TCONS_00039039 (transcript) - C. hemisphaerica

Overview
NameTCONS_00039039
Unique NameTCONS_00039039
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1516

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00039039 ID=TCONS_00039039|Name=TCONS_00039039|organism=Clytia hemisphaerica|type=transcript|length=1516bp
TTAATCTGAGGATTTATAGAATGCGACTATTAgtatttggctcaaaaatc
taatttttcttcattatggGCTAATTAGCCtgtatgaaataggctaattt
gCTTATTCTAGGCCAATTAGCTGATATTCCgagatgataggctaatttga
agttatCCCTGCCTGACTGGTCTGTTTACACCTGTTTCTTTAAAGCCCTT
TTTATACTTCAGGCACAACTCAACAACTCAACCGACCAGGAAAGAGAATA
GTACGCTTATGGTGTAAGCATGTCTTTATTTcgtaaacaaagatggtaga
tcaaacactttcgatttcttaaaaacttttaagtttttcaagattttcac
aaTATGAAATCATTATGCCACTTCAGTTATGGGAGAGTTATATTTACAAA
GAGATTATGCTTTACAAAGAGATTATGCTTTTCGACGAGGTCAACAAAAG
AtgaatttgtaaattttgtaagAAAAGTTTTACCAAAAGAAACTCAAGTT
GGGAGTGTGAATTTAActcaaaatgaacaaaatggGACTGCAATTGTGTG
TATTGAAAATGAGGCAAGTTTGAATGCTATGACTGGTAAAATGATGTTAG
AACTTCATGAAGTAACGCAAGAGTTAAAACAATGGCGTCATGGAAAATTG
GTTCTTTTGAAAGGAAAAAGTAAACAATTTTGTAGTGGTGGAgatttgaa
gaattttatgAATTATTTGAAAACACCTGAACTAGGTTATATGATGTCTT
GTTTTATGCATTATACgatgaaagatttttcaaaacttccaaTGTCAACC
ATTGCCTTGATAGAAGGACAAACCTTGGGTGGTGGAGCAGAGaTAACAAC
AGCATGTGATTATCGATTGATGGAGAAGTCTGCATcaatTGGTTTTGTTC
AATCTAAACTTGGTATAACTCCTGGGTGGGGTGGTGCAACAAGGCTTTCT
CAAATCGTTGGATCGAGAAATGCGATGGAATTATTACTCTCCGGAAGAAG
GCTTTCACCAAACGATGCAATTCAGCTGCAACTCGTAGACAAAACATTTG
ATggaaataGAGAAGACCAAGAAGACGCTGTAGATTTTGCAATACAATGG
GCAGAAGAAAACGGTCTGCTCTCGTTGTCTCCTTCATTAACACaagaaat
ttgtaaattgatgaAAGAGGGAAAACCAAATCAAGATAAATCATTCCAAA
GCGAAAGAGAACTTTTCGGACGTGTTTGGCAAGGCAACGAACATCTATCA
GCATTATCTAAGAAGATAAAACATCGaaaataaattgtaaattttgaata
tattatatcatttcatttttttaaagaattaatttttttctatatgATGT
TACACatcattaattttttagttttgcTCCTACTGAAGATCGAAAAATTA
AGGCCTTGAAATTAATCTTGTCTGGTATATCTTATGCTCTTTTATTTCTT
GAATGATAtcgttttccaaatttttgaaaacatagtAATTTCCATGAGCA
TTAGTATCATCCATCA
Run BLAST on NCBI

protein sequence of TCONS_00039039-protein

>TCONS_00039039-protein ID=TCONS_00039039-protein|Name=TCONS_00039039-protein|organism=Clytia hemisphaerica|type=polypeptide|length=309bp
MKSLCHFSYGRVIFTKRLCFTKRLCFSTRSTKDEFVNFVRKVLPKETQVG
SVNLTQNEQNGTAIVCIENEASLNAMTGKMMLELHEVTQELKQWRHGKLV
LLKGKSKQFCSGGDLKNFMNYLKTPELGYMMSCFMHYTMKDFSKLPMSTI
ALIEGQTLGGGAEITTACDYRLMEKSASIGFVQSKLGITPGWGGATRLSQ
IVGSRNAMELLLSGRRLSPNDAIQLQLVDKTFDGNREDQEDAVDFAIQWA
EENGLLSLSPSLTQEICKLMKEGKPNQDKSFQSERELFGRVWQGNEHLSA
LSKKIKHRK
Run BLAST on NCBI

transcript from alignment at sc0001999:15256..20015+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00039039 ID=TCONS_00039039|Name=TCONS_00039039|organism=Clytia hemisphaerica|type=transcript|length=4760bp|location=Sequence derived from alignment at sc0001999:15256..20015+ (Clytia hemisphaerica)
TTAATCTGAGGATTTATAGAATGCGACTATTAgtatttggctcaaaaatc
taatttttcttcattatggGCTAATTAGCCtgtatgaaataggctaattt
gCTTATTCTAGGCCAATTAGCTGATATTCCgagatgataggctaatttga
agttatCCCTGCCTGACTGGTCTGTTTACACCTGTTTCTTTAAAGCCCTT
TTTATACTTCAGGCACAACTCAACAACTCAACCGACCAGGAAAGAGAATA
GTACGCTTATGGTGTAAGCATGTCTTTATTTcgtaaacaaagatggtaga
tcaaacactttcgatttcttaaaaacttttaagtttttcaagattttcac
aaTATGAAATCATTATGCCACTTCAGTTATGGGAGAGTTATATTTACAAA
GAGATTATGCTTTACAAAGAGATTATGCTTTTCGACGAGGTCAACAAAAG
AtgaatttgtaaattttgtaagAAAAGTTTTACCAAAAGAAACTCAAGTT
GGGAGTGTGAATTTAActcaaaatgaacaaaatggGACTGCAATTGTGTG
TATTGAAAATGAGGCAAGTTTGAATGCTATGACTGGTAAAATGATGTTAG
AACTTCATGAAGTAACGCAAGAGTTAAAACAATGGCGTCATGGAAAATTG
GTTCTTTTGAAAGGAAAAAGTAAACAATTTTGTAGTGGTGGAgatttgaa
gaattttatgAATTATTTGAAAACACCTGAACTAGGTTATATGATGTCTT
GTTTTATGCATTATACgatgaaagatttttcaaaacttccaaTGTCAACC
ATTGCCTTGATAGAAGGACAAACCTTGGGTGGTGGAGCAGAGGTtctgtt
atttttatttaattgatatttttttgatttgatctACTACTACTGTGAAG
TTCAAACTTGCAGTTTGGTTTTTATCCCGTCTcgtagaaaatttgatctg
tttgttCTTTCTTGAATCTactgataaaaaaaataaaatagaaattagAT
ATAATTTCAACCAGCAGAAAGATGGAAAGAAAAAATGTCTTGTCCATCTT
GTACTGTACACTGTATATATATAGCAAAAATTGTCAAAGTAAATTTGCAT
ACCTATACAACATATCGACTTTTTTTAACCTCCTAAAATtatgtttaaag
gttttgtttttaaataaaattgacatcGTTTGCTTTACTCATCAATTTAa
ctattttaatttacaagctttttgatattgaattgacacagatgtggagc
aagattccGTCACAAAGGGAAAACGAAAAACATTACTTATATCGGCCCAT
ATAACAATGGCAGAcattgtcctgatatgaaacatgtgtctgatatgggc
acacttatgtaaaaatttaaaattaaaaaaaaggagaaaaagttaattaa
aacctttaaactAAGATGTCATTTATATTTACACAtccttttcattttat
tatagaTAACAACAGCATGTGATTATCGATTGATGGAGAAGTCTGCATGT
AAAGAATATAAATTTTACTAACGTGGTTGAACACTAGACTTCCGAGACTT
GTGGTTCGTTTGATGTACTTTAGGTGTACAGCTTTTGTGTACAAAATCTT
CATTTCGCAATTTTCGGCTCTTTTTCTCTAagttcttattttaaaaaatt
cgcAATTCGCGAAAGTCTACGCTCATGAAAAATTCTACGTAAAGAAGAAC
GCTAAAAAAGCTATAAAACGTCAAATGATgataaatatgaaatttcaagt
aATAAGCCATTAACttcttaaaagttaagaacaaccgTTTTTATCCTTTT
TATCTGATTTAACATTTGTCGATTTAAAGTCAGCTTTTTTTATTAATTAG
AAGTtctcatttttatcaaattatcatcTAACCATTTGCGAAAATATAAC
TCGAACTTTCGAAACTTTCTGCTCATGAATTCTGTACGCCCAAGGTATTA
TTTTGACGTCGTTAATCGTCTCCAAACGTACAAGTATGAATAAACTTTGC
TTGATTTTACGAGCGAACTTTTACCAAAAAGGTGATCTTATTAAAAATTT
CGCGTAGGTTTCAATGGCAAATTTTACATTTGGTGAATGAAAACGTGATT
GAAATtaaccaaaaatctaaattcaattttttttgctgttcgACCTGCCC
TACCCCGCCCTACAGTTACATTATTATAGTGTCGtattacaatttatttt
atagcaatTGGTTTTGTTCAATCTAAACTTGGTATAACTCCTGGGTGGGG
TGGTGCAACAAGGCTTTCTCAAATCGTTGGATCGAGAAATGCGATGGAAT
TATTACTCTCCGGAAGAAGGCTTTCACCAAACGATGCAATTCAGCTGCAA
CTCGTAGACAAAACATTTGATggaaatgtaaataaaaatttttctctttc
atATTATAAAATACAGgttaaatatatgttttatggGTAGCTCTCATAAA
GCCTTGGCTGTTAATtctaatttcagatttttttcaaagtgaagaTGTAT
CAACTTTTTAGATTTTGTCATTTTAACGGAATTTTCTAGATCTTTTTATA
CCTAATTTGAAGAATTTAATGTATGTATGGCAAGCAAAATTACAAATAGT
TGTTTACGttatttttataataaagaGAGAAGACCAAGAAGACGCTGTAG
ATTTTGCAATACAATGGGCAGAAGAAAACGGTCTGCTCTCGTTGTCTCCT
TCATTAACACaagaaatttgtaaattgatgaAAGAGGGAAAACCAAATCA
AGATAAATCATTCCAAAGCGAAAGGTTTGTCATCTTTACTTTCAGAGCCG
GTGAAAACAGAGCAGGCGATAAGCTTGAGAGACTTCCGAATGTTTTTACT
TCCCTAAAAAATCTCATgctttggattttgaaattccttaaccctattcg
gcctagggggggagCTGTTTCAAGGTCATGGTAATAGcttctgaaataat
agagcttttgccactaaattttctgtaaattcctaacttttatttagctt
aaaaataaaaataaattgacacctaaaaattgaGCACCTTGAGCAtaatg
acatttctgacagtaaggtatCACAAAAACTGACatttttccaatacaaa
tttattttttatgtcaaatatagcgtttaaactgtaatttattgaatatt
tagaataaaataagcattttaaactcaggcaaccttttttctaaagcctt
tattagaatacaatagctatttataagaacaaaggaaattttcggttttt
ttttttactttgggcagatgagtgacgtcatcaaaaaaatctattttcaa
aagttaccttatgtgacaaggatcttgtgtgccaaaaaaacccactagat
caaaagttgaggggtggtacaggaaaagcccccctccctcctagttttga
accgccccaaaagcctagtatgaatagggttaaacatTCTAACAGTGTTT
GTCCTCGTAATGTTCTGATTAGTCTGAATCgaagacctctacaaaaccac
tgGTAGTACAATTCCCACAGCTTCTGGTGAGAATCAGTTGTGCCTAATTC
GTATCGGAGAGAGTTCAATTTCAAAGACATCAcgtaatacacccctgtct
cggtgATCcggtaaagttttaaaaacccACCTGGCGGGTGGCTCTGGCGG
GTggctttgaaaataaataaagttcACCAGGCTTCAACTTTAGATATCAA
AATCTCTCTGGGGTGAGGAATTTTAACTCGGCTTTCATCGTGTTGGggaa
aaatctttcattttaaagcattgCCCAGTTTGTTTTTCACTGATATGTAA
TACAAATTTCGATTATCAACGGGTTGCTCTAATTGATGCGATTTTTGACT
GGGGTATGAcaagaaatttacaaattttggccgTGGTAGagaatttcaat
gaattttgaCCGGGTCACTCATCGTCATTCCACTGGGGCTTTAAAATTAG
GCCAATTTTGGCAGTTTTTTTTCACCAGGCTATCCACCGGGGTGGATCTT
ACCGTGTCACCAATACAGGGGTGTTTTCATGTCTGAGGCTAGACTTTCCA
ACCCCTCGCGTAGGTAAAAACTATCTTATATACGATATACGGCTAAGAGT
GGCAAATTTCACGTCAAGAGTCAATCCTTACAGTAGATCATCACTAAGAG
AAATAACaacaaaaaatattctttacGGATAGATGGNAGAGTGGCAAATT
TCACGTCAAGAGTCAATCCTTACAGTAGATCATCACTAAGAGAAATAACa
acaaaaaatattctttacGGATAGATGGACAGTATAGAACTAActattcc
cattgaagaattatattctggttttcatgttattagatgctgttttagag
ctttagagctagcctgatgGATAGATGTGCAAAATTAAACTGAAGAAGTA
CCAACAGTATCAACTCATTCtacatttttgtttatttctttaatttaacA
GAGAACTTTTCGGACGTGTTTGGCAAGGCAACGAACATCTATCAGCATTA
TCTAAGAAGATAAAACATCGaaaataaattgtaaattttgaatatattat
atcatttcatttttttaaagaattaatttttttctatatgATGTTACACa
tcattaattttttagttttgcTCCTACTGAAGATCGAAAAATTAAGGCCT
TGAAATTAATCTTGTCTGGTATATCTTATGCTCTTTTATTTCTTGAATGA
TAtcgttttccaaatttttgaaaacatagtAATTTCCATGAGCATTAGTA
TCATCCATCA

Coding sequence (CDS) from alignment at sc0001999:15256..20015+

>TCONS_00039039 ID=TCONS_00039039|Name=TCONS_00039039|organism=Clytia hemisphaerica|type=CDS|length=4650bp|location=Sequence derived from alignment at sc0001999:15256..20015+ (Clytia hemisphaerica)
ATGAAATCATTATGCCACTTCAGTTATGGGAGAGTTATATTTACAAAGAG
ATTATGCTTTACAAAGAGATTATGCTTTTCGACGAGGTCAACAAAAGAtg
aatttgtaaattttgtaagAAAAGTTTTACCAAAAGAAACTCAAGTTGGG
AGTGTGAATTTAActcaaaatgaacaaaatggGACTGCAATTGTGTGTAT
TGAAAATGAGGCAAGTTTGAATGCTATGACTGGTAAAATGATGTTAGAAC
TTCATGAAGTAACGCAAGAGTTAAAACAATGGCGTCATGGAAAATTGGTT
CTTTTGAAAGGAAAAAGTAAACAATTTTGTAGTGGTGGAgatttgaagaa
ttttatgAATTATTTGAAAACACCTGAACTAGGTTATATGATGTCTTGTT
TTATGCATTATACgatgaaagatttttcaaaacttccaaTGTCAACCATT
GCCTTGATAGAAGGACAAACCTTGGGTGGTGGAGCAGAGaTAACAACAGC
ATGTGATTATCGATTGATGGAGAAGTCTGCATcaatTGGTTTTGTTCAAT
CTAAACTTGGTATAACTCCTGGGTGGGGTGGTGCAACAAGGCTTTCTCAA
ATCGTTGGATCGAGAAATGCGATGGAATTATTACTCTCCGGAAGAAGGCT
TTCACCAAACGATGCAATTCAGCTGCAACTCGTAGACAAAACATTTGATg
gaaataGAGAAGACCAAGAAGACGCTGTAGATTTTGCAATACAATGGGCA
GAAGAAAACGGTCTGCTCTCGTTGTCTCCTTCATTAACACaagaaatttg
taaattgatgaAAGAGGGAAAACCAAATCAAGATAAATCATTCCAAAGCG
AAAGAGAACTTTTCGGACGTGTTTGGCAAGGCAACGAACATCTATCAGCA
TTATCTAAGAAGATAAAACATCGaaaataaATGAAATCATTATGCCACTT
CAGTTATGGGAGAGTTATATTTACAAAGAGATTATGCTTTACAAAGAGAT
TATGCTTTTCGACGAGGTCAACAAAAGAtgaatttgtaaattttgtaagA
AAAGTTTTACCAAAAGAAACTCAAGTTGGGAGTGTGAATTTAActcaaaa
tgaacaaaatggGACTGCAATTGTGTGTATTGAAAATGAGGCAAGTTTGA
ATGCTATGACTGGTAAAATGATGTTAGAACTTCATGAAGTAACGCAAGAG
TTAAAACAATGGCGTCATGGAAAATTGGTTCTTTTGAAAGGAAAAAGTAA
ACAATTTTGTAGTGGTGGAgatttgaagaattttatgAATTATTTGAAAA
CACCTGAACTAGGTTATATGATGTCTTGTTTTATGCATTATACgatgaaa
gatttttcaaaacttccaaTGTCAACCATTGCCTTGATAGAAGGACAAAC
CTTGGGTGGTGGAGCAGAGaTAACAACAGCATGTGATTATCGATTGATGG
AGAAGTCTGCATcaatTGGTTTTGTTCAATCTAAACTTGGTATAACTCCT
GGGTGGGGTGGTGCAACAAGGCTTTCTCAAATCGTTGGATCGAGAAATGC
GATGGAATTATTACTCTCCGGAAGAAGGCTTTCACCAAACGATGCAATTC
AGCTGCAACTCGTAGACAAAACATTTGATggaaataGAGAAGACCAAGAA
GACGCTGTAGATTTTGCAATACAATGGGCAGAAGAAAACGGTCTGCTCTC
GTTGTCTCCTTCATTAACACaagaaatttgtaaattgatgaAAGAGGGAA
AACCAAATCAAGATAAATCATTCCAAAGCGAAAGAGAACTTTTCGGACGT
GTTTGGCAAGGCAACGAACATCTATCAGCATTATCTAAGAAGATAAAACA
TCGaaaataaATGAAATCATTATGCCACTTCAGTTATGGGAGAGTTATAT
TTACAAAGAGATTATGCTTTACAAAGAGATTATGCTTTTCGACGAGGTCA
ACAAAAGAtgaatttgtaaattttgtaagAAAAGTTTTACCAAAAGAAAC
TCAAGTTGGGAGTGTGAATTTAActcaaaatgaacaaaatggGACTGCAA
TTGTGTGTATTGAAAATGAGGCAAGTTTGAATGCTATGACTGGTAAAATG
ATGTTAGAACTTCATGAAGTAACGCAAGAGTTAAAACAATGGCGTCATGG
AAAATTGGTTCTTTTGAAAGGAAAAAGTAAACAATTTTGTAGTGGTGGAg
atttgaagaattttatgAATTATTTGAAAACACCTGAACTAGGTTATATG
ATGTCTTGTTTTATGCATTATACgatgaaagatttttcaaaacttccaaT
GTCAACCATTGCCTTGATAGAAGGACAAACCTTGGGTGGTGGAGCAGAGa
TAACAACAGCATGTGATTATCGATTGATGGAGAAGTCTGCATcaatTGGT
TTTGTTCAATCTAAACTTGGTATAACTCCTGGGTGGGGTGGTGCAACAAG
GCTTTCTCAAATCGTTGGATCGAGAAATGCGATGGAATTATTACTCTCCG
GAAGAAGGCTTTCACCAAACGATGCAATTCAGCTGCAACTCGTAGACAAA
ACATTTGATggaaataGAGAAGACCAAGAAGACGCTGTAGATTTTGCAAT
ACAATGGGCAGAAGAAAACGGTCTGCTCTCGTTGTCTCCTTCATTAACAC
aagaaatttgtaaattgatgaAAGAGGGAAAACCAAATCAAGATAAATCA
TTCCAAAGCGAAAGAGAACTTTTCGGACGTGTTTGGCAAGGCAACGAACA
TCTATCAGCATTATCTAAGAAGATAAAACATCGaaaataaATGAAATCAT
TATGCCACTTCAGTTATGGGAGAGTTATATTTACAAAGAGATTATGCTTT
ACAAAGAGATTATGCTTTTCGACGAGGTCAACAAAAGAtgaatttgtaaa
ttttgtaagAAAAGTTTTACCAAAAGAAACTCAAGTTGGGAGTGTGAATT
TAActcaaaatgaacaaaatggGACTGCAATTGTGTGTATTGAAAATGAG
GCAAGTTTGAATGCTATGACTGGTAAAATGATGTTAGAACTTCATGAAGT
AACGCAAGAGTTAAAACAATGGCGTCATGGAAAATTGGTTCTTTTGAAAG
GAAAAAGTAAACAATTTTGTAGTGGTGGAgatttgaagaattttatgAAT
TATTTGAAAACACCTGAACTAGGTTATATGATGTCTTGTTTTATGCATTA
TACgatgaaagatttttcaaaacttccaaTGTCAACCATTGCCTTGATAG
AAGGACAAACCTTGGGTGGTGGAGCAGAGaTAACAACAGCATGTGATTAT
CGATTGATGGAGAAGTCTGCATcaatTGGTTTTGTTCAATCTAAACTTGG
TATAACTCCTGGGTGGGGTGGTGCAACAAGGCTTTCTCAAATCGTTGGAT
CGAGAAATGCGATGGAATTATTACTCTCCGGAAGAAGGCTTTCACCAAAC
GATGCAATTCAGCTGCAACTCGTAGACAAAACATTTGATggaaataGAGA
AGACCAAGAAGACGCTGTAGATTTTGCAATACAATGGGCAGAAGAAAACG
GTCTGCTCTCGTTGTCTCCTTCATTAACACaagaaatttgtaaattgatg
aAAGAGGGAAAACCAAATCAAGATAAATCATTCCAAAGCGAAAGAGAACT
TTTCGGACGTGTTTGGCAAGGCAACGAACATCTATCAGCATTATCTAAGA
AGATAAAACATCGaaaataaATGAAATCATTATGCCACTTCAGTTATGGG
AGAGTTATATTTACAAAGAGATTATGCTTTACAAAGAGATTATGCTTTTC
GACGAGGTCAACAAAAGAtgaatttgtaaattttgtaagAAAAGTTTTAC
CAAAAGAAACTCAAGTTGGGAGTGTGAATTTAActcaaaatgaacaaaat
ggGACTGCAATTGTGTGTATTGAAAATGAGGCAAGTTTGAATGCTATGAC
TGGTAAAATGATGTTAGAACTTCATGAAGTAACGCAAGAGTTAAAACAAT
GGCGTCATGGAAAATTGGTTCTTTTGAAAGGAAAAAGTAAACAATTTTGT
AGTGGTGGAgatttgaagaattttatgAATTATTTGAAAACACCTGAACT
AGGTTATATGATGTCTTGTTTTATGCATTATACgatgaaagatttttcaa
aacttccaaTGTCAACCATTGCCTTGATAGAAGGACAAACCTTGGGTGGT
GGAGCAGAGaTAACAACAGCATGTGATTATCGATTGATGGAGAAGTCTGC
ATcaatTGGTTTTGTTCAATCTAAACTTGGTATAACTCCTGGGTGGGGTG
GTGCAACAAGGCTTTCTCAAATCGTTGGATCGAGAAATGCGATGGAATTA
TTACTCTCCGGAAGAAGGCTTTCACCAAACGATGCAATTCAGCTGCAACT
CGTAGACAAAACATTTGATggaaataGAGAAGACCAAGAAGACGCTGTAG
ATTTTGCAATACAATGGGCAGAAGAAAACGGTCTGCTCTCGTTGTCTCCT
TCATTAACACaagaaatttgtaaattgatgaAAGAGGGAAAACCAAATCA
AGATAAATCATTCCAAAGCGAAAGAGAACTTTTCGGACGTGTTTGGCAAG
GCAACGAACATCTATCAGCATTATCTAAGAAGATAAAACATCGaaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023491XLOC_023491Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039039-exon-sc0001999-1491911889:15256..16097TCONS_00039039-exon-sc0001999-1491911889:15256..16097Clytia hemisphaericaexon
TCONS_00039039-exon-sc0001999-1510915933:15256..16097TCONS_00039039-exon-sc0001999-1510915933:15256..16097Clytia hemisphaericaexon
TCONS_00039039-exon-sc0001999-1575043694:15256..16097TCONS_00039039-exon-sc0001999-1575043694:15256..16097Clytia hemisphaericaexon
TCONS_00039039-exon-sc0001999-1491911889:16711..16753TCONS_00039039-exon-sc0001999-1491911889:16711..16753Clytia hemisphaericaexon
TCONS_00039039-exon-sc0001999-1510915933:16711..16753TCONS_00039039-exon-sc0001999-1510915933:16711..16753Clytia hemisphaericaexon
TCONS_00039039-exon-sc0001999-1575043694:16711..16753TCONS_00039039-exon-sc0001999-1575043694:16711..16753Clytia hemisphaericaexon
TCONS_00039039-exon-sc0001999-1491911889:17460..17632TCONS_00039039-exon-sc0001999-1491911889:17460..17632Clytia hemisphaericaexon
TCONS_00039039-exon-sc0001999-1510915933:17460..17632TCONS_00039039-exon-sc0001999-1510915933:17460..17632Clytia hemisphaericaexon
TCONS_00039039-exon-sc0001999-1575043694:17460..17632TCONS_00039039-exon-sc0001999-1575043694:17460..17632Clytia hemisphaericaexon
TCONS_00039039-exon-sc0001999-1491911889:17881..18029TCONS_00039039-exon-sc0001999-1491911889:17881..18029Clytia hemisphaericaexon
TCONS_00039039-exon-sc0001999-1510915933:17881..18029TCONS_00039039-exon-sc0001999-1510915933:17881..18029Clytia hemisphaericaexon
TCONS_00039039-exon-sc0001999-1575043694:17881..18029TCONS_00039039-exon-sc0001999-1575043694:17881..18029Clytia hemisphaericaexon
TCONS_00039039-exon-sc0001999-1491911889:19707..20015TCONS_00039039-exon-sc0001999-1491911889:19707..20015Clytia hemisphaericaexon
TCONS_00039039-exon-sc0001999-1510915933:19707..20015TCONS_00039039-exon-sc0001999-1510915933:19707..20015Clytia hemisphaericaexon
TCONS_00039039-exon-sc0001999-1575043694:19707..20015TCONS_00039039-exon-sc0001999-1575043694:19707..20015Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00039039-proteinTCONS_00039039-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001999supercontigsc0001999:15256..20015 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
25.6854	24.7029	12.9391	10.6443	2.82054	2.51822	3.66433	3.52852	3.52261	3.48499	3.54762	3.2391	2.76209	2.9997	4.90558	5.65704	7.6007	8.45882	2.27955	3.14026	7.82094	8.25682	12.0758	11.3748	3.64297	4.78586	4.02881	3.01892	6.86922	7.79674
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001753Crotonase_core_superfam
IPR018376Enoyl-CoA_hyd/isom_CS
IPR029045ClpP/crotonase-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0003824 catalytic activity
Blast
[Close]
BLAST of TCONS_00039039 vs. Swiss-Prot (Human)
Match: ECHD1 (Ethylmalonyl-CoA decarboxylase OS=Homo sapiens GN=ECHDC1 PE=1 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 6.103e-52
Identity = 98/261 (37.55%), Postives = 158/261 (60.54%), Query Frame = 3 
Query:  501 GSVNLTQNEQNGTAIVCIENEASLNAMTGKMMLELHEVTQELKQWRHGKLVLLKGKSKQFCSGGDLKNFMNYLKTPELGYMMSCFMHYTMKDFSKLPMSTIALIEGQTLGGGAEITTACDYRLMEKSASIGFVQSKLGITPGWGGATRLSQIVGSRNAMELLLSGRRLSPNDAIQLQLVDKTFDGNREDQEDAVDFAIQWAEENGLLSLSPSLTQEICKLMKEGKP-NQDKSFQSERELFGRVWQGNEHLSALSKKIKHRK 1280
            GS++L Q E NG  I+ + N + +NA +G MML+L E   EL+ W  GK ++++G    F SG DL N +  L TPE G  +  FM  T+  F +LP+ ++AL++G  LGGGAE TTACD+RLM   + I FV  ++GI P WGG TRL +I+GSR A+++L    +L   +A+ + +V++    +  D+  +++ A +W ++   +   P + + + K +  G+    +++ Q+ER+L G VW G  +L A++KK K  K
Sbjct:   53 GSIDL-QKEDNGIGILTLNNPSRMNAFSGVMMLQLLEKVIELENWTEGKGLIVRGAKNTFSSGSDL-NAVKSLGTPEDGMAVCMFMQNTLTRFMRLPLISVALVQGWALGGGAEFTTACDFRLMTPESKIRFVHKEMGIIPSWGGTTRLVEIIGSRQALKVLSGALKLDSKNALNIGMVEEVLQSS--DETKSLEEAQEWLKQ--FIQGPPEVIRALKKSVCSGRELYLEEALQNERDLLGTVWGGPANLEAIAKKGKFNK 307
The following BLAST results are available for this feature:
BLAST of TCONS_00039039 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ECHD16.103e-5237.55Ethylmalonyl-CoA decarboxylase OS=Homo sapiens GN=... [more]
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