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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038846 ID=TCONS_00038846|Name=TCONS_00038846|organism=Clytia hemisphaerica|type=transcript|length=2092bp
TAGATATGACACACTTCCAAAGAACTTTCACCGTTGAAAAAACACTGATC
TACACACATAACTCTGGATTGGATGATGATGTTCATCATTACAAACCAAC
AAAACCCATAACAGAGGAACAAGAATGTAGACCGATACGAACTGGTCCAA
GCATTACGAAGTCTGTTGCCGACTTTAGAGAAAGATCGTTGCAGTATTTT
AAGGAAAACACAGTCACAGGGGAGCGACATTTTCCGCCATCATTTTATGT
TAAACATATCAAGGTCAAAGATTGGCTACAAAAACTGGACGAAATGAAAA
TGTTCAAAGATGTGAAATTTTTGACACCATACAATCCACGAAACCATTTG
TACATCATGGGATTGGATGATAAGGATTGTAATGAAATCATAACAACAAA
ACATGAATCGTATGATGACGTCATTCTGATTGTTGATTTTGATCGTCACC
TGTTGATGGTATGTTCTATCATCACTTCAAATGATCGAGAAACTCTGTAT
CAAGGAATACAAAAACTTAATGATGTCACAAAAACAATTATCCATGTAGC
CAGTGATGTCATCAAAAACAATTACGTCACCATTATGTCGGTCCCAGTTT
TCCCTGACGTTGACGCGCACACTTTAAAACTGTATTCAATATTCAATGAC
AATTTTGTTCGTTGCAGTGGAATGTTGGTCACTAAAAACGATTTAGATTG
CACACGCAAGTTGGAAACCAAATTGGAAAGCTTCTGtggaaaaactttga
aagagATGGCATCTATTAAAAGACAAGGTACCTCTTCAAGAGATCCAACT
CTGTTCAAGGGTTTATGTGGTGAAATAATGAGTTCAATGGCCTCCACAAC
ACAATATCTGCCGAAGATATCGGAAAATGTTCCAGAAAAGATCGACACTA
TCCTTCTAAACCATAATCANATATCGGAAAATGTTCCAGAAAAGATCGAC
ACTATCCTTCTAAACCATAATCAAATTAACCTCATCAACGACCCAACGAA
ATGGAAGATTATTAAAGGACCATTTGGGTCTGGTAAGAGTGTCTCCATGT
ACGAGATTGCACGAAAACTTATGCATCAAACAGATCAACTTTATTACATT
ACTTTTGATCCATTCTCATTGGTGGATTTAAAGTTCCAAGAGGGGTTCAA
CAACTTGTGTGACGAGGAAAAACTTGACAAGTCCAAGATCAAAGCTTTCA
GTATCGGTGATGCACTAGAAGGATCAACAATCGATATTTCGGATGTTTAC
GATATGATGTATCCACCGCGTGTCAATCTTTGTCGAGTATTGGAATATCT
TTATTCTGATAAAACAAAACATTTAGGATTTATGATCGACGAGTTCCCTG
GTGATTTTCTCACAACCAAATACGCTGAAAACCTCAAAGAAAGCCTCGAA
AAGAATTTCCAGGATACGACTGTCATTCTTGCGCTCCAAAGTGTAGAAAA
AAAACGCAAAGTTATCAAATCAGGATTTTTCAATGATGATGTGAAGGAAG
TTGAGAGATGCGACTACCATCAAACCGGTATGAAAGTTCTCACTTTGGAC
AAAACAATGCGAATGGCAGTAAATATTCACCAGATGATTGAAATCTTTCA
GGAAGAAATCGAAAAAGAAATCGTAGACGTACCTTTGGAATACAAAACAC
TAGTTCTACGCAGACCGTACGAACCCTCCGCCCGCAAAATAAGAAAAGCT
ACCAAGGTTGTCCCTCTTAAGCCTCAagaacagaaaaaacaaaagcaaCC
GAGACCAACAGATGACACCAGTCTCCAAGATAACCCGAATTATCAAAGTG
TGCGAAGAAAAACCAACATTGCCTCATTctacgatccagaaaaattgtTA
ACAGACATAAACGCTNAAAGGCTCCTTTACCTTTTGATTGCCAGAAAGAG
TATTGTTTATCCACTCAAgcatcatcatttttttctataGCGCAAAAACT
AAACCTTACCTGTCTTCATGAAAAAGACTGTTTAGATGTCGGTTATTTTT
GGACGTACTGTATGGAGCGTTTTACACTCCGAGACTGAACTCTGAACCCT
GTTATTGAAGAGAACGTGGCGGATCGGGTTCGCATCGTAAAT Run BLAST on NCBI transcript from alignment at sc0001946:19197..24344+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038846 ID=TCONS_00038846|Name=TCONS_00038846|organism=Clytia hemisphaerica|type=transcript|length=5148bp|location=Sequence derived from alignment at sc0001946:19197..24344+ (Clytia hemisphaerica)
TAGATATGACACACTTCCAAAGAACTTTCACCGTTGAAAAAACACTGATC
TACACACATAACTCTGGATTGGATGATGATGTTCATCATTACAAACCAAC
AAAACCCATAACAGAGGAACAAGAATGTAGACCGATACGAACTGGTCCAA
GCATTACGAAGTCTGTTGCCGACTTTAGAGAAAGATCGTTGCAGTATTTT
AAGGAAAACACAGTCACAGGGGAGCGACATTTTCCGCCATCATTTTATGT
TAAACATATCAAGGTCAAAGATTGGCTACAAAAACTGGACGAAATGAAAA
TGTTCAAAGATGTGAAATTTTTGACACCATACAATCCACGAAACCATTTG
TACATCATGGGATTGGATGATAAGGATTGTAATGAAATCATAACAACAAA
ACATGAATCGTATGATGACGTCATTCTGATTGTTGATTTTGATCGTCACC
TGTTGATGGTATGTTCTATCATCACTTCAAATGATCGAGAAACTCTGTAT
CAAGGAATACAAAAACTTAATGATGTCACAAAAACAATTATCCATGTAGC
CAGTGATGTCATCAAAAACAATTACGTCACCATTATGTCGGTCCCAGTTT
TCCCTGACGTTGACGCGCACACTTTAAAACTGTATTCAATATTCAATGAC
AATTTTGTTCGTTGCAGTGGAATGTTGGTCACTAAAAACGATTTAGATTG
CACACGCAAGTTGGAAACCAAATTGGAAAGCTTCTGtggaaaaactttga
aagagATGGCATCTATTAAAAGACAAGGTACCTCTTCAAGAGATCCAACT
CTGTTCAAGGGTTTATGTGGTGAAATAATGAGTTCAATGGCCTCCACAAC
ACAATATCTGCCGAAGATATCGGAAAATGTTCCAGAAAAGATCGACACTA
TCCTTCTAAACCATAATCANATATCGGAAAATGTTCCAGAAAAGATCGAC
ACTATCCTTCTAAACCATAATCAAATTAACCTCATCAACGACCCAACGAA
ATGGAAGATTATTAAAGGACCATTTGGGTCTGGtatgttttttttgcatt
tcttccaaaaatttcttaatttttttttagaatttctgGTTGTATTAGTT
CAAAAATGTCTTAATCCCTATTGTCTCCAagctttttcgatttttcttgt
CCCAGCGGGTGGGGGGCGGtcgaatctaccaccctcgattattaaTATTC
CACAAGAGCTGTGGCCATGAAAATTGGTACAGATTTTCTCCATCATGACA
CGACACAAATTtccaagaagaaaaagaaaattaatgacgtcatctaaaAA
GCAATGACATCATCAGAAATTTTCCAATtatcggaaaaaagcccaaattt
ATGGGTTACAAAAATGTCTGTCACAGTCGAACCAACAAACAAAGGTATTT
AAATTCTGTtcaaagattctgaaaggttgttctttaacataattgcNGTA
TTTAAATTCTGTtcaaagattctgaaaggttgttctttaacataattgcc
ggttttgcagtttccataaagattttatcttaaaatctgTGCAGAAGATG
AGTAAgttgtaattttctttttttttcaattttttcaaattcatattgTC
AAGgtctatcacgtgtcaaaatttgaaaattattgcaataaatatttcag
aagttatcagcactttaaaattttgaatatcagcgatttttagctgggtt
ttatgtcatgtttcacaataaaacCATACAACCtcatctggacaacctat
gaccctaagaTTTGCTTATGCACAAGTactattaaaagtcagaaaatttt
atattgtttcaaaaaatttttctccgagatatacacAAACCAAAATAATC
AGGAGTCattcataaaatattttgggGACATTTAATTGCAACGTAAAAca
tttttgaatgaatttttttcaaattttgctgacgtcagcagaaatcagca
aaaaacgaaattttgcaataaagtgtTGACGTCAGCAAAAGTAAAAAAAA
AAGTTTTTTTCAAAATGATCCTTCTGCTTGTGGCTCAAAACAGTTTCAAT
TCACTCCACCATCCACATCCAATTTTTTTCAATTATTTAATAGGTAAGAG
TGTCTCCATGTACGAGATTGCACGAAAACTTATGCATCAAACAGATCAAC
TTTATTACATTACTTTTGATCCATTCTCATTGGTGGATTTAAAGTTCCAA
GAGGGGTTCAACAACTTGTGTGACGAGGAAAAACTTGACAAGTCCAAGAT
CAAAGCTTTCAGTATCGGTGATGCACTAGAAGGATCAACAATCGATATTT
CGGATGTTTACGATATGATGTATCCACCGCGTGTCAATCTTTGTCGAGTA
TTGGAATATCTTTATTCTGATAAAACAAAACATTTAGGATTTATGATCGA
CGAGTTCCCTGGTGATTTTCTCACAACCAAATACGCTGAAAACCTCAAAG
AAAGCCTCGAAAAGAATTTCCAGGATACGACTGTCATTCTTGCGCTCCAA
AGTGTAGAAAAAAAACGCAAAGTTATCAAATCAGGATTTTTCAATGGTAG
GTCATTCTTAAACTTTGCCTAGATCAGAAAAATCATCACTTTTTACTCAT
ATTTCAATTTGTACTTTAAAGAAAATACGATAGATTCTAAGCTAATAGAG
TATACCTTTAGACCATATCTTTTATTACATGGGTTAATTGGAAGAGAATG
TTTTGCAAGTCTTGCATAtcctaccagtggataccccttaagaCCGCATA
ctccttaaaacctacaaagttggGTTTTGGGCTCTCTTAACTACCAGGCC
TAATTTTATATtacatatttcactttttagAACCTCTTATATAGGTACTT
TTATAAAATACCAAACTTAAAGAACTTTGATTATCTTAAAGCGtcgtaaa
attcaaatttattcaaaattttatcaagaNTATAAAACTTAAAGAATTTT
AATTATTGCAAAGTGtcgtaaaattcaaatttattcaaacttttatcaaa
aatctaGTTTTTCGGACCTAGAGACTACACAATTGATTTTAAGGTTATAA
AACCtaaacttgttttttattttttcacaaagcaataaaaacttttttag
cagcttttacaaaaagCATACTCATAAATTATAGATAGCCTAGACTCACC
AGAAAATGTTTCATTAGTTTCAGCCCTTACAGTTTTCTATATCAGATTTT
AAGGGGTACGTATCCTATCCACTGGTACTTTGCTTTTGAAGCAAGCGAAC
CATTCACTTCAGTATAAGCAATATTTTGCATTAAAACGGTTGCTCAAATT
ATATTTAACTTCCTTTTGTAGACGATGTAAAGGAAGTTGAGAGATGCGAC
TACCATCAAACCGGTATGAAAGTTCTCACTTTGGACAAAACAATGCGAAT
GGCAGTAAATATTCACCAGATGATTGAAATCTTTCAGGAAGAAATCGAAA
AAGAAATCGTAGACGTACCTTTGGAATACAAAACACTAGTTCTACGCAGA
CCGTACGAACCCTCCGCCCGCAAAATAAGAAAAGCTACCAAGGTTGTCCC
TCTTAAGCCTCAagaacagaaaaaacaaaagcaaCCGAGACCAACAGATG
ACACCAGTCTCCAAGATAACCCGAATTATCAAAGTGTGCGAAGAAAAACC
AACATTGCCTCATTctacgatccagaaaaattgtTNCGAGTTTCCTGGTG
ATTTTCTCACAACCAAATACGCTGAAAACCTCAAAGAAAGCCTCGAAAAG
AATTTCCAGAATACGACTGTCATTCTTGCGCTCCAAAGTGTAGAAAAAAA
ACGCAAAGTTATCAAATCAGGATTTTTCAATGGTAGGTCATTCTTAAACT
TTGCGTAGATCAGAAAAATCATCACTTTTTACTCATATTTCAATTTGTAC
TTTAAAGAAAATACGATAAATTCTAAGCTAATAGAGTATACCTTTAGACC
ATATCTTTTATTACATGTGTCAATTGGAAGAGAATGTTTTGCAAGTCTTG
CATATCCTACCAATGGATAAGACCACATActccttaaaacctacaaagtt
ggGTTTTGGGCTCTCTTAACTACCAGGCCTAATTTTATATTACATACATC
ACTTTTTAGAACCTCTTATATAGGTACTTTTATAAAATACCAAACTTAAA
GAATTTTGATCATCGCAAAGTGtcgtaaaattcaaatttattcaaaattt
tatcaagaatcccttcaaaaaatctagtTTTTCGGACCTAGAGACTACAC
AATTGATTTTAAGGTTATAAAACCtaaacttgttttttattttttcacga
agcaataaaaactttcttagcagcttttacaaaaagCATACTCATAAATT
ATAGATAGCCTAGACTCACCAGAAAATGTTTCATTAGTTTCAGCCCTTAC
AGTTTTCCATATCAGATTTTAAGGGGTACGTATCCTATCCACTGGTACTT
TGCTTTTGAAGCAAGCGAACCATTCACTTCAGTATAAGCAATATTTTGCA
TTAAAACGGTTGCTCAATTTATTATTAACTTCCTTTTGTAGATGATGTGA
AGGAAGTTGAGAGATGCGACTACCATCAAACCGGTATGAAAGTTCTCACT
TTGGACAAAACAATGCGAATGGCAGTAAATATTCACCAGATGATTGAAAT
CTTTCAGGAAGAAATCGAAAAAGAAATCGTAGACGTACCTTTGGAATACA
AAACACTAGTTCTACGCAGACCGTACGAACCCTCCGCCCGCAAAATAAGA
AAAGCTACCAAGGTTGTCCCTCTTAAGCCTCAagaacagaaaaaacaaaa
gcaaCCGAGACCAACAGATGACACCAGTCTCCAAGATAACCCGAATTATC
AAAGTGTGCGAAGAAAAACCAACATTGCCTCATTctacgatccagaaaaa
ttgtTAACAGACATAAACGCTNAAAGGCTCCTTTACCTTTTGATTGCCAG
AAAGAGTATTGTTTATCCACTCAAgcatcatcatttttttctataGCGCA
AAAACTAAACCTTACCTGTCTTCATGAAAAAGACTGTTTAGATGTCGGTT
ATTTTTGGACGTACTGTATGGAGCGTTTTACACTCCGAGACTGAACTCTG
AACCCTGTTATTGAAGAGAACGTGGCGGATCGGGTTCGCATCGTAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038846-exon-sc0001946-1491911889:19197..20228 | TCONS_00038846-exon-sc0001946-1491911889:19197..20228 | Clytia hemisphaerica | exon |
| TCONS_00038846-exon-sc0001946-1510915933:19197..20228 | TCONS_00038846-exon-sc0001946-1510915933:19197..20228 | Clytia hemisphaerica | exon |
| TCONS_00038846-exon-sc0001946-1575043694:19197..20228 | TCONS_00038846-exon-sc0001946-1575043694:19197..20228 | Clytia hemisphaerica | exon |
| TCONS_00038846-exon-sc0001946-1491911889:21290..21742 | TCONS_00038846-exon-sc0001946-1491911889:21290..21742 | Clytia hemisphaerica | exon |
| TCONS_00038846-exon-sc0001946-1510915933:21290..21742 | TCONS_00038846-exon-sc0001946-1510915933:21290..21742 | Clytia hemisphaerica | exon |
| TCONS_00038846-exon-sc0001946-1575043694:21290..21742 | TCONS_00038846-exon-sc0001946-1575043694:21290..21742 | Clytia hemisphaerica | exon |
| TCONS_00038846-exon-sc0001946-1491911889:23738..24344 | TCONS_00038846-exon-sc0001946-1491911889:23738..24344 | Clytia hemisphaerica | exon |
| TCONS_00038846-exon-sc0001946-1510915933:23738..24344 | TCONS_00038846-exon-sc0001946-1510915933:23738..24344 | Clytia hemisphaerica | exon |
| TCONS_00038846-exon-sc0001946-1575043694:23738..24344 | TCONS_00038846-exon-sc0001946-1575043694:23738..24344 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001946 | supercontig | sc0001946:19197..24344 + |
Blast
The following BLAST results are available for this feature:
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