TCONS_00039209 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039209
Unique NameTCONS_00039209
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3219

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039209 ID=TCONS_00039209|Name=TCONS_00039209|organism=Clytia hemisphaerica|type=transcript|length=3219bp
gaaaaatgaaaaaacaaattctaaaaacctaatatatttttcatattttt
caaaatctgtaaCCATCAATTTTCTGATTCTCAAGCCAccccaaaaatct
aagattTCGGAGATGACAAAAGAACAGAAATAATTACCAGTCTGGAAAGG
AGGGCCTATACGCCGGATATATCCGGCGTAGACTTTATCTTAGGATCGGC
GTATTGGCGTGAGCTCAATAATTTTAACCTTCCTTGGCGTATCAAATCTG
TGAATTTCGGCGTAGGAATCGATTTTTTGTCCAGTATATCTTCGCCGCTC
TTCTTCTCCTTTCAGATTGTTTACACTACCTTGTTCTTTTTAAAATCCGT
TTAAAGCTCTTCATCACGTGACTTTCTACACCTAGACTCCATTTCCACTA
CATTGTAATAAAATGTAAAACGGGCGTAAAAAAAAAACGCACCCTCTATT
GAAAAACTCGATATCGGTACCAAAATAAACCTCACATTTTTTTCGGGGAA
TCCAATATGGCGGATGCACGAGACAACGAATTAGAGataattgaagatga
aaatgaagttgTAAATAGTGTAAATAATGGTGTAAAAAGTGTAAATttaa
tttgtaaagtttgtaatAATCCATGTGGCGTGGCTCACAGTTGCCTGAGA
TGTGAACGGTACACTCACTTAATTTGTGGGGACCCACCAGCTGGggaaga
acaagaagaaggataGGGTCAAAAGGTTATTTGTTTTTTATGCAGTGGGA
AAAGGAAGGACGAGGGTAAGTcggtttgaaaatttcaaattaagttAGGA
GTAGACACAGAATTATGAATTCTATGGACGATATTATCGTTAAATCGTAA
CTTTATCTCTGACGAATAAAAAGTGTGGATTTGTGCTTTGGTGGGCTTTA
CAAACTGGGTCCTTTTCAGGATAGATTTACTTGTCTTGATAGCTTAGTGC
AGAAGAGCTGGTAGTCTCTATCGAGATGCTCGTTAAAATTGCACACATTC
ATTGAATCCGCTACCAATTCAGTGAAGAGCTATTGAGGCGTAATCTATAA
TCAGTCTTTGGGCCAcactttttatgtatttttaaatacataTTTCTCAT
AAAGCTTAAATCTGGCAAATTTCTGCACTTACATgcttttcaattaaaaa
tgtattttcaataatttggGTTGGGGCCCCATATTACACACATCAATAAT
AAGCTACGAGAATATTTTTTTGGCTTATCACTTTGCTACTTACTACAGTA
CACagtaacttttttaataaaataaaaaaaagaagacaataataaaaata
agactCTGACAACGCACGTGGTACTTTTCATGTTTGAAAGATCAAATGGA
TCAAATTAAatgaacatttttttcttttacatagTGAAATGTAAAAGGTT
TTCCTCTCTTTCTATTATTTGGTTTATTGGAGAGgcgttcttcattattt
taAGAGTACATACACGAAATACAAATATAAATAATAAGTTGCGATTATTT
TAGCTTTACTATCGCAGTTGATTATTGATAGGTGTAACGGGGATTTTAAT
AAGAAAGATAAAAATGTCACAGATAAACTCATGTGTAACCTCGCTAATGT
GTACTCTCTCGCTCATGTTTGTAGGCAATTCCTCTGAAACGTCCGCttca
aaaaaacgaaaacacTCGCAAGAGGCGTGGAAGGCAAGGTTTAAAAGACC
TAAAATCGGAGAGACAAACACAAACACTGATAAGAAAACTGACtctcaaa
acaattcaaagaagaCAGCCATCGAGGAAAAATCATTTACGTGTAAAGAG
TGCCTTGAAGGGTTTTTTACCAAAAAGAATCCTGCAAAAGTAGGGTCAAC
TAGAATCTGTAGAAATGATTCATCAAGTATACAACGACACAAATCCACAT
GGCATAAATTAACAGGCAAATGTACGATTGTCCCTACTAACTCAGTGGAC
ATAGCTAATCTAAAGAAGAAATATGAACGAAAAAAGGACGATAGTGGTAG
TGACAATGAAGCAACTGAAAGCCCAAACCAAGCCTCCGACCAAGCCTCTA
CTACTGCTACTTCAGTTCATGAAAGTTCTATAGCCAAGAAACCTACACAA
ACCACAATGTTGAGTGTTGCATCAAATAATCTTGAAAAAGACTCTTCAAC
ACCAAAGGACGAAGATCTCatattaaaaaaactgaatGAGTTGACTTTAG
AACTCAGGGGTATGAAAACTCAACATGAAAGCATATGCAGTATTGCATTT
AAAGATACAGAGAAAAGTGTCCTACTGGAGGCTTTACGAAAGTGTGAAAA
CCTAGTTGACTTTCTGAAAgtttccaaaagttttgaatggTTTTGTGACG
AAAAAACAGAAGAAGGGATTTTGAGGTGTAAAGCCTGTTTTCACATGTAT
CTTAAAAACAATCCTAGATCATCTAGTTTGAACCCAACACAAGTCCGTAT
GGTTACAAAGGGAAATGAATTCTCCACAGGAATGTCATATGACAAATTGA
AAACACGGCAGTTACTACAAGGAGGTAATGACACCTGGAGACATTTAAAA
AACCTCATGATCAATCATCTTTGCCTAATTGGAGAAGGATCAAACTTTCA
CTTCGAGAAGATGAAAATACAAGACGAAATGTTTTTCGTGCAGCAATTTC
GGCCATTAAATTAGGGTCTGCTGCCACCCATTTTGAAACTTTGATATCGT
TGTTGAAGAGTTGGAAACATAGGGCATAGCAGGAAAAACTTTAATGACAT
CTTGCATTGTATCGAACAGGCTATGAATAAGCAAATTAACGACTGGCTAA
GCACACCCCTACCATCAACTGGTCTACCACCACATTTCTGGGGAACTGTT
GATAAAGCTACACCTTCAAGAGTCACAAACCAAGCCGTCATCATAGTTGC
ACGGGATCAAAATGGAAATTGTTGTCCTATCCCAGTAGCGGCGCCCGAAA
TCTACAGAGAGCTTGATGCAGCAACCTATGATGAACTTGCAACCCAGATG
GTTGATGctataaaagaaaactttccaTCCAGCTTGCTTTCAAGGATGTG
TGGTGCAGCAGCCGACGACCCTTACCAAACTAAAAACTTTCGCTCATCTT
TGGTTGAACATGTTGGGacagattttgatgatattctTAGCTTCCCTGTA
ACATGGGACCCTGGACATTTGCTCAATCTAGCAGTTACTGATGTTAGAGA
CAATGATACGATTGGAGGC
Run BLAST on NCBI

transcript from alignment at sc0002043:23869..27341+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039209 ID=TCONS_00039209|Name=TCONS_00039209|organism=Clytia hemisphaerica|type=transcript|length=3473bp|location=Sequence derived from alignment at sc0002043:23869..27341+ (Clytia hemisphaerica)
gaaaaatgaaaaaacaaattctaaaaacctaatatatttttcatattttt
caaaatctgtaaCCATCAATTTTCTGATTCTCAAGCCAccccaaaaatct
aagattTCGGAGATGACAAAAGAACAGAAATAATTACCAGTCTGGAAAGG
AGGGCCTATACGCCGGATATATCCGGCGTAGACTTTATCTTAGGATCGGC
GTATTGGCGTGAGCTCAATAATTTTAACCTTCCTTGGCGTATCAAATCTG
TGAATTTCGGCGTAGGAATCGATTTTTTGTCCAGTATATCTTCGCCGCTC
TTCTTCTCCTTTCAGATTGTTTACACTACCTTGTTCTTTTTAAAATCCGT
TTAAAGCTCTTCATCACGTGACTTTCTACACCTAGACTCCATTTCCACTA
CATTGTAATAAAATGTAAAACGGGCGTAAAAAAAAAACGCACCCTCTATT
GAAAAACTCGATATCGGTACCAAAATAAACCTCACATTTTTTTCGGGGAA
TCCAATATGGCGGATGCACGAGACAACGAATTAGAGataattgaagatga
aaatgaagttgTAAATAGTGTAAATAATGGTGTAAAAAGTGTAAATttaa
tttgtaaagtttgtaatAATCCATGTGGCGTGGCTCACAGTTGCCTGAGA
TGTGAACGGTACACTCACTTAATTTGTGGGGACCCACCAGCTGGggaaga
acaagaagaaggataGGGTCAAAAGGTTATTTGTTTTTTATGCAGTGGGA
AAAGGAAGGACGAGGGTAAGTcggtttgaaaatttcaaattaagttAGGA
GTAGACACAGAATTATGAATTCTATGGACGATATTATCGTTAAATCGTAA
CTTTATCTCTGACGAATAAAAAGTGTGGATTTGTGCTTTGGTGGGCTTTA
CAAACTGGGTCCTTTTCAGGATAGATTTACTTGTCTTGATAGCTTAGTGC
AGAAGAGCTGGTAGTCTCTATCGAGATGCTCGTTAAAATTGCACACATTC
ATTGAATCCGCTACCAATTCAGTGAAGAGCTATTGAGGCGTAATCTATAA
TCAGTCTTTGGGCCAcactttttatgtatttttaaatacataTTTCTCAT
AAAGCTTAAATCTGGCAAATTTCTGCACTTACATgcttttcaattaaaaa
tgtattttcaataatttggGTTGGGGCCCCATATTACACACATCAATAAT
AAGCTACGAGAATATTTTTTTGGCTTATCACTTTGCTACTTACTACAGTA
CACagtaacttttttaataaaataaaaaaaagaagacaataataaaaata
agactCTGACAACGCACGTGGTACTTTTCATGTTTGAAAGATCAAATGGA
TCAAATTAAatgaacatttttttcttttacatagTGAAATGTAAAAGGTT
TTCCTCTCTTTCTATTATTTGGTTTATTGGAGAGgcgttcttcattattt
taAGAGTACATACACGAAATACAAATATAAATAATAAGTTGCGATTATTT
TAGCTTTACTATCGCAGTTGATTATTGATAGGTGTAACGGGGATTTTAAT
AAGAAAGATAAAAATGTCACAGATAAACTCATGTGTAACCTCGCTAATGT
GTACTCTCTCGCTCATGTTTGTAGGCAATTCCTCTGAAACGTCCGCttca
aaaaaacgaaaacacTCGCAAGAGGCGTGGAAGGCAAGGTTTAAAAGACC
TAAAATCGGAGAGACAAACACAAACACTGATAAGAAAACTGACtctcaaa
acaattcaaagaagaCAGCCATCGAGGAAAAATCATTTACGTGTAAAGAG
TGCCTTGAAGGGTTTTTTACCAAAAAGAATCCTGCAAAAGTAGGGTCAAC
TAGAATCTGTAGAAATGATTCATCAAGTATACAACGACACAAATCCACAT
GGCATAAATTAACAGGCAAATGTACGATTGTCCCTACTAACTCAGTGGAC
ATAGCTAATCTAAAGAAGAAATATGAACGAAAAAAGGACGATAGTGGTAG
TGACAATGAAGCAACTGAAAGCCCAAACCAAGCCTCCGACCAAGCCTCTA
CTACTGCTACTTCAGTTCATGAAAGTTCTATAGCCAAGAAACCTACACAA
ACCACAATGTTGAGTGTTGCATCAAATAATCTTGAAAAAGACTCTTCAAC
ACCAAAGGACGAAGATCTCatattaaaaaaactgaatGAGTTGACTTTAG
AACTCAGGGGTATGAAAACTCAACATGAAAGCATATGCAGTATTGCATTT
AAAGATACAGAGAAAAGTGTCCTACTGGAGGCTTTACGAAAGTGTGAAAA
CCTAGTTGACTTTCTGAAAgtttccaaaagttttgaatggTTTTGTGACG
AAAAAACAGAAGAAGGGATTTTGAGGTGTAAAGCCTGTTTTCACATGTAT
CTTAAAAACAATCCTAGATCATCTAGTTTGAACCCAACACAAGTCCGTAT
GGTTACAAAGGGAAATGAATTCTCCACAGGAATGTCATATGACAAATTGA
AAACACGGCAGTTACTACAAGGAGGTAATGACACCTGGAGACATTTAAAA
AACCTCATGATCAATCATCTTTGCCTAATTGGAGAAGGATCAAACTTTCA
CTTCGAGAAGATGAAAATACAAGACGAAATGTTTTTCGTGCAGCAATTTC
GGCCATTAAATTAGGGTCTGCTGCCACCCATTTTGAAACTTTGATATCGT
TGTTGAAGAGTTGGAAACATAGGGCATAGCAGGAAAAACTTTAATGACAT
CTTGCATTGTATCGAACAGGCTATGAATAAGCAAATTAACGACTGGCTAA
GCACACCCCTACCATCAACTGGTCTACCACCACATTTCTGGGGAACTGTT
GATAAAGCTACACCTTCAAGAGTCACAAACCAAGCCGTCATCATAGTTGC
ACGGGATCAAAATGGAAATTGTTGTCCTATCCCAGTAGCGGCGCCCGAAA
TCTACAGAGAGCTTGATGCAGCAACCTATGATGAACTTGCAACCCAGATG
GTTGATGctataaaagaaaactttccaTCCAGCTTGCTTTCAAGGTATCC
CAGGACAATACAATGATAAATTGTATTTTCCTGGCATATGGTGATTTAAA
AGTAGCTTCTGAAAACTTCTGATATGTTAATCTTCCCCAATATTAAGACA
TTGTAACTGCCTTGTCATCACTTCTGCTAACGCAATCAGTAGTAAGAAAT
CACTATCCGAAAATTTAATTGATCTAAAATTAGAACTGATTGTGGACTTA
TAGACAGTCGATCTCCTTCAGTGtattgttttttcttatttgtgTCAGGA
TGTGTGGTGCAGCAGCCGACGACCCTTACCAAACTAAAAACTTTCGCTCA
TCTTTGGTTGAACATGTTGGGacagattttgatgatattctTAGCTTCCC
TGTAACATGGGACCCTGGACATTTGCTCAATCTAGCAGTTACTGATGTTA
GAGACAATGATACGATTGGAGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023623XLOC_023623Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039209-exon-sc0002043-1491911889:23869..26912TCONS_00039209-exon-sc0002043-1491911889:23869..26912Clytia hemisphaericaexon
TCONS_00039209-exon-sc0002043-1510915933:23869..26912TCONS_00039209-exon-sc0002043-1510915933:23869..26912Clytia hemisphaericaexon
TCONS_00039209-exon-sc0002043-1575043694:23869..26912TCONS_00039209-exon-sc0002043-1575043694:23869..26912Clytia hemisphaericaexon
TCONS_00039209-exon-sc0002043-1491911889:27167..27341TCONS_00039209-exon-sc0002043-1491911889:27167..27341Clytia hemisphaericaexon
TCONS_00039209-exon-sc0002043-1510915933:27167..27341TCONS_00039209-exon-sc0002043-1510915933:27167..27341Clytia hemisphaericaexon
TCONS_00039209-exon-sc0002043-1575043694:27167..27341TCONS_00039209-exon-sc0002043-1575043694:27167..27341Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002043supercontigsc0002043:23869..27341 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0998343	0	0.0390266	0	0.0251208	0	0.0848096	0.0593772	0.0859236	0.0503887	0.0469275	0.0574808	0.141929	0.466956	0.464409	0.276564	0.42539	0	0.0357086	0	0.0205744	0.085507	0.0275873	0.0378261	0.0720482	0.0843675	0.0247028	0.0654112	0.119522
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00039209 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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