TCONS_00038976 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038976
Unique NameTCONS_00038976
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1141

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038976 ID=TCONS_00038976|Name=TCONS_00038976|organism=Clytia hemisphaerica|type=transcript|length=1141bp
GAGGCATTCAGGTGTCCAGGGTCGTGTTTGATGCTACAATGCTATGGGTG
GGTGTGCGGTTGGATCAGATCAAAACTttaatcaatattttttcacaCTT
CAAATCTTTTTCTCACACCTGAAATTGTCATTCTGTGATGGGAATGTTTC
TGTTTCCCCCATGTAATCCATGACTGTCGATAACTAATCAATattaatcg
atggattagatatcgattagaATCTATAATTGATAGCTTATcgcttttca
aaattatttgagGCTTGATTAGTATCAATTGCTATAGATCAAATCGATAG
TATCGATTTATGATTGATAATCAATAATAATTGATATTGATACGAGAAGG
TACTCTTTTGTGCCTAATTGTGGgtcgaataagcagggggtgggTACTCT
AGGAGAACatccataaaatggggggtcataATTAAGCGATTCGGGGTGAT
TATCtttaattatatattatatttaatTATATACCTTTTTCTAGAAAAAC
TTAAGTactaataacaaaaaaatgaaatataaaagCTAATAAAACTGGTA
ATGTCAGAGGAAACAATTGCAAATATCACAGAATTTGGTCACCAAATCCT
TGATGATATTAACCAAACTATTGATACTGGCATCTTCGACAATGAATGGA
TTGTGTTCAAATTGgaaacattcaaaaaacttttaagtACTGCTGTTAGC
ATATATGATATATGCGAGGAGCCAATAAATAGAATCATGTCTATCATAGA
TTTGCTACAAACTGTTCCTCGCCAAGAGACAAATAAACCATCAGGAATCT
CAGACATGCATCAATCACATTCAAGTAAACCTGGGCGGCCAAAAATTCTT
ATTGACTGTGAAAAGCTTGATTACTTATTCAATTTAAACTTCACAGCAAA
CGATATTGCAAACTTTTTTGGTACTAGTAGAAGAACAATATGTCGGAGGT
TatcagaaaaatcaatgtcaaTCGTCGATACGTATTCTAAAATGTCAGAT
TCTCAATTAGACGAATGTgtaaaaaatattcttgacGAGTTTCCCAGAAC
TGGATACCGCAGAATGAAGGGGTTTTTACAATCAAATGGACACAGGGTAC
AAGAGAAAAGAGTTCGGGCTTGTATGCATCGAGTAGGTTTN
Run BLAST on NCBI

protein sequence of TCONS_00038976-protein

>TCONS_00038976-protein ID=TCONS_00038976-protein|Name=TCONS_00038976-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
MSEETIANITEFGHQILDDINQTIDTGIFDNEWIVFKLETFKKLLSTAVS
IYDICEEPINRIMSIIDLLQTVPRQETNKPSGISDMHQSHSSKPGRPKIL
IDCEKLDYLFNLNFTANDIANFFGTSRRTICRRLSEKSMSIVDTYSKMSD
SQLDECVKNILDEFPRTGYRRMKGFLQSNGHRVQEKRVRACMHRVGX
Run BLAST on NCBI

transcript from alignment at sc0001980:17733..20741-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038976 ID=TCONS_00038976|Name=TCONS_00038976|organism=Clytia hemisphaerica|type=transcript|length=3009bp|location=Sequence derived from alignment at sc0001980:17733..20741- (Clytia hemisphaerica)
GAGGCATTCAGGTGTCCAGGGTCGTGTTTGATGCTACAATGCTATGGGTG
GGTGTGCGGTTGGATCAGATCAAAACTTTAATCAATATTTTTTCACACTT
CAAATCTTTTTCTCACACCTGAAATTGTCATTCTGTGATGGGAATGTTTC
TGTTTCCCCCATGTAATCCATGACTGTCGATAACTAATCAATATTAATCG
ATGGATTAGATATCGATTAGAATCTATAATTGATAGCTTATCGCTTTTCA
AAATTATTTGAGGCTTGATTAGTATCAATTGCTATAGATCAAATCGATAG
TATCGATTTATGATTGATAATCAATAATAATTGATATTGATACGAGAAGG
TACTCTTTTGTGCCTAATTGTGGGTCGAATAAGCAGGGGGTGGGTACTCT
AGGAGAACATCCATAAAATGGGGGGTCATAATTAAGCGATTCGGGGTGAT
TATCTTTAATTATATATTATATTTAATTATATACCTTTTTCTAGAAAAAC
TTAAGTACTAATAACAAAAAAATGAAATATAAAAGCTAATAAAACTGGTA
ATGTCAGAGGTAAAATTTCTGTCAATGATCAATCTTTGTATGTCTAGTCA
TGAACTTGATGTTACCTTATTAATGGAACTAATTTTTGCGGGAACTAATT
TTTGCAGTGCAAAATAAANTCAAAAAAGGGCCTAAATTTAGGTCATGAGC
CTCATGGCTGAAATTTTACAGGTGATAAGTACAACCCTTAGGGACAATGA
AAATCGAAAATCTAACCAAAAAATCAGGTTCCTTGACCGGGTCAGATGCC
CCTGAAGTTGAAAAATTTGAGAATTTTCGGGGGGTCGAAAATGACCCCTT
TCTTAGACAAAACTTTCTATAGCGTTTGATCTATTCAATATTTAGCGATG
AAATTTGGACAGGTGTCCAGGGTCGTGTTTGATGCTACAATGCTATGGGT
GGGTGTGCGGTTGGATCAGATCAAAACTTTAATCAATATTTTTTCACACT
TCAAATCTTTTTCTCACACCTGAAATTGTCATTCTGTGATGGGAATGTTT
CTGTTTCCCCCATGTAATCCATGACTGTCGATAACTAATCAATATTAATC
GATGGATTAGATATCGATTAGAATCTATAATTGATAGCTTATCGCTTTTC
AAAATTATTTGAGGCTTGATTAGTATCAATTGCTATAGATCAAATCGATA
GTATCGATTTATGATTGATAATCAATAATAATTGATATTGATACGAGAAG
GTACTCTTTTGTGCCTAATTGTGGGTCGAATAAGCAGGGGGTGGGTACTC
TAGGAGAACATCCATAAAATGGGGGGTCATAATTAAGCGAATCGGGGTGA
TTATCTTTAATTATATATTATATTTAATTATATACCTTTTTCTAGAAAAA
CTTAAGTACTAATAACAAAAAAATGAAATATAAAAGCTAATAAAACTGGT
AATGTCAGAGGTAAAATTTCTGTCAATGATCAATCTTTGTATGTCTAGTC
ATGAACTTGATGTTACCTTATTAATGGAACTAATTTTTGCGGGAACTAAT
TTTTGCAGTGCAAAATAAAATTGAAAAAGTCGTATTTTGCAGGAATTAAT
TTTTGTGGTTTTGCCCTTTTTTGGACAAATTTCTTTCATTTTCCTAGTAA
ACAAACAATAGGAAATTCCAACATATTTCAGATTAGTAAAGATTTTCAAA
ATTCAACTTTTGCTAGTATAGAAGATTTTCTTTTACTTACTATTGAAATA
TCACTAAATTGATCCCTGAACTCCTTCAACAAACTAAAGAAATCATGTAA
GCAATGAAGTCACAAGTCTTGAAATGTTCTACTTTCAATTTCAGGAAACA
ATTGCAAATATCACAGAATTTGGTCACCAAATCCTTGATGATATTAACCA
AACTATTGATACTGGCATCTTCGACAATGAATGGATTGTGTTCAAATTGG
AAACATTCAAAAAACTTTTAAGTACTGCTGTTAGCATATATGATATATGC
GAGGAGCCAATAAATAGAATCATGTCTATCATAGATTTGCTACAAACTGT
TCCTCGCCAAGAGACAAATAAACCATCAGGAATCTCAGACATGCATCAAT
CACATTCAAGTAAACCTGGGCGGCCAAAAATTCTTATTGACTGTGAAAAG
CTTGATTACTTATTCAATTTAAACTTCACAGCAAACGATATTGCAAACTT
TTTTGGTACTAGTAGGTTAGTTGATTTGTTTCATGATTGATATGACTGAA
ATTTGGCGAGAAAAAAACTTCTTAAAGGGACATTTAAAAAGTGCGTTTGT
CGCCGAGGGGGGGGGTGGGGTCAGCCAAAAAGCGAACGAAAATGAGCAGA
GAGTACTGTAGTCAAGCTTGTCAGTACGTTTACCTTTTTGAGGGGGGGGT
GTGCTCGTAAAGTCCAATACTAATTCTGTTGTTAACTTAGTTGTCCACTT
TGTATTAGTTTGACTCATAGCATTTTATATACATTGCATATACATAAAAT
ATTTCGTCTTTCTTGTAAGAAGAACCAATATATTTTGGAGATCAAGAAAA
TAATGATAAAAAAAAGTCGGAACAGGAATTTAAAAGCTTTTGCATTTTTT
TCTTGGAAACTAATTTTTGCAGTATCAGTGAATTTTGGCTGTTACTTAAA
TTATTTCACCAAATTTTTCTAATTCTGTAGATTCTGCGGTTAAGGCCAGC
AAAATAAAAAAACTTACAAAAATTCGTTCTTTAAAAAAATATATTTTGTT
TGTTTTTTAATTTCTATATGTTTAGAGACACTTTTAATCGTTTTTTAGAA
GAACAATATGTCGGAGGTTATCAGAAAAATCAATGTCAATCGTCGATACG
TATTCTAAAATGTCAGATTCTCAATTAGACGAATGTGTAAAAAATATTCT
TGACGAGTTTCCCAGAACTGGATACCGCAGAATGAAGGGGTTTTTACAAT
CAAATGGACACAGGGTACAAGAGAAAAGAGTTCGGGCTTGTATGCATCGA
GTAGGTTTN

Coding sequence (CDS) from alignment at sc0001980:17733..20741-

>TCONS_00038976 ID=TCONS_00038976|Name=TCONS_00038976|organism=Clytia hemisphaerica|type=CDS|length=1773bp|location=Sequence derived from alignment at sc0001980:17733..20741- (Clytia hemisphaerica)
AAGAACAATATGTCGGAGGTTATCAGAAAAATCAATGTCAATCGTCGATA
CGTATTCTAAAATGTCAGATTCTCAATTAGACGAATGTGTAAAAAATATT
CTTGACGAGTTTCCCAGAACTGGATACCGCAGAATGAAGGGGTTTTTACA
ATCAAATGGACACAGGGTACAAGAGAAAAGAGTTCGGGCTTGTATGCATC
GAGTAGGTTTNGAAACAATTGCAAATATCACAGAATTTGGTCACCAAATC
CTTGATGATATTAACCAAACTATTGATACTGGCATCTTCGACAATGAATG
GATTGTGTTCAAATTGGAAACATTCAAAAAACTTTTAAGTACTGCTGTTA
GCATATATGATATATGCGAGGAGCCAATAAATAGAATCATGTCTATCATA
GATTTGCTACAAACTGTTCCTCGCCAAGAGACAAATAAACCATCAGGAAT
CTCAGACATGCATCAATCACATTCAAGTAAACCTGGGCGGCCAAAAATTC
TTATTGACTGTGAAAAGCTTGATTACTTATTCAATTTAAACTTCACAGCA
AACGATATTGCAAACTTTTTTGGTACTAGTAGATGTCAGAGAAGAACAAT
ATGTCGGAGGTTATCAGAAAAATCAATGTCAATCGTCGATACGTATTCTA
AAATGTCAGATTCTCAATTAGACGAATGTGTAAAAAATATTCTTGACGAG
TTTCCCAGAACTGGATACCGCAGAATGAAGGGGTTTTTACAATCAAATGG
ACACAGGGTACAAGAGAAAAGAGTTCGGGCTTGTATGCATCGAGTAGGTT
TNGAAACAATTGCAAATATCACAGAATTTGGTCACCAAATCCTTGATGAT
ATTAACCAAACTATTGATACTGGCATCTTCGACAATGAATGGATTGTGTT
CAAATTGGAAACATTCAAAAAACTTTTAAGTACTGCTGTTAGCATATATG
ATATATGCGAGGAGCCAATAAATAGAATCATGTCTATCATAGATTTGCTA
CAAACTGTTCCTCGCCAAGAGACAAATAAACCATCAGGAATCTCAGACAT
GCATCAATCACATTCAAGTAAACCTGGGCGGCCAAAAATTCTTATTGACT
GTGAAAAGCTTGATTACTTATTCAATTTAAACTTCACAGCAAACGATATT
GCAAACTTTTTTGGTACTAGTAGATGTCAGAGAAGAACAATATGTCGGAG
GTTATCAGAAAAATCAATGTCAATCGTCGATACGTATTCTAAAATGTCAG
ATTCTCAATTAGACGAATGTGTAAAAAATATTCTTGACGAGTTTCCCAGA
ACTGGATACCGCAGAATGAAGGGGTTTTTACAATCAAATGGACACAGGGT
ACAAGAGAAAAGAGTTCGGGCTTGTATGCATCGAGTAGGTTTNGAAACAA
TTGCAAATATCACAGAATTTGGTCACCAAATCCTTGATGATATTAACCAA
ACTATTGATACTGGCATCTTCGACAATGAATGGATTGTGTTCAAATTGGA
AACATTCAAAAAACTTTTAAGTACTGCTGTTAGCATATATGATATATGCG
AGGAGCCAATAAATAGAATCATGTCTATCATAGATTTGCTACAAACTGTT
CCTCGCCAAGAGACAAATAAACCATCAGGAATCTCAGACATGCATCAATC
ACATTCAAGTAAACCTGGGCGGCCAAAAATTCTTATTGACTGTGAAAAGC
TTGATTACTTATTCAATTTAAACTTCACAGCAAACGATATTGCAAACTTT
TTTGGTACTAGTAGATGTCAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023433XLOC_023433Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038976-proteinTCONS_00038976-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038976-exon-sc0001980-1575043694:20183..20741TCONS_00038976-exon-sc0001980-1575043694:20183..20741Clytia hemisphaericaexon
TCONS_00038976-exon-sc0001980-1575043694:18527..18897TCONS_00038976-exon-sc0001980-1575043694:18527..18897Clytia hemisphaericaexon
TCONS_00038976-exon-sc0001980-1575043694:17733..17943TCONS_00038976-exon-sc0001980-1575043694:17733..17943Clytia hemisphaericaexon
TCONS_00038976-exon-sc0001980-1510915933:20183..20741TCONS_00038976-exon-sc0001980-1510915933:20183..20741Clytia hemisphaericaexon
TCONS_00038976-exon-sc0001980-1510915933:18527..18897TCONS_00038976-exon-sc0001980-1510915933:18527..18897Clytia hemisphaericaexon
TCONS_00038976-exon-sc0001980-1510915933:17733..17943TCONS_00038976-exon-sc0001980-1510915933:17733..17943Clytia hemisphaericaexon
TCONS_00038976-exon-sc0001980-1491911889:20183..20741TCONS_00038976-exon-sc0001980-1491911889:20183..20741Clytia hemisphaericaexon
TCONS_00038976-exon-sc0001980-1491911889:18527..18897TCONS_00038976-exon-sc0001980-1491911889:18527..18897Clytia hemisphaericaexon
TCONS_00038976-exon-sc0001980-1491911889:17733..17943TCONS_00038976-exon-sc0001980-1491911889:17733..17943Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001980supercontigsc0001980:17733..20741 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.868843	0.494234	0.245937	0	2.83157	1.08019	1.02395	1.91722	0.373236	0.377873	0.880254	0.626865	0.192613	0.100015	0.328905	0.132362	0	0.278551	0.0769666	0.08054	0.770043	0.921927	0.415082	0.301896	0.155473	0.34689	0.992796	0.317862	0.241087	0.491259
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011991WHTH_DNA-bd_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038976 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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