATCTGAAA
ATAGGGGTTCAGCTTATCCTTCCAAAAAAAAAAGAAGAATGAAAGTAATG
GGATTTCATAGCCCTGTTGAATTGAGAAAGATCCTCAATCGTATTATAGT
CTAGCTCGGGGGAAAATCCCCCAGAACCCCTGTAAGGATATTATTAAATC
GACAATATTTTCAAAAATCATAAAAGGATCGCGGTTTTTCCCAAATTTAT
TGAGAAATCCCAAAGAGAAAATGTGGGAGATCAAAAATGCAAGAATCAGC
AGATTCCTAAAAACTAAATCATTTAGGCCTCCCTCCCTTCTAGTTTTCCT
TAAAGACTACCTCCATCAATAGCGAGTTTATGTATTTATTTGCACCCTTT
GAGGACGGTGGAGTGATAAAAGCCATTTGAAAAAAACCCGCTGTTTTGAC
CAGAAAAACTCGAGGACGGTAAAAGGCGCTAATTTACCATATTTATCAGT
CAATCGGGATCTAGACAAATTAGAACCTTACCGTCTCCGTTACAGAAAAA
CACAGATACATAAACTAACCAACTATCACCAAAATACAGATTCTTATTAC
CTTTACACTTTAGATCACCACTGATTTAAAAGGTTCATGTACCATCAATT
CCGGTGGCTCATCAACTGCAGCAGCCATGGTTTCTGCTATTGTTGCTCTT
GCTCTCAGTGTTAAGTAGGTATCATGCTCTTCTTCATATATAGCCTGAAA
AACGAGTGAGAAACAGATTTACCATTATTTTTTCTTCTAATTATCGCGGC
ATTTCCCTTTTATCTTAAATATCTCTTCATTGATATCTATTAGTTATCGC
ATAGTGCCGAAAGGTGTTTGATAATTCCAGCCATGGCGTACTAAATTTAT
AACATGGTTCCAGCCAAAAAATATGGGTAGCTTATATAGATAAAATGTGT
ACTTGACGGATGACAACAAGTCAAAACATATCTTTCAGTCAGCAATTGAC
TTGGCGTGACGTTCAATACCTGATCATCAAATCATCCAATCAGAACAATC
TTCCTGTCACGTGGTACACCAATGGTGTTGGTCTTCGCTTCAACTCGCGT
TACGGTTTCGGGATTCTCGATGCCGGAAAAATGGTCACCCTTTCTAAAAC
TTGGAAAACAACAGGCGTTAATATGGTTTCACAAAAGGTTCTAGTCACAA
AATCAATGNGGAAAACAACAGGCGTTATTATGGTTTCACAAAAGGTTCTA
GTCACAAAATCAATGTAAGTATTTTTCGTCAATATCAAATTTAGTTGTGC
TTTGTATAAAAATTTTGAATGTATTGTTTTAAGGACAATTTTCTGAGACA
TTAAATTATTTTTTTATGAATAGAAAGTAGTCTTAATAACATCCGCTGTT
CTACACAATTTTTTGCATTTGAATATGGTTACTTTATGCAAGGGGATCTT
ACATTTTTCACAAGAGCTCTCCAACCTACAATACCGTCGTCGAAAAGCAT
TTTCCTGTTTGTTGTTGTTGTCAGTCTTCTTTAAAAGACGACCGCACCGC
TAAGGGTTGATATGTGTATTGACATTGATTACTTACACGTCATTATCTTT
TCATTGTTTTAGGGTGTTGACTTCATTAAAAAAGAACGAACTAATCAA

Coding sequence (CDS) from alignment at sc0002074:28552..30699-

>TCONS_00039327 ID=TCONS_00039327|Name=TCONS_00039327|organism=Clytia hemisphaerica|type=CDS|length=2364bp|location=Sequence derived from alignment at sc0002074:28552..30699- (Clytia hemisphaerica)
GGTGTTGACTTCATTAAAAAAGAACGAACTAATCTCAGCAATTGACTTGG
CGTGACGTTCAATACCTGATCATCAAATCATCCAATCAGAACAATCTTCC
TGTCACGTGGTACACCAATGGTGTTGGTCTTCGCTTCAACTCGCGTTACG
GTTTCGGGATTCTCGATGCCGGAAAAATGGTCACCCTTTCTAAAACTTGG
AAAACAACAGGCGTTAATATGGTTTCACAAAAGGTTCTAGTCACAAAATC
AATATCACCACTGATTTAAAAGGTTCATGTACCATCAATTCCGGTGGCTC
ATCAACTGCAGCAGCCATGGTTTCTGCTATTGTTGCTCTTGCTCTCAGTG
TTAAATGACAAAAATCAATTTTTTTAACATTTTTTTCCTTACTGTAAAGG
GGGGAATCTGCACAGATTTGGTAATCTTTCCCCTGTACACTTTTCCTACG
AGGGCACCGAACGATCAAACTTTGAATATGATTTTTCAATCTTCCAGTCA
AACTCTATTAGGAGAAGGTTGCGCGTCTATCTTGACTTCAGTATACACAC
AACAAACAAAATGGTTTGTCAAAGGATTCACCAAAGATGTTGGTGTTGAC
TTCATTAAAAAAGAACGAACTAATCTCAGCAATTGACTTGGCGTGACGTT
CAATACCTGATCATCAAATCATCCAATCAGAACAATCTTCCTGTCACGTG
GTACACCAATGGTGTTGGTCTTCGCTTCAACTCGCGTTACGGTTTCGGGA
TTCTCGATGCCGGAAAAATGGTCACCCTTTCTAAAACTTGGAAAACAACA
GGCGTTAATATGGTTTCACAAAAGGTTCTAGTCACAAAATCAATATCACC
ACTGATTTAAAAGGTTCATGTACCATCAATTCCGGTGGCTCATCAACTGC
AGCAGCCATGGTTTCTGCTATTGTTGCTCTTGCTCTCAGTGTTAAATGAC
AAAAATCAATTTTTTTAACATTTTTTTCCTTACTGTAAAGGGGGGAATCT
GCACAGATTTGGTAATCTTTCCCCTGTACACTTTTCCTACGAGGGCACCG
AACGATCAAACTTTGAATATGATTTTTCAATCTTCCAGTCAAACTCTATT
AGGAGAAGGTTGCGCGTCTATCTTGACTTCAGTATACACACAACAAACAA
AATGGTTTGTCAAAGGATTCACCAAAGATGTTGGTGTTGACTTCATTAAA
AAAGAACGAACTAATCTCAGCAATTGACTTGGCGTGACGTTCAATACCTG
ATCATCAAATCATCCAATCAGAACAATCTTCCTGTCACGTGGTACACCAA
TGGTGTTGGTCTTCGCTTCAACTCGCGTTACGGTTTCGGGATTCTCGATG
CCGGAAAAATGGTCACCCTTTCTAAAACTTGGAAAACAACAGGCGTTAAT
ATGGTTTCACAAAAGGTTCTAGTCACAAAATCAATATCACCACTGATTTA
AAAGGTTCATGTACCATCAATTCCGGTGGCTCATCAACTGCAGCAGCCAT
GGTTTCTGCTATTGTTGCTCTTGCTCTCAGTGTTAAATGACAAAAATCAA
TTTTTTTAACATTTTTTTCCTTACTGTAAAGGGGGGAATCTGCACAGATT
TGGTAATCTTTCCCCTGTACACTTTTCCTACGAGGGCACCGAACGATCAA
ACTTTGAATATGATTTTTCAATCTTCCAGTCAAACTCTATTAGGAGAAGG
TTGCGCGTCTATCTTGACTTCAGTATACACACAACAAACAAAATGGTTTG
TCAAAGGATTCACCAAAGATGTTGGTGTTGACTTCATTAAAAAAGAACGA
ACTAATCTCAGCAATTGACTTGGCGTGACGTTCAATACCTGATCATCAAA
TCATCCAATCAGAACAATCTTCCTGTCACGTGGTACACCAATGGTGTTGG
TCTTCGCTTCAACTCGCGTTACGGTTTCGGGATTCTCGATGCCGGAAAAA
TGGTCACCCTTTCTAAAACTTGGAAAACAACAGGCGTTAATATGGTTTCA
CAAAAGGTTCTAGTCACAAAATCAATATCACCACTGATTTAAAAGGTTCA
TGTACCATCAATTCCGGTGGCTCATCAACTGCAGCAGCCATGGTTTCTGC
TATTGTTGCTCTTGCTCTCAGTGTTAAATGACAAAAATCAATTTTTTTAA
CATTTTTTTCCTTACTGTAAAGGGGGGAATCTGCACAGATTTGGTAATCT
TTCCCCTGTACACTTTTCCTACGAGGGCACCGAACGATCAAACTTTGAAT
ATGATTTTTCAATCTTCCAGTCAAACTCTATTAGGAGAAGGTTGCGCGTC
TATCTTGACTTCAGTATACACACAACAAACAAAATGGTTTGTCAAAGGAT
TCACCAAAGATGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023701XLOC_023701Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039327-exon-sc0002074-1575043694:30329..30699TCONS_00039327-exon-sc0002074-1575043694:30329..30699Clytia hemisphaericaexon
TCONS_00039327-exon-sc0002074-1575043694:29486..29586TCONS_00039327-exon-sc0002074-1575043694:29486..29586Clytia hemisphaericaexon
TCONS_00039327-exon-sc0002074-1575043694:28993..29211TCONS_00039327-exon-sc0002074-1575043694:28993..29211Clytia hemisphaericaexon
TCONS_00039327-exon-sc0002074-1575043694:28552..28587TCONS_00039327-exon-sc0002074-1575043694:28552..28587Clytia hemisphaericaexon
TCONS_00039327-exon-sc0002074-1510915933:30329..30699TCONS_00039327-exon-sc0002074-1510915933:30329..30699Clytia hemisphaericaexon
TCONS_00039327-exon-sc0002074-1510915933:29486..29586TCONS_00039327-exon-sc0002074-1510915933:29486..29586Clytia hemisphaericaexon
TCONS_00039327-exon-sc0002074-1510915933:28993..29211TCONS_00039327-exon-sc0002074-1510915933:28993..29211Clytia hemisphaericaexon
TCONS_00039327-exon-sc0002074-1510915933:28552..28587TCONS_00039327-exon-sc0002074-1510915933:28552..28587Clytia hemisphaericaexon
TCONS_00039327-exon-sc0002074-1491911889:30329..30699TCONS_00039327-exon-sc0002074-1491911889:30329..30699Clytia hemisphaericaexon
TCONS_00039327-exon-sc0002074-1491911889:29486..29586TCONS_00039327-exon-sc0002074-1491911889:29486..29586Clytia hemisphaericaexon
TCONS_00039327-exon-sc0002074-1491911889:28993..29211TCONS_00039327-exon-sc0002074-1491911889:28993..29211Clytia hemisphaericaexon
TCONS_00039327-exon-sc0002074-1491911889:28552..28587TCONS_00039327-exon-sc0002074-1491911889:28552..28587Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039327-proteinTCONS_00039327-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002074supercontigsc0002074:28552..30699 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0684899	0.0361221	0	0	0	0.0930379	0.993026	1.02876	0.462823	0.555175	0.208168	0.436259	0.0455504	0.331132	0.327729	0.166943	1.85174	1.27582	0.0728062	0	0.706437	0.564109	0.403554	0.896772	0.0806149	0.446215	0	0.138783	1.97662	1.91236
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000209Peptidase_S8/S53_dom
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
[Close]
BLAST of TCONS_00039327 vs. Swiss-Prot (Human)
Match: NEC2 (Neuroendocrine convertase 2 OS=Homo sapiens GN=PCSK2 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.279e-19
Identity = 61/162 (37.65%), Postives = 85/162 (52.47%), Query Frame = 3 
Query:  249 TLNMIFQSSSQTLLGEGCASILTSVYTQQTKWFVKGFTKDVITTDLKGSCTINSGGXXXXXXXXXXXXXXXXXXNQQLTWRDVQYLIIKSSNQNNLP---VTWYTNGVGLRFNSRYGFGILDAGKMVTLSKTWKTT--------GVNMVSQKVLVTKSMVLT 701
            ++N         L  E C+S L S ++   K   +     V TTDL G+CT+   G+S AA   + + ALAL  N  LTWRD+Q+L + +S +N L      W  NGVGL FN  +G+G+LDAG MV ++K WKT         G     +K+  T  +VLT
Sbjct:  330 SINSAINDGRTALYDESCSSTLASTFSNGRK---RNPEAGVATTDLYGNCTLRHSGTSAAAPEAAGVFALALEANLGLTWRDMQHLTVLTSKRNQLHDEVHQWRRNGVGLEFNHLFGYGVLDAGAMVKMAKDWKTVPERFHCVGGSVQDPEKIPSTGKLVLT 488
The following BLAST results are available for this feature:
BLAST of TCONS_00039327 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NEC21.279e-1937.65Neuroendocrine convertase 2 OS=Homo sapiens GN=PCS... [more]
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