TCONS_00039089 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039089
Unique NameTCONS_00039089
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length829

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039089 ID=TCONS_00039089|Name=TCONS_00039089|organism=Clytia hemisphaerica|type=transcript|length=829bp
CGAGCTTAACCTGGAAGTCGATAAACAGTTGTGTTTATCCCCTTTTTTTC
AGCAAACGAAAAGTCAAACCTTAATCATGAGTGTCTTCATACAACAGAAA
TGGAAAGATGAGACATTAACATGGAAAAAGGAAGATTATGGTGGACACAT
CAAGAGCATAAATGTCGATCCTTCGCGAGTGTGGAAACCTGATATTGTTT
TGTACAGCAATGCTGACGAAGACAAAACATTCGGTGGAAATTTAGATCGT
TTAAACACAAGAGTTCGTTTATTTTACGATGGTAATATCACGTGGCTTGC
ACCGATCATTCTTCGATCGCAATGCAGTATCGACGTCACTTATTTCCCCT
TCGATACGCAAAATTGTACTTTGAAATTTGGCAGTTGGACATATGAACGA
GCAAGATTGAACCTCAGAGATGGAGGGATCAAAATGGCGCAAACTAAGGA
GTACGAGGCAAATTCCGAATGGAAATTGATTTCCACTTACAACATGCGCC
ATGACATTGAATATCCATGCTGTAAGGATGAATTTTACCCTGACATCACC
TTCCATATCGTCATTGCAAGAAGATCTTTGTTTTATTTGTGCAATTTGAT
TTTCCCCATGACCGTCATTGGAATGCTGACCATGCTCTCCTTTCTGTTAC
CTGCAGAATCGGGTGAACGAATTTCATTAGCTATCACGTTGCTATTGGCA
ATGACAGTTTTCATGTTGGTCGTCGCAGATATCATTCCGGCCACCAGTGA
CGTCATTCCTTTGGTTGGGATTTTCTTCAGTGCTTCGATGATTGAGATGG
TGATCATGATCGTTGTGTTGTGTTATATT
Run BLAST on NCBI

protein sequence of TCONS_00039089-protein

>TCONS_00039089-protein ID=TCONS_00039089-protein|Name=TCONS_00039089-protein|organism=Clytia hemisphaerica|type=polypeptide|length=276bp
ELNLEVDKQLCLSPFFQQTKSQTLIMSVFIQQKWKDETLTWKKEDYGGHI
KSINVDPSRVWKPDIVLYSNADEDKTFGGNLDRLNTRVRLFYDGNITWLA
PIILRSQCSIDVTYFPFDTQNCTLKFGSWTYERARLNLRDGGIKMAQTKE
YEANSEWKLISTYNMRHDIEYPCCKDEFYPDITFHIVIARRSLFYLCNLI
FPMTVIGMLTMLSFLLPAESGERISLAITLLLAMTVFMLVVADIIPATSD
VIPLVGIFFSASMIEMVIMIVVLCYI
Run BLAST on NCBI

transcript from alignment at sc0002010:26656..32713+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039089 ID=TCONS_00039089|Name=TCONS_00039089|organism=Clytia hemisphaerica|type=transcript|length=6058bp|location=Sequence derived from alignment at sc0002010:26656..32713+ (Clytia hemisphaerica)
CGAGCTTAACCTGGAAGTCGATAAACAGTTGTGTTTATCCCCTTTTTTTC
AGCAAACGAAAAGTCAAACCTTAATCATGAGTGTCTTCATACAACAGGTA
AAGAATTATTAAACAACATGGACTCTGTAGTGGACGACTTGACTTTTTCC
CTGCTCTTCTCGAGTGAGTTAGGGCAAGCTCCTAGATCTTTAGTAAAAAG
GATTTGGGCCAGTAATCTATTGCAGCCGGTGATCAgcaactttttagaaa
tatgtgttcttatcttctagcccagctggcacacaacgttgtttcaacgt
ttatctatcgttcacaacgtccatgtaacgttagatgaacattgaaacaa
cgttgtgtgccagctgggagaaGACAACATGTTAAAACCTTCAAGTTTTT
TAaatgatctgttctgatttcTATAGATTTATTATTGCTTTATGGTTGGA
TGTGTTCTGAATTCTAGGAAAGACTTTGTGGCAAGATATACTTGTtggat
atttgttttttttttccttaaaatgtgttctgaagctttctagggttacc
tagacaacaagaacacattATACGACCTTGAGTAAAACCCTATCTCGTCA
GAACACTTCTAGTTGATGGATTCACGAAACCCCAATCAgcacagatcaat
atttctagctgaaacatactctcagaacacatcggaaaaaaggcTGCTTT
CGAACCTACTGATTTCCTTGAGAATAATCCCGTCAAAGTAGTTTGAATAT
TTTGTAAACATGGAGGAAGGTTTGACATCTTGTTCCTGATTTACGATGAG
TCAATGAGTCAACAAGTGTccatgatctaagattgaaaagaaagacGGAA
AGGTCTAGATTCCAATTGTACTAACCCACATTGTAATAATCGAATTAGCA
CATTTTGCACAGAACTGCCGCACTATGCAATACAAAAGGCTGACACACAT
TGTAACAACACCCGAAGCACTTTATAAAATAGGCCTAAAAAGGGTAAACT
GAGTTTGGCGTTTATTACTAAGTGTGTTAGTACAAAGAACCGAGATAAAA
ACATTACAATTATAGAAATGGAAAGATGAGACATTAACATGGAAAAAGGA
AGATTATGGTGGACACATCAAGAGCATAAATGTCGATCCTTCGCGAGTGT
GGAAACCTGATATTGTTTTGTACAGCAAGTAAGTTTGAAAGGCTCCATGG
CCTTACCAACATTGTTCCAGGATATTCGCAATTTGGATaatgacatttaa
aaaaatcttttcttatTACTGATTTGTCGATATATAGTTAAGACCGACTT
TGCTTCAATCAGATAAGACATACAGctgctaaaaataaaaatagaNAATT
TGAATaatgacatttaaaaaaatcttttcttatTACTGATTTGTCGATAT
ATAGTTAAGACCGACTTTGCTTCAATCAGATAAGACACACAGctgctaaa
aataaaaatagaccaCCGATTTCGAATCTGATAATGATACTAGGTTAAGA
ATAGAAATTATATTAATttgctaaattaaaaaaaaaaatcttgctaAATT
CTCGTCAAATTTATAAATATCCTTGAATCGTCGAAATAAGAAAGACGCTA
AGTTGCACCAAAATTTTCGAGTGCTCAAGTCCTTTACAGACTATTAAAAT
AGTCgcttattcattcattcattctttcattCATTGCTTCCTATGCTTTG
CTTATAATAGTGCTGACGAAGACAAAACATTCGGTGGAAATTTAGATCGT
TTAAACACAAGAGTTCGTTTATTTTACGATGGTAATATCACGTGGCTTGC
ACCGATCATTCTTCGATCGCAATGCAGTATCGACGTCACTTATTTCCCCT
TCGATACGCAAAATTGTACTTTGAAATTTGGCAGTTGGACATATGAACGA
GCAAGATTGAACCTCAGAGATGGAGGGATCAAAATGGCGCAAAGTAAGCT
CATTTTAGAAGCCTTTGTGGAAGATTGTATACAAGATTTTAGCCATTACA
CTCATTTTCAGCTCAGTCAATCCCGATTTATTCAGTTTTTAAGAACACAA
GATCAACACATTTCGAAACTATAAATTATGGACCGAATTTAAGCCTagga
aaaatattcttataatgtCCTTAATATGGTTATTCTATGAGCACTTCAGT
ACTAAGCCATTTTTCAGATATAGGGCTGggatcactgacctttatatatc
cctgggccaagttactcaatgccggcctagcaaaatgttatgatcggagt
ttctttgaaattggtacccgcggagagagcgGTAGATCTAATTTCGCTGG
TACACTAACGATGTAGCTccgtttgtcgttaggcaaagtttcaaacacta
ccATGGCTTCTTCTCGagtaccaactttcaaaaaacttcgatcaataatg
gtggatatagcttagtccagggatgtataaaggtcagtggctgTGATCTT
AAAAATTTATCCGTTTATTTTGACCAGAAAATAGCTCCTTCTTCTTCAAA
AGAGGCGTGTAGAGCCACACGTAAAGGTGAAACATATATATGAACGAGCA
ATCTCTTTTTCTCCATTACAGCTAAGGAGTACGAGGCAAATTCCGAATGG
AAATTGATTTCCACTTACAACATGCGCCATGACATTGAATATCCATGCTG
TAAGGATGAATTTTACCCTGACATCACCTTCCATATCGTCATTGCAAGAA
GATCTTTGTTTTATTTGTGCAATTTGATTTTCCCCATGACCGTCATTGGA
ATGCTGACCATGCTCTCCTTTCTGTTACCTGCAGAATCGGGTAAGTgtaa
taaattgatttttttttacttttaactttttaactttttaagtcagtgtt
ttttacacttttggcaaaaacgtgaaaactaattttcgtcaaaaacggTT
TTTTAAGTCTAAAATCACGATTCTTGAGTATTTTGGGATGAAAGCTTCCA
ATAAGTTGCTAATTATCATTTCAAAtctgttgaaattttttcctcGAGCA
ATACTGGatgagatattccaaaaaattagattttgtgtttttctcatttg
aaattGTTATATACAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATTTATGATTAACTGCT
CCAAACTTTGAAAGATCGTTACTTTTAGTACAATAACGCTATATAGTTCA
TTTAAAAAGGAATGGAATCTTTAATCTTTTCTCTCTCCGATAGAACCACT
AAATCTGATAATGAACGAAAACTTGCTCTCTAAAATTTGGTTTCAAAAAA
GTGcccaaattttcacgtttttgccaaaagtgtaaaaaacactgacTTAA
CTTCACTCATTGCATTGTTCTTTGTTATTACAGATTTTGTCTCCTTATGT
AAATAAGTTCTGCGATTAAAATATACCTAGGTAGTGGAGGGCACAACTTC
TGCATGGGATTTTTTAACTTTACTTTTATCACTTTCTTTTAAATACTGAA
CATTGAACGAAAACGCATCGACTCATTCATGACCGAGCTGAAGGATGGAA
CCCCATCCTTATCCAAATCAACCAAATGTTCTACCTTTTTAGTAAatgta
gtttttattgaaaacgaGGCTATTGCcctattaaaaacattttacacCAT
GTATAAGTTTCAAAGCTAGCGTCTTAATGAATTTGACGTCTCTGCCAGGA
CTTATCACTAATTTGTTAGGATGTACACGTTTATTCttcataagaacatc
aaaagtttttgaagcctttcgatttctaaactttttgagttttaagccta
aaaacgttcttaacatgtccttactttcaccatttttgagtatttttatc
cattttcttaagaaatcggttGTTTTTgtgtccgcaaagccttaaaatgt
tcttatcttgcTTTTAATATCTTGGGCATTGAAGCCTTGTGTCTTAAATa
gttttaactcgtgttttaactcgagatattaacccttaaaaacagtgttt
ttcagccagaaacatctgttttgtccagtttttgcgcttttggaagctcg
atatctcgagttaggtactgaaatcacctatacttgcaatgattcttaat
tttttgagagtttttaaaaaatatgcAGCAGGTCTccattttctcaagct
aaaattctaatttttgaccctataaTTTTTGCATGAGACTGTCCGAaaaa
cacaccaaagtgtcagaaaaaaattggcacccaagttttgagccttaaat
gtttcttgcatgtttctaaaaattttgaaacaatcagcctatttttcatg
cagagaaaacatttgttttgattggaaggttcttaaaaaaccgaattaaa
aatgttattttctcattctcagcatcagcatgtttcttagtttttaggca
ttctgagcctcatgttttaTAAAAGTGTGTTTTTTCCGTAGGTGAACGAA
TTTCATTAGCTATCACGTTGCTATTGGCAATGACAGTTTTCATGTTGGTC
GTCGCAGATATCATTCCGGCCACCAGTGACGTCATTCCTTTGGTTGGGAT
TTTCTTCAGTGCTTCGATGATTGAGATGGTGATCATGATCGTTGTGTTGT
GTTATATT

Coding sequence (CDS) from alignment at sc0002010:26656..32713+

>TCONS_00039089 ID=TCONS_00039089|Name=TCONS_00039089|organism=Clytia hemisphaerica|type=CDS|length=4140bp|location=Sequence derived from alignment at sc0002010:26656..32713+ (Clytia hemisphaerica)
GAGCTTAACCTGGAAGTCGATAAACAGTTGTGTTTATCCCCTTTTTTTCA
GCAAACGAAAAGTCAAACCTTAATCATGAGTGTCTTCATACAACAGAAAT
GGAAAGATGAGACATTAACATGGAAAAAGGAAGATTATGGTGGACACATC
AAGAGCATAAATGTCGATCCTTCGCGAGTGTGGAAACCTGATATTGTTTT
GTACAGCAATGCTGACGAAGACAAAACATTCGGTGGAAATTTAGATCGTT
TAAACACAAGAGTTCGTTTATTTTACGATGGTAATATCACGTGGCTTGCA
CCGATCATTCTTCGATCGCAATGCAGTATCGACGTCACTTATTTCCCCTT
CGATACGCAAAATTGTACTTTGAAATTTGGCAGTTGGACATATGAACGAG
CAAGATTGAACCTCAGAGATGGAGGGATCAAAATGGCGCAAACTAAGGAG
TACGAGGCAAATTCCGAATGGAAATTGATTTCCACTTACAACATGCGCCA
TGACATTGAATATCCATGCTGTAAGGATGAATTTTACCCTGACATCACCT
TCCATATCGTCATTGCAAGAAGATCTTTGTTTTATTTGTGCAATTTGATT
TTCCCCATGACCGTCATTGGAATGCTGACCATGCTCTCCTTTCTGTTACC
TGCAGAATCGGGTGAACGAATTTCATTAGCTATCACGTTGCTATTGGCAA
TGACAGTTTTCATGTTGGTCGTCGCAGATATCATTCCGGCCACCAGTGAC
GTCATTCCTTTGGTTGGGATTTTCTTCAGTGCTTCGATGATTGAGATGGT
GATCATGATCGTTGTGTTGTGTTATATTGAGCTTAACCTGGAAGTCGATA
AACAGTTGTGTTTATCCCCTTTTTTTCAGCAAACGAAAAGTCAAACCTTA
ATCATGAGTGTCTTCATACAACAGAAATGGAAAGATGAGACATTAACATG
GAAAAAGGAAGATTATGGTGGACACATCAAGAGCATAAATGTCGATCCTT
CGCGAGTGTGGAAACCTGATATTGTTTTGTACAGCAATGCTGACGAAGAC
AAAACATTCGGTGGAAATTTAGATCGTTTAAACACAAGAGTTCGTTTATT
TTACGATGGTAATATCACGTGGCTTGCACCGATCATTCTTCGATCGCAAT
GCAGTATCGACGTCACTTATTTCCCCTTCGATACGCAAAATTGTACTTTG
AAATTTGGCAGTTGGACATATGAACGAGCAAGATTGAACCTCAGAGATGG
AGGGATCAAAATGGCGCAAACTAAGGAGTACGAGGCAAATTCCGAATGGA
AATTGATTTCCACTTACAACATGCGCCATGACATTGAATATCCATGCTGT
AAGGATGAATTTTACCCTGACATCACCTTCCATATCGTCATTGCAAGAAG
ATCTTTGTTTTATTTGTGCAATTTGATTTTCCCCATGACCGTCATTGGAA
TGCTGACCATGCTCTCCTTTCTGTTACCTGCAGAATCGGGTGAACGAATT
TCATTAGCTATCACGTTGCTATTGGCAATGACAGTTTTCATGTTGGTCGT
CGCAGATATCATTCCGGCCACCAGTGACGTCATTCCTTTGGTTGGGATTT
TCTTCAGTGCTTCGATGATTGAGATGGTGATCATGATCGTTGTGTTGTGT
TATATTGAGCTTAACCTGGAAGTCGATAAACAGTTGTGTTTATCCCCTTT
TTTTCAGCAAACGAAAAGTCAAACCTTAATCATGAGTGTCTTCATACAAC
AGAAATGGAAAGATGAGACATTAACATGGAAAAAGGAAGATTATGGTGGA
CACATCAAGAGCATAAATGTCGATCCTTCGCGAGTGTGGAAACCTGATAT
TGTTTTGTACAGCAATGCTGACGAAGACAAAACATTCGGTGGAAATTTAG
ATCGTTTAAACACAAGAGTTCGTTTATTTTACGATGGTAATATCACGTGG
CTTGCACCGATCATTCTTCGATCGCAATGCAGTATCGACGTCACTTATTT
CCCCTTCGATACGCAAAATTGTACTTTGAAATTTGGCAGTTGGACATATG
AACGAGCAAGATTGAACCTCAGAGATGGAGGGATCAAAATGGCGCAAACT
AAGGAGTACGAGGCAAATTCCGAATGGAAATTGATTTCCACTTACAACAT
GCGCCATGACATTGAATATCCATGCTGTAAGGATGAATTTTACCCTGACA
TCACCTTCCATATCGTCATTGCAAGAAGATCTTTGTTTTATTTGTGCAAT
TTGATTTTCCCCATGACCGTCATTGGAATGCTGACCATGCTCTCCTTTCT
GTTACCTGCAGAATCGGGTGAACGAATTTCATTAGCTATCACGTTGCTAT
TGGCAATGACAGTTTTCATGTTGGTCGTCGCAGATATCATTCCGGCCACC
AGTGACGTCATTCCTTTGGTTGGGATTTTCTTCAGTGCTTCGATGATTGA
GATGGTGATCATGATCGTTGTGTTGTGTTATATTGAGCTTAACCTGGAAG
TCGATAAACAGTTGTGTTTATCCCCTTTTTTTCAGCAAACGAAAAGTCAA
ACCTTAATCATGAGTGTCTTCATACAACAGAAATGGAAAGATGAGACATT
AACATGGAAAAAGGAAGATTATGGTGGACACATCAAGAGCATAAATGTCG
ATCCTTCGCGAGTGTGGAAACCTGATATTGTTTTGTACAGCAATGCTGAC
GAAGACAAAACATTCGGTGGAAATTTAGATCGTTTAAACACAAGAGTTCG
TTTATTTTACGATGGTAATATCACGTGGCTTGCACCGATCATTCTTCGAT
CGCAATGCAGTATCGACGTCACTTATTTCCCCTTCGATACGCAAAATTGT
ACTTTGAAATTTGGCAGTTGGACATATGAACGAGCAAGATTGAACCTCAG
AGATGGAGGGATCAAAATGGCGCAAACTAAGGAGTACGAGGCAAATTCCG
AATGGAAATTGATTTCCACTTACAACATGCGCCATGACATTGAATATCCA
TGCTGTAAGGATGAATTTTACCCTGACATCACCTTCCATATCGTCATTGC
AAGAAGATCTTTGTTTTATTTGTGCAATTTGATTTTCCCCATGACCGTCA
TTGGAATGCTGACCATGCTCTCCTTTCTGTTACCTGCAGAATCGGGTGAA
CGAATTTCATTAGCTATCACGTTGCTATTGGCAATGACAGTTTTCATGTT
GGTCGTCGCAGATATCATTCCGGCCACCAGTGACGTCATTCCTTTGGTTG
GGATTTTCTTCAGTGCTTCGATGATTGAGATGGTGATCATGATCGTTGTG
TTGTGTTATATTGAGCTTAACCTGGAAGTCGATAAACAGTTGTGTTTATC
CCCTTTTTTTCAGCAAACGAAAAGTCAAACCTTAATCATGAGTGTCTTCA
TACAACAGAAATGGAAAGATGAGACATTAACATGGAAAAAGGAAGATTAT
GGTGGACACATCAAGAGCATAAATGTCGATCCTTCGCGAGTGTGGAAACC
TGATATTGTTTTGTACAGCAATGCTGACGAAGACAAAACATTCGGTGGAA
ATTTAGATCGTTTAAACACAAGAGTTCGTTTATTTTACGATGGTAATATC
ACGTGGCTTGCACCGATCATTCTTCGATCGCAATGCAGTATCGACGTCAC
TTATTTCCCCTTCGATACGCAAAATTGTACTTTGAAATTTGGCAGTTGGA
CATATGAACGAGCAAGATTGAACCTCAGAGATGGAGGGATCAAAATGGCG
CAAACTAAGGAGTACGAGGCAAATTCCGAATGGAAATTGATTTCCACTTA
CAACATGCGCCATGACATTGAATATCCATGCTGTAAGGATGAATTTTACC
CTGACATCACCTTCCATATCGTCATTGCAAGAAGATCTTTGTTTTATTTG
TGCAATTTGATTTTCCCCATGACCGTCATTGGAATGCTGACCATGCTCTC
CTTTCTGTTACCTGCAGAATCGGGTGAACGAATTTCATTAGCTATCACGT
TGCTATTGGCAATGACAGTTTTCATGTTGGTCGTCGCAGATATCATTCCG
GCCACCAGTGACGTCATTCCTTTGGTTGGGATTTTCTTCAGTGCTTCGAT
GATTGAGATGGTGATCATGATCGTTGTGTTGTGTTATATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023537XLOC_023537Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039089-proteinTCONS_00039089-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039089-exon-sc0002010-1491911889:26656..26752TCONS_00039089-exon-sc0002010-1491911889:26656..26752Clytia hemisphaericaexon
TCONS_00039089-exon-sc0002010-1510915933:26656..26752TCONS_00039089-exon-sc0002010-1510915933:26656..26752Clytia hemisphaericaexon
TCONS_00039089-exon-sc0002010-1575043694:26656..26752TCONS_00039089-exon-sc0002010-1575043694:26656..26752Clytia hemisphaericaexon
TCONS_00039089-exon-sc0002010-1491911889:27721..27833TCONS_00039089-exon-sc0002010-1491911889:27721..27833Clytia hemisphaericaexon
TCONS_00039089-exon-sc0002010-1510915933:27721..27833TCONS_00039089-exon-sc0002010-1510915933:27721..27833Clytia hemisphaericaexon
TCONS_00039089-exon-sc0002010-1575043694:27721..27833TCONS_00039089-exon-sc0002010-1575043694:27721..27833Clytia hemisphaericaexon
TCONS_00039089-exon-sc0002010-1491911889:28366..28598TCONS_00039089-exon-sc0002010-1491911889:28366..28598Clytia hemisphaericaexon
TCONS_00039089-exon-sc0002010-1510915933:28366..28598TCONS_00039089-exon-sc0002010-1510915933:28366..28598Clytia hemisphaericaexon
TCONS_00039089-exon-sc0002010-1575043694:28366..28598TCONS_00039089-exon-sc0002010-1575043694:28366..28598Clytia hemisphaericaexon
TCONS_00039089-exon-sc0002010-1491911889:29227..29445TCONS_00039089-exon-sc0002010-1491911889:29227..29445Clytia hemisphaericaexon
TCONS_00039089-exon-sc0002010-1510915933:29227..29445TCONS_00039089-exon-sc0002010-1510915933:29227..29445Clytia hemisphaericaexon
TCONS_00039089-exon-sc0002010-1575043694:29227..29445TCONS_00039089-exon-sc0002010-1575043694:29227..29445Clytia hemisphaericaexon
TCONS_00039089-exon-sc0002010-1491911889:32547..32713TCONS_00039089-exon-sc0002010-1491911889:32547..32713Clytia hemisphaericaexon
TCONS_00039089-exon-sc0002010-1510915933:32547..32713TCONS_00039089-exon-sc0002010-1510915933:32547..32713Clytia hemisphaericaexon
TCONS_00039089-exon-sc0002010-1575043694:32547..32713TCONS_00039089-exon-sc0002010-1575043694:32547..32713Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002010supercontigsc0002010:26656..32713 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0572222	0	0	0.0633868	0.0771673	0	0	0.0688736	0	0.179185	0.173921	0.0381096	19.9871	18.5181	0.0324926	0.104609	3.86608	3.96261	35.1428	62.835	9.44234	9.02524	1.60976	3.14169	4.39988	4.42741	0.863092	0.575584	0.0635121	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006201Neur_channel
IPR006202Neur_chan_lig-bd
IPR006029Neurotrans-gated_channel_TM
IPR018000Neurotransmitter_ion_chnl_CS
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005216ion channel activity
GO:0005230extracellular ligand-gated ion channel activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005230 extracellular ligand-gated ion channel activity
molecular_function GO:0005216 ion channel activity
Blast
[Close]
BLAST of TCONS_00039089 vs. Swiss-Prot (Human)
Match: ACHA3 (Neuronal acetylcholine receptor subunit alpha-3 OS=Homo sapiens GN=CHRNA3 PE=1 SV=4)

HSP 1 Score: 224.557 bits (571), Expect = 7.207e-69
Identity = 112/256 (43.75%), Postives = 166/256 (64.84%), Query Frame = 2 
Query:   62 SQTLIMSVFIQQKWKDETLTWKKEDYGGHIKSINVDPSRVWKPDIVLYSNADEDKTFGGNLDRLNTRVRLFYDGNITWLAPIILRSQCSIDVTYFPFDTQNCTLKFGSWTYERARLNLRDGGIKMAQTKEYEANSEWKLISTYNMRHDIEYPCCKDEFYPDITFHIVIARRSLFYLCNLIFPMTVIGMLTMLSFLLPAESGERISLAITLLLAMTVFMLVVADIIPATSDVIPLVGIFFSASMIEMVIMIVVLCYI 829
            +Q +  +++++Q W D  L W   DYGG  + + V   ++WKPDIVLY+NA  D           T+  L Y G +TW+ P I +S C IDVTYFPFD QNCT+KFGSW+Y++A+++L   G  M   K+Y  + EW +I     +HDI+Y CC +E YPDIT+ + I R  LFY  NLI P  +I  LT+L F LP++ GE+++L I++LL++TVF+LV+ + IP+TS VIPL+G +   +MI + + IV+  ++
Sbjct:   78 NQIMETNLWLKQIWNDYKLKWNPSDYGGA-EFMRVPAQKIWKPDIVLYNNAVGDFQVDDK-----TKALLKYTGEVTWIPPAIFKSSCKIDVTYFPFDYQNCTMKFGSWSYDKAKIDLVLIGSSM-NLKDYWESGEWAIIKAPGYKHDIKYNCC-EEIYPDITYSLYIRRLPLFYTINLIIPCLLISFLTVLVFYLPSDCGEKVTLCISVLLSLTVFLLVITETIPSTSLVIPLIGEYLLFTMIFVTLSIVITVFV 325
The following BLAST results are available for this feature:
BLAST of TCONS_00039089 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACHA37.207e-6943.75Neuronal acetylcholine receptor subunit alpha-3 OS... [more]
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