TCONS_00038964 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038964
Unique NameTCONS_00038964
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2692

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038964 ID=TCONS_00038964|Name=TCONS_00038964|organism=Clytia hemisphaerica|type=transcript|length=2692bp
GTTATGCACCATGGTATCTGTGTGTCGCGAATACAGATCCGGTGATGTCT
GGAGAGCTCTGCGCTTCCTACTCGAAAAAATAGGAAGAAATGGTAAAGTT
CCTATCTATAAGAAGAATCTTTTATGTCTCACCTATTGCTCACCTTTTAT
AATTGTTCTGAAACTCAAATACGCCACCTCAAACAAAACAAATTACACTA
TGATCAGAAATGGAAGAATCAAATTGACTCCAGTTACTGTTCTACTCTTT
GTTTACTTTGTTTTTAGAATGGTACAATCAATGCTAATACTTTCGTACAG
GTGTATAGGGAATATAACTTTGCACAGTATGAAATTGAAAAACGCCTGTC
ATTTTCTTGGTTTGACTGTCCTGCTTGCGGAGATCAACAGCATTCCTGTC
ACGTGGACGGAAACTGCAAGCTTTATCGTTATAAAACATCGGGGAAACTT
GTATCAAATTCTTACTATGGTGACATTTTCATTGCCAAAAATCAACATGT
AGATGACCTTTTGGAAGAACTGAACTACAATCCAAAACGGAACTCAGAAC
CTGTCCATTGTGGTGGAAGTATTTTGAAAGCAGCTCAAAATGTTTCTAGG
AAAAAAGCATCATTGGATGAAACTGGTTTCGAATATTGTGTATGCAGACA
TGGTGTTGCACAGCGCGGTGTTAATATGTATAGGGGAGAGATTTTTGGCT
ATGCCTACTACTTGCAAAAGGGAATCATGGTTGACAACAATGTAAAGTTT
ATGTGGTATGATGTTATCTGTAAATATTGGGCATGGCTAGAATCACACGA
CCCATTCATTAAGGAAGATATGAACCCTGCCCTATCGGTTCTGCATGGTA
AAATGCATCAAATGCTTTGTCAGGTTAAATATGGTGGTAGGTGGCAGACA
GGTGCTGCTTTAACAAGTGGAGAGGAAGCTGAGCAAGTCAATAGTTATTT
GTCCAGATTGACAAACACTACAAAATACATGCTTCCACAAAATCGAGACG
ATACCATAACTGAGTTTGCTATGGATTGGAACGGACGCAAAATTCGAAAT
CTGGCAATGACACTTGTCCAAAGATATAAAAAAGTTCAAAAAGAATTAGG
AAAAATATCTAAACCCACAAACTTCGATGAACTTGAACAGAAGAAACAGG
ATTTTATTTTAACTACTCAAGAATACGCTAAAAAAGGAGAAGGAGATGAA
AAAGAAAAACTAATGGAAGAAATAGCAAAGATCAGATTCGAAGTTGCAAT
GAGAAGTGCCATGATTGGTAAATTTGCTGCATCGAGTAAACAAAGAACAA
AGCTTAGACGTAAAAATACTAACGACAACGAAAAAGCCGATAAACTTGAG
GCGAAGTTGAAAGAAATCTTTGGAAACAGTGACAGTTGGAAAAAACACTT
AGAGGAGACAGAACGTAAACTTGAAATCCGGAAAAAGTCAAAACAAACGA
TTGACGATGGCATGTTGTACCAGAGGCACTTAGAAGAGAAAAAGCTTTTA
GTCGAAGAAATGAAAAATTTTACTAGCCACTACAAAAAGAAACTTATGTC
CCTGAAAACTGGAAAAAGTTGCGCTTTGGCTTCAAATTACACTTCTGATA
TACACGACAAGCCAACGCTGGAAATGCAACACGATACCTTGATGGAAGAA
GGGGAACAAAATTTGAGAAGGAAAGCTATTGACTTGTGTTCGCAGCAACT
ATCAATCGGAATCGAACTCTTCAGCAAAGTTGTTACAAATGATTTTTCGG
AAATTCCAGACGAAGAGAACGAAAGTGAATTTCCCAAATCTGACCATGAA
ACCAGCGACACGAGTAGTGATGAAATAGACGAACACAACGAATCGTGACT
TTAATTTGTACACGCCTTTTTATAAGAAAAGTGTACTTTGGATGAGGGTC
AAGTGTTCTTAAGAAATTGCCAAAATTGAGGGTGAAATATTCTTAACGTA
TTCTTAATTCTTTAGACTTGTTTTGGACTTTGAGCTAAAATTACATTTCT
GCCTAAAAGTTTAAAAAACTAAGGAAGTAGTTTTCTCAATTAACCAAACA
CAAAATGACTGTATTCTTATCAAATTCTGTGAACTCACCCTAGAGGTTAC
TCTTAGGGTATTCTTACAATTTTTCCAATTTTCACCCTGATATTCtgata
gaagatattcttacaaaaaaaagcgtgtatgaaaatgaaaatgcttacGT
TTATTCAACTCACATAATACAACAGTACTTTAATTACAAATTATGAAGAG
TAAGAATTGAAAACTTGATTTGGCTATTATGATGTTATTTTATCTTTGAA
TATCAATAaaattatgatatatttttaAGACATTATTTATCAAAGTagag
tttatttatttttatgtcTTCCATAATCTAGGGCGTCTTTCTTGCGACTA
AACATTATACAGTCTAAGTATTACCAACCGAATCAAACTTCCGAACGTCA
TATCTCAGTATTCTGATTTCGAGGGTtatatttacaatttagaaTTCCTC
ATTCTGTACGATGATAGTCCTTATCCTCGTATTTATTCGAGTTGTTagat
atttatatattttatacacaCATCATATACTTTATATCAACACTTTTCTT
GTAAGAAAAACCAATATTTTTGGAGATTAAAGAAACAATGTTAAGAAAaa
atattatgctgatataagcacaATAAACCTTTTCAAATCGCA
Run BLAST on NCBI

transcript from alignment at sc0001978:25693..30292+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038964 ID=TCONS_00038964|Name=TCONS_00038964|organism=Clytia hemisphaerica|type=transcript|length=4600bp|location=Sequence derived from alignment at sc0001978:25693..30292+ (Clytia hemisphaerica)
GTTATGCACCATGGTATCTGTGTGTCGCGAATACAGATCCGGTGATGTCT
GGAGAGCTCTGCGCTTCCTACTCGAAAAAATAGGAAGAAATGGTAAAGTT
CCTATCTATAAGAAGAATCTTTTATGTCTCACCTATTGCTCACCTTTTAT
AATTGTTCTGAAACTCAAATACGCCACCTCAAACAAAACAAATTACACTA
TGATCAGAAATGGAAGAATCAAATTGACTCCAGTTACTGTTCTACTCTTT
GTTTACTTTGTTTTTAGAATGGTACAATCAATGCTAATACTTTCGTACAG
GTGTATAGGGAATATAACTTTGCACAGTATGAAATTGAAAAACGCCTGTC
ATTTTCTTGGTTTGACTGTCCTGCTTGCGGAGATCAACAGCATTCCTGTC
ACGTGGACGGAAACTGCAAGCTTTATCGTTATAAAACATCGGGGAAGTTA
GTATCTTTTTTCCTGTTTCCCTTTAGGTACATGTCACTCGTTTTCATAAA
AATATGCCGGCAACAAATTACTGAACTAAATAAAAAGGATTTATACAGCA
TTTAGAAAATGATATTTTTATGATATGTTTAACTCAAAAACAATTTTGCT
CATAATTGAACTACTTGTAATATTTTTCTCATAATTTAGACTTGTATCAA
ATTCTTACTATGGTGACATTTTCATTGCCAAAAATCAACATGTAGATGAC
CTTTTGGAAGAACTGAACTACAATCCAAAACGGGTACTTTAAATAAGTTT
TAATGATTGTAAAGTCTGATACTTTTAAACCAGAGGAACTTAACTATCAA
TTGGTTGTTGGCTCATATCTCTGTATTGTATTTCTTTAGAACTCAGAACC
TGTCCATTGTGGTGGAAGTATTTTGAAAGCAGCTCAAAATGTTTCTAGGA
AAAAAGCATCATTGGATGAAACTGGTTTCGAATATTGTGTATGCAGACAT
GGTGTTGCACAGCGCGGTGTTAATATGTATAGGGGAGAGATTTTTGGCTA
TGCCTACTACTTGCAAAAGGGAATCATGGTTGACAACAATGTAAAGTTTA
TGTGGTATGATGTTATCTGTAAATATTGGGCATGGCTAGAATCACACGAC
CCATTCATTAAGGAAGATATGAACCCTGCCCTATCGGTTCTGCATGGTAA
AATGCATCAAATGCTTTGTCAGGTTTGATTTTATTTAATTTACCATAAAT
TTTCATATTTTCTTATTTGGGCGAGAATTTATTTCAGCGAGTCGCCAATT
GTTTTAATCGGTGAGTCATGGAATTTTTTAATTTTGGTGAGTCCTTATTT
AGTGCTCGCCATCAAAATTACTATTCTATAGGTATATAAATTGAAATTTT
AGGTATAATTTTTTACGGGCAGTCACAAAAAGTTGATATGATAACAATTG
CTTACTTTTTTATTCCTCAGGTTAAATATGGTGGTAGGTGGCAGACAGGT
GCTGCTTTAACAAGTGGAGAGGAAGCTGAGCAAGTCAATAGTTATTTGTC
CAGATTGACAAACACTACAAAATACATGCTTCCACAAAGTATGTATAGAA
TTAGACATTTTAACGATTTTGTAAGACAATGATGACATTTATTTTTCTAA
TGATTTAGGTAGCATTTTTAACGAATTTTTTCTTATGTAATTATGATTCT
TTATTCAAAGATCGAGACGATACCATAACTGAGTTTGCTATGGATTGGAA
CGGACGCAAAATTCGAAATCTGGCAATGACACTTGTCCAAAGATATAAAA
AAGTATGAAGTAGTCAGTGTTCTCTGAGATAATATTTTTGATTAGTACTT
TCTCAAACATCAAATTATAATCAATTCGTTTTATCAAACTTGAACCATCC
TTGTGTTTTGCGCTTTACTACATTTGAGGAAATTCGAAATGTTTAATTAC
TGTTTTCTATCTATTTCAGGTTCAAAAAGAATTAGGAAAAATATCTAAAC
CCACAAACTTCGATGAACTTGAACAGAAGAAACAGGATTTTATTTTAACT
ACTCAAGGTTTGTAATTTTTCAAACAAATAAAAAAAGTGCACTATTTCTG
CCTATTCTTTTTAAAAGCAACGTAAAAAACCTTTATAATGTTTTAGAATA
CGCTAAAAAAGGAGAAGGAGATGAAAAAGAAAAACTAATGGAAGAAATAG
CAAAGATCAGATTCGAAGTTGCAATGAGAAGTGCCATGATTGGTAAATTT
GCTGGTATGTATGCAACGCCCTACTGGGTACGGGTTTTGCAACAACTGTG
CGGTAATAGTTACTAATAGAGCTTTTACTCGTTTTCAGTCTATATTTTCG
CCAAAACTTTACCAGTGACGTCTTTGATGTAAAATAAATATGTCTCTCTT
TTTGTTTGAACAAAATTCAATGGCATAAATTGAATAAATTGTCTTTAACT
TTCGTTTTTCATTATTAGCATCGAGTAAACAAAGAACAAAGCTTAGACGT
AAAAATACTAACGACAACGAAAAAGCCGATAAACTTGAGGCGAAGTTGAA
AGAAATCTTTGGAAACAGTGACAGTTGGAAAAAACACTTAGAGGAGACAG
AACGTAAACTTGGTATGTTATTTCACAAAACGTATTTTGTCCAGCAACTT
TATTTTCCTTTTGATCAGCTCTAACTTGAATACTGAAGTTTTCTCAGAAT
CTTTCAGAACATGATATTGTATTTTTAGAAATCCGGAAAAAGTCAAAACA
AACGATTGACGATGGCATGTTGTACCAGAGGCACTTAGAAGAGAAAAAGC
TTTTAGTCGAAGAAATGAAAAATTTTACTAGCCACTACAAAAAGAAACTT
ATGTCCCTGAAAACTGGTTCGTAATTTTGCTTTAGATATAGCACAAAAAT
TGCAGAATCACCTACACGAGTAGTAGAAAGTTTATGCGCGTGTATACTTT
TTAGTATTACAATAAGAAAACAGCAAAGGGTATTGTCTCAGTGGAATGAC
TTTGAAAAAAGAGGTGAACGTGAACCTGTGCTTTTTACGTTTCCATGGTA
ACCCATAGTGGGTATCCCAGTAGGAATTTTTGGGGAGGTGTTAAACTTTT
TGCTGGCGGTTAGAGGTTTTTATATTTTTCTCAATAGAATTTCTATTGTT
CTTTTTGTTAAGGGAGCTTCTGACCTCTCTGCCCACTAAGTTGCTTTGTA
GATTTGAAATAAAGATTCATTTTAACTACAACCACCATTGTTTTACCACT
GACTTCAAAATGATAAATGAAATTATTTTGAAAATATTTGATTTGACCAA
TATCACTACCTGTAATAATAAGAACGTTTTTCTCGTTTTTTAAAGGAAAA
AGTTGCGCTTTGGCTTCAAATTACACTTCTGATATACACGACAAGCCAAC
GCTGGAAATGCAACACGATGTAAGAGTTTATGAACTATTTTCACCAAACT
TAATTTATATCTTTTATATTTTCTGTCTAAGATTCGTACAGTGTAAACTT
CAGGGAATTTTTTGAACGATTTTTACATTAACATATGTTTTATATATTTT
TTCAATGAATGTTGAAGGTAACAAACCTACATTTTTCTTTCAGACCTTGA
TGGAAGAAGGGGAACAAAATTTGAGAAGGAAAGCTATTGACTTGTGTTCG
CAGCAACTATCAATCGGAATCGAACTCTTCAGCAAAGTTGTTACAAATGA
TTTTTCGGAAATTCCAGACGAAGAGAACGAAAGTGAATTTCCCAAATCTG
ACCATGAAACCAGCGACACGAGTAGTGATGAAATAGACGAACACAACGAA
TCGTGACTTTAATTTGTACACGCCTTTTTATAAGAAAAGTGTACTTTGGA
TGAGGGTCAAGTGTTCTTAAGAAATTGCCAAAATTGAGGGTGAAATATTC
TTAACGTATTCTTAATTCTTTAGACTTGTTTTGGACTTTGAGCTAAAATT
ACATTTCTGCCTAAAAGTTTAAAAAACTAAGGAAGTAGTTTTCTCAATTA
ACCAAACACAAAATGACTGTATTCTTATCAAATTCTGTGAACTCACCCTA
GAGGTTACTCTTAGGGTATTCTTACAATTTTTCCAATTTTCACCCTGATA
TTCtgatagaagatattcttacaaaaaaaagcgtgtatgaaaatgaaaat
gcttacGTTTATTCAACTCACATAATACAACAGTACTTTAATTACAAATT
ATGAAGAGTAAGAATTGAAAACTTGATTTGGCTATTATGATGTTATTTTA
TCTTTGAATATCAATAaaattatgatatatttttaAGACATTATTTATCA
AAGTagagtttatttatttttatgtcTTCCATAATCTAGGGCGTCTTTCT
TGCGACTAAACATTATACAGTCTAAGTATTACCAACCGAATCAAACTTCC
GAACGTCATATCTCAGTATTCTGATTTCGAGGGTtatatttacaatttag
aaTTCCTCATTCTGTACGATGATAGTCCTTATCCTCGTATTTATTCGAGT
TGTTagatatttatatattttatacacaCATCATATACTTTATATCAACA
CTTTTCTTGTAAGAAAAACCAATATTTTTGGAGATTAAAGAAACAATGTT
AAGAAAaaatattatgctgatataagcacaATAAACCTTTTCAAATCGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_023425XLOC_023425Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038964-exon-sc0001978-1491911889:25693..26138TCONS_00038964-exon-sc0001978-1491911889:25693..26138Clytia hemisphaericaexon
TCONS_00038964-exon-sc0001978-1510915933:25693..26138TCONS_00038964-exon-sc0001978-1510915933:25693..26138Clytia hemisphaericaexon
TCONS_00038964-exon-sc0001978-1575043694:25693..26138TCONS_00038964-exon-sc0001978-1575043694:25693..26138Clytia hemisphaericaexon
TCONS_00038964-exon-sc0001978-1491911889:26332..26425TCONS_00038964-exon-sc0001978-1491911889:26332..26425Clytia hemisphaericaexon
TCONS_00038964-exon-sc0001978-1510915933:26332..26425TCONS_00038964-exon-sc0001978-1510915933:26332..26425Clytia hemisphaericaexon
TCONS_00038964-exon-sc0001978-1575043694:26332..26425TCONS_00038964-exon-sc0001978-1575043694:26332..26425Clytia hemisphaericaexon
TCONS_00038964-exon-sc0001978-1491911889:26532..26864TCONS_00038964-exon-sc0001978-1491911889:26532..26864Clytia hemisphaericaexon
TCONS_00038964-exon-sc0001978-1510915933:26532..26864TCONS_00038964-exon-sc0001978-1510915933:26532..26864Clytia hemisphaericaexon
TCONS_00038964-exon-sc0001978-1575043694:26532..26864TCONS_00038964-exon-sc0001978-1575043694:26532..26864Clytia hemisphaericaexon
TCONS_00038964-exon-sc0001978-1491911889:27113..27230TCONS_00038964-exon-sc0001978-1491911889:27113..27230Clytia hemisphaericaexon
TCONS_00038964-exon-sc0001978-1510915933:27113..27230TCONS_00038964-exon-sc0001978-1510915933:27113..27230Clytia hemisphaericaexon
TCONS_00038964-exon-sc0001978-1575043694:27113..27230TCONS_00038964-exon-sc0001978-1575043694:27113..27230Clytia hemisphaericaexon
TCONS_00038964-exon-sc0001978-1491911889:27353..27444TCONS_00038964-exon-sc0001978-1491911889:27353..27444Clytia hemisphaericaexon
TCONS_00038964-exon-sc0001978-1510915933:27353..27444TCONS_00038964-exon-sc0001978-1510915933:27353..27444Clytia hemisphaericaexon
TCONS_00038964-exon-sc0001978-1575043694:27353..27444TCONS_00038964-exon-sc0001978-1575043694:27353..27444Clytia hemisphaericaexon
TCONS_00038964-exon-sc0001978-1491911889:27612..27699TCONS_00038964-exon-sc0001978-1491911889:27612..27699Clytia hemisphaericaexon
TCONS_00038964-exon-sc0001978-1510915933:27612..27699TCONS_00038964-exon-sc0001978-1510915933:27612..27699Clytia hemisphaericaexon
TCONS_00038964-exon-sc0001978-1575043694:27612..27699TCONS_00038964-exon-sc0001978-1575043694:27612..27699Clytia hemisphaericaexon
TCONS_00038964-exon-sc0001978-1491911889:27789..27896TCONS_00038964-exon-sc0001978-1491911889:27789..27896Clytia hemisphaericaexon
TCONS_00038964-exon-sc0001978-1510915933:27789..27896TCONS_00038964-exon-sc0001978-1510915933:27789..27896Clytia hemisphaericaexon
TCONS_00038964-exon-sc0001978-1575043694:27789..27896TCONS_00038964-exon-sc0001978-1575043694:27789..27896Clytia hemisphaericaexon
TCONS_00038964-exon-sc0001978-1491911889:28111..28254TCONS_00038964-exon-sc0001978-1491911889:28111..28254Clytia hemisphaericaexon
TCONS_00038964-exon-sc0001978-1510915933:28111..28254TCONS_00038964-exon-sc0001978-1510915933:28111..28254Clytia hemisphaericaexon
TCONS_00038964-exon-sc0001978-1575043694:28111..28254TCONS_00038964-exon-sc0001978-1575043694:28111..28254Clytia hemisphaericaexon
TCONS_00038964-exon-sc0001978-1491911889:28371..28508TCONS_00038964-exon-sc0001978-1491911889:28371..28508Clytia hemisphaericaexon
TCONS_00038964-exon-sc0001978-1510915933:28371..28508TCONS_00038964-exon-sc0001978-1510915933:28371..28508Clytia hemisphaericaexon
TCONS_00038964-exon-sc0001978-1575043694:28371..28508TCONS_00038964-exon-sc0001978-1575043694:28371..28508Clytia hemisphaericaexon
TCONS_00038964-exon-sc0001978-1491911889:28988..29061TCONS_00038964-exon-sc0001978-1491911889:28988..29061Clytia hemisphaericaexon
TCONS_00038964-exon-sc0001978-1510915933:28988..29061TCONS_00038964-exon-sc0001978-1510915933:28988..29061Clytia hemisphaericaexon
TCONS_00038964-exon-sc0001978-1575043694:28988..29061TCONS_00038964-exon-sc0001978-1575043694:28988..29061Clytia hemisphaericaexon
TCONS_00038964-exon-sc0001978-1491911889:29236..30292TCONS_00038964-exon-sc0001978-1491911889:29236..30292Clytia hemisphaericaexon
TCONS_00038964-exon-sc0001978-1510915933:29236..30292TCONS_00038964-exon-sc0001978-1510915933:29236..30292Clytia hemisphaericaexon
TCONS_00038964-exon-sc0001978-1575043694:29236..30292TCONS_00038964-exon-sc0001978-1575043694:29236..30292Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001978supercontigsc0001978:25693..30292 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.635731	1.19575	0.67138	0.20606	3.25956	2.21686	6.24711	8.03558	4.45508	5.67159	4.94397	3.37615	5.64286	4.30388	4.15645	6.93437	3.49664	3.95329	4.9047	1.92599	1.45549	0.17719	2.26905	1.80009	21.5907	16.6953	6.46814	6.02127	2.9755	1.60519
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038964 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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