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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00039327 ID=TCONS_00039327|Name=TCONS_00039327|organism=Clytia hemisphaerica|type=transcript|length=727bp
TTTTAAACGACACACTTGATACAACCTGGCTATCATTAGCCTTTTTCATA
GGATTCATTTTTTAGTGTATGAAatttttctacgtcactgcagtgAATCG
AATAAATGGTTTTTGAATTCCCAAGCCATAAATTAtgacaaaaatcaatt
tttttaacatttttttcctTACTGTAAAGGGGGGAATCTGCACAGATTTG
GTAATCTTTCCCCTGTACACTTTTCCTACGAGGGCACCGAACGAtcaaac
tttgaatatgatttttcaATCTTCCAGTCAAACTCTATTAGGAGAAGGTT
GCGCGTCTATCTTGACTTCAGTATACACACAACAAACAAAATGGTTTGTC
AAAGGATTCACCAAAGATGTTATCACCACTGATTTAAAAGGTTCATGTAC
CATCAATTCCGGTGGCTCATCAACTGCAGCAGCCATGGTTTCTGCTATTG
TTGCTCTTGCTCTCAGTGTTAATCAGCAATTGACTTGGCGTGACGTTCAA
TACCTGATCATCAAATCATCCAATCAGAACAATCTTCCTGTCACGTGGTA
CACCAATGGTGTTGGTCTTCGCTTCAACTCGCGTTACGGTTTCGGGATTC
TCGATGCCGGAAAAATGGTCACCCTTTctaaaacttggaaaacaacAGGC
GTTAATATGGTTTCACAAAAGGTTCTAGTCACAAAATCAATGGTGTTGAC
TTCATTAAAAAAGAACGAACTAATCAA Run BLAST on NCBI protein sequence of TCONS_00039327-protein >TCONS_00039327-protein ID=TCONS_00039327-protein|Name=TCONS_00039327-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
MTKINFFNIFFLTVKGGICTDLVIFPLYTFPTRAPNDQTLNMIFQSSSQT
LLGEGCASILTSVYTQQTKWFVKGFTKDVITTDLKGSCTINSGGSSTAAA
MVSAIVALALSVNQQLTWRDVQYLIIKSSNQNNLPVTWYTNGVGLRFNSR
YGFGILDAGKMVTLSKTWKTTGVNMVSQKVLVTKSMVLTSLKKNELI Run BLAST on NCBI transcript from alignment at sc0002074:28552..30699- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00039327 ID=TCONS_00039327|Name=TCONS_00039327|organism=Clytia hemisphaerica|type=transcript|length=2148bp|location=Sequence derived from alignment at sc0002074:28552..30699- (Clytia hemisphaerica)
TTTTAAACGACACACTTGATACAACCTGGCTATCATTAGCCTTTTTCATA
GGATTCATTTTTTAGTGTATGAAATTTTTCTACGTCACTGCAGTGAATCG
AATAAATGGTTTTTGAATTCCCAAGCCATAAATTATGACAAAAATCAATT
TTTTTAACATTTTTTTCCTTACTGTAAAGGGGGGAATCTGCACAGATTTG
GTAATCTTTCCCCTGTACACTTTTCCTACGAGGGCACCGAACGATCAAAC
TTTGAATATGATTTTTCAATCTTCCAGTCAAACTCTATTAGGAGAAGGTT
GCGCGTCTATCTTGACTTCAGTATACACACAACAAACAAAATGGTTTGTC
AAAGGATTCACCAAAGATGTTGTAAGTCTCTCTACCCATTCCTAAAACTG
ACTTAAAAAACTTAAGCTTACAAGTAAACCATAATATTTAAATTTTGTCC
GATCCAGCAAAGTAAAGGTGTTCCCTATGGGGGAATAAGACGAACAGTCA
TGGGGTTCTAAATCCAAAAATAAAACAAAACTCTTTGCAAATATCTGAAA
ATAGGGGTTCAGCTTATCCTTCCAAAAAAAAAAGAAGAATGAAAGTAATG
GGATTTCATAGCCCTGTTGAATTGAGAAAGATCCTCAATCGTATTATAGT
CTAGCTCGGGGGAAAATCCCCCAGAACCCCTGTAAGGATATTATTAAATC
GACAATATTTTCAAAAATCATAAAAGGATCGCGGTTTTTCCCAAATTTAT
TGAGAAATCCCAAAGAGAAAATGTGGGAGATCAAAAATGCAAGAATCAGC
AGATTCCTAAAAACTAAATCATTTAGGCCTCCCTCCCTTCTAGTTTTCCT
TAAAGACTACCTCCATCAATAGCGAGTTTATGTATTTATTTGCACCCTTT
GAGGACGGTGGAGTGATAAAAGCCATTTGAAAAAAACCCGCTGTTTTGAC
CAGAAAAACTCGAGGACGGTAAAAGGCGCTAATTTACCATATTTATCAGT
CAATCGGGATCTAGACAAATTAGAACCTTACCGTCTCCGTTACAGAAAAA
CACAGATACATAAACTAACCAACTATCACCAAAATACAGATTCTTATTAC
CTTTACACTTTAGATCACCACTGATTTAAAAGGTTCATGTACCATCAATT
CCGGTGGCTCATCAACTGCAGCAGCCATGGTTTCTGCTATTGTTGCTCTT
GCTCTCAGTGTTAAGTAGGTATCATGCTCTTCTTCATATATAGCCTGAAA
AACGAGTGAGAAACAGATTTACCATTATTTTTTCTTCTAATTATCGCGGC
ATTTCCCTTTTATCTTAAATATCTCTTCATTGATATCTATTAGTTATCGC
ATAGTGCCGAAAGGTGTTTGATAATTCCAGCCATGGCGTACTAAATTTAT
AACATGGTTCCAGCCAAAAAATATGGGTAGCTTATATAGATAAAATGTGT
ACTTGACGGATGACAACAAGTCAAAACATATCTTTCAGTCAGCAATTGAC
TTGGCGTGACGTTCAATACCTGATCATCAAATCATCCAATCAGAACAATC
TTCCTGTCACGTGGTACACCAATGGTGTTGGTCTTCGCTTCAACTCGCGT
TACGGTTTCGGGATTCTCGATGCCGGAAAAATGGTCACCCTTTCTAAAAC
TTGGAAAACAACAGGCGTTAATATGGTTTCACAAAAGGTTCTAGTCACAA
AATCAATGNGGAAAACAACAGGCGTTATTATGGTTTCACAAAAGGTTCTA
GTCACAAAATCAATGTAAGTATTTTTCGTCAATATCAAATTTAGTTGTGC
TTTGTATAAAAATTTTGAATGTATTGTTTTAAGGACAATTTTCTGAGACA
TTAAATTATTTTTTTATGAATAGAAAGTAGTCTTAATAACATCCGCTGTT
CTACACAATTTTTTGCATTTGAATATGGTTACTTTATGCAAGGGGATCTT
ACATTTTTCACAAGAGCTCTCCAACCTACAATACCGTCGTCGAAAAGCAT
TTTCCTGTTTGTTGTTGTTGTCAGTCTTCTTTAAAAGACGACCGCACCGC
TAAGGGTTGATATGTGTATTGACATTGATTACTTACACGTCATTATCTTT
TCATTGTTTTAGGGTGTTGACTTCATTAAAAAAGAACGAACTAATCAA Coding sequence (CDS) from alignment at sc0002074:28552..30699- >TCONS_00039327 ID=TCONS_00039327|Name=TCONS_00039327|organism=Clytia hemisphaerica|type=CDS|length=2364bp|location=Sequence derived from alignment at sc0002074:28552..30699- (Clytia hemisphaerica)
GGTGTTGACTTCATTAAAAAAGAACGAACTAATCTCAGCAATTGACTTGG
CGTGACGTTCAATACCTGATCATCAAATCATCCAATCAGAACAATCTTCC
TGTCACGTGGTACACCAATGGTGTTGGTCTTCGCTTCAACTCGCGTTACG
GTTTCGGGATTCTCGATGCCGGAAAAATGGTCACCCTTTCTAAAACTTGG
AAAACAACAGGCGTTAATATGGTTTCACAAAAGGTTCTAGTCACAAAATC
AATATCACCACTGATTTAAAAGGTTCATGTACCATCAATTCCGGTGGCTC
ATCAACTGCAGCAGCCATGGTTTCTGCTATTGTTGCTCTTGCTCTCAGTG
TTAAATGACAAAAATCAATTTTTTTAACATTTTTTTCCTTACTGTAAAGG
GGGGAATCTGCACAGATTTGGTAATCTTTCCCCTGTACACTTTTCCTACG
AGGGCACCGAACGATCAAACTTTGAATATGATTTTTCAATCTTCCAGTCA
AACTCTATTAGGAGAAGGTTGCGCGTCTATCTTGACTTCAGTATACACAC
AACAAACAAAATGGTTTGTCAAAGGATTCACCAAAGATGTTGGTGTTGAC
TTCATTAAAAAAGAACGAACTAATCTCAGCAATTGACTTGGCGTGACGTT
CAATACCTGATCATCAAATCATCCAATCAGAACAATCTTCCTGTCACGTG
GTACACCAATGGTGTTGGTCTTCGCTTCAACTCGCGTTACGGTTTCGGGA
TTCTCGATGCCGGAAAAATGGTCACCCTTTCTAAAACTTGGAAAACAACA
GGCGTTAATATGGTTTCACAAAAGGTTCTAGTCACAAAATCAATATCACC
ACTGATTTAAAAGGTTCATGTACCATCAATTCCGGTGGCTCATCAACTGC
AGCAGCCATGGTTTCTGCTATTGTTGCTCTTGCTCTCAGTGTTAAATGAC
AAAAATCAATTTTTTTAACATTTTTTTCCTTACTGTAAAGGGGGGAATCT
GCACAGATTTGGTAATCTTTCCCCTGTACACTTTTCCTACGAGGGCACCG
AACGATCAAACTTTGAATATGATTTTTCAATCTTCCAGTCAAACTCTATT
AGGAGAAGGTTGCGCGTCTATCTTGACTTCAGTATACACACAACAAACAA
AATGGTTTGTCAAAGGATTCACCAAAGATGTTGGTGTTGACTTCATTAAA
AAAGAACGAACTAATCTCAGCAATTGACTTGGCGTGACGTTCAATACCTG
ATCATCAAATCATCCAATCAGAACAATCTTCCTGTCACGTGGTACACCAA
TGGTGTTGGTCTTCGCTTCAACTCGCGTTACGGTTTCGGGATTCTCGATG
CCGGAAAAATGGTCACCCTTTCTAAAACTTGGAAAACAACAGGCGTTAAT
ATGGTTTCACAAAAGGTTCTAGTCACAAAATCAATATCACCACTGATTTA
AAAGGTTCATGTACCATCAATTCCGGTGGCTCATCAACTGCAGCAGCCAT
GGTTTCTGCTATTGTTGCTCTTGCTCTCAGTGTTAAATGACAAAAATCAA
TTTTTTTAACATTTTTTTCCTTACTGTAAAGGGGGGAATCTGCACAGATT
TGGTAATCTTTCCCCTGTACACTTTTCCTACGAGGGCACCGAACGATCAA
ACTTTGAATATGATTTTTCAATCTTCCAGTCAAACTCTATTAGGAGAAGG
TTGCGCGTCTATCTTGACTTCAGTATACACACAACAAACAAAATGGTTTG
TCAAAGGATTCACCAAAGATGTTGGTGTTGACTTCATTAAAAAAGAACGA
ACTAATCTCAGCAATTGACTTGGCGTGACGTTCAATACCTGATCATCAAA
TCATCCAATCAGAACAATCTTCCTGTCACGTGGTACACCAATGGTGTTGG
TCTTCGCTTCAACTCGCGTTACGGTTTCGGGATTCTCGATGCCGGAAAAA
TGGTCACCCTTTCTAAAACTTGGAAAACAACAGGCGTTAATATGGTTTCA
CAAAAGGTTCTAGTCACAAAATCAATATCACCACTGATTTAAAAGGTTCA
TGTACCATCAATTCCGGTGGCTCATCAACTGCAGCAGCCATGGTTTCTGC
TATTGTTGCTCTTGCTCTCAGTGTTAAATGACAAAAATCAATTTTTTTAA
CATTTTTTTCCTTACTGTAAAGGGGGGAATCTGCACAGATTTGGTAATCT
TTCCCCTGTACACTTTTCCTACGAGGGCACCGAACGATCAAACTTTGAAT
ATGATTTTTCAATCTTCCAGTCAAACTCTATTAGGAGAAGGTTGCGCGTC
TATCTTGACTTCAGTATACACACAACAAACAAAATGGTTTGTCAAAGGAT
TCACCAAAGATGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00039327-exon-sc0002074-1575043694:30329..30699 | TCONS_00039327-exon-sc0002074-1575043694:30329..30699 | Clytia hemisphaerica | exon |
| TCONS_00039327-exon-sc0002074-1575043694:29486..29586 | TCONS_00039327-exon-sc0002074-1575043694:29486..29586 | Clytia hemisphaerica | exon |
| TCONS_00039327-exon-sc0002074-1575043694:28993..29211 | TCONS_00039327-exon-sc0002074-1575043694:28993..29211 | Clytia hemisphaerica | exon |
| TCONS_00039327-exon-sc0002074-1575043694:28552..28587 | TCONS_00039327-exon-sc0002074-1575043694:28552..28587 | Clytia hemisphaerica | exon |
| TCONS_00039327-exon-sc0002074-1510915933:30329..30699 | TCONS_00039327-exon-sc0002074-1510915933:30329..30699 | Clytia hemisphaerica | exon |
| TCONS_00039327-exon-sc0002074-1510915933:29486..29586 | TCONS_00039327-exon-sc0002074-1510915933:29486..29586 | Clytia hemisphaerica | exon |
| TCONS_00039327-exon-sc0002074-1510915933:28993..29211 | TCONS_00039327-exon-sc0002074-1510915933:28993..29211 | Clytia hemisphaerica | exon |
| TCONS_00039327-exon-sc0002074-1510915933:28552..28587 | TCONS_00039327-exon-sc0002074-1510915933:28552..28587 | Clytia hemisphaerica | exon |
| TCONS_00039327-exon-sc0002074-1491911889:30329..30699 | TCONS_00039327-exon-sc0002074-1491911889:30329..30699 | Clytia hemisphaerica | exon |
| TCONS_00039327-exon-sc0002074-1491911889:29486..29586 | TCONS_00039327-exon-sc0002074-1491911889:29486..29586 | Clytia hemisphaerica | exon |
| TCONS_00039327-exon-sc0002074-1491911889:28993..29211 | TCONS_00039327-exon-sc0002074-1491911889:28993..29211 | Clytia hemisphaerica | exon |
| TCONS_00039327-exon-sc0002074-1491911889:28552..28587 | TCONS_00039327-exon-sc0002074-1491911889:28552..28587 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002074 | supercontig | sc0002074:28552..30699 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000209 | Peptidase_S8/S53_dom |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004252 | serine-type endopeptidase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004252 |
serine-type endopeptidase activity |
Blast
BLAST of TCONS_00039327 vs. Swiss-Prot (Human)
Match: NEC2 (Neuroendocrine convertase 2 OS=Homo sapiens GN=PCSK2 PE=2 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 1.279e-19 Identity = 61/162 (37.65%), Postives = 85/162 (52.47%), Query Frame = 3
Query: 249 TLNMIFQSSSQTLLGEGCASILTSVYTQQTKWFVKGFTKDVITTDLKGSCTINSGGXXXXXXXXXXXXXXXXXXNQQLTWRDVQYLIIKSSNQNNLP---VTWYTNGVGLRFNSRYGFGILDAGKMVTLSKTWKTT--------GVNMVSQKVLVTKSMVLT 701
++N L E C+S L S ++ K + V TTDL G+CT+ G+S AA + + ALAL N LTWRD+Q+L + +S +N L W NGVGL FN +G+G+LDAG MV ++K WKT G +K+ T +VLT
Sbjct: 330 SINSAINDGRTALYDESCSSTLASTFSNGRK---RNPEAGVATTDLYGNCTLRHSGTSAAAPEAAGVFALALEANLGLTWRDMQHLTVLTSKRNQLHDEVHQWRRNGVGLEFNHLFGYGVLDAGAMVKMAKDWKTVPERFHCVGGSVQDPEKIPSTGKLVLT 488
The following BLAST results are available for this feature:
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