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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038529 ID=TCONS_00038529|Name=TCONS_00038529|organism=Clytia hemisphaerica|type=transcript|length=2049bp
TTTTCGTGTGTATTTTACCGAATAGTCCCGCGCGGCTTTTTCTTTTCTAC
GCGCGGAAAtataaaccaaaaaaaatatgGCTGTATGTCTCCTCGTGTTA
CAATGTATGAAAACAAGGACTCAAATATGAATAGAAGACTCCTAAAAAAA
Tgctttaattatttttatttttcctaataaataaaatatgattgttttaa
aattattatcTGATTTTAAATGGATGTAAATTTCGAAATTATTGTTCTAA
GAAATAAAACAAGTCTCAAAGATTGGTCTGTATTTTATTACCCTTTTGTT
TCCACCGCGAAagccagaaaaacacaaaaacacaagtaaatttttttcaa
catcTCACACGTGCGTTTGTAATATCTTCTAGAAGCCTTATTGAATTTTA
TACTCTATTTACTGATTATACGTTGCTGGACACTGCTTTGGACAAAGGAC
TCGTTTAACTGGAAATACTTTGATACTGATATTACTCGTTGCTGCGCTGG
ACACTGCTTTGTACTAAGGACTCGTTTAACTGGAAATACTCTGATACTGA
TATTACTCGTTGCTGGACACTGCTTTGGACTAAGGACTCGTTTAACTGGA
AATACTCTGATACTGATATTACTCGTTGCTGGACACTGCTTTGGACTAAG
GACTCGTTTAACTGGAAATACTCTGATACTGATTATTGTACGCTGTTGCT
GGACACTGCTTTGGACTAAGGACTCGTTTAACTGGAAATACTCTGATACT
GATATTACTCGTTGCTGGACACTGCTTTGGACTAAGGACTCGTTTAACTG
GAAATACTCTGATACTGATATTACTCGTTGCTGGACACTGCTTTGGACTA
AGGACTCGTTTAACTGGAAATACTCTGATACTGATATTACTCGTTGCTGG
ACACTGCTTTGGACTAAGGACTCGTTTAACTGGAAATACTCTGATACTGA
TAATACGTTGCTGGACACTGCTTTGGACAAAGGACTCGTTTAACTGGAAA
TACTCTGATACTGATTATTGTACGCTGTTGCTGgaatactttgaattttt
ttgtgtttatttGAAATGGCTGCTTCTTCATCATCTTCAGCACTTTTGTC
ATCCAAAGCTATTGGCAGTAAACGAGGAAAGGGGGCTTGTGATGTTTGTC
ACAAGGAATACACAAACAGAAAGAAACCAAAACTTTGTGGTTGCGGACAT
GAAATCGGTGGTTCTTTTGTCGAGAAATTGAAGAATCCATCATGTCCAGC
AAGTGTAGAGATTTACAATACGCAAACTTCTTCATTTCGGTCGGTTAAAT
TGACTCCAAATGATGACAGAAGCTTTGTTTATGTGCAGCAGGACAATAAA
ATTTGCTATGCAGGTCCTTGCAAGTCATCAAATGaacaatcaaaaatttc
tcaaatgaaATTCACTTGCAAACATATTGAGAAAGATGCAATCAACCCTG
TGTATCAGGTATCATTTTCTGAAGATAAAATCAGATCTTTTACCCCAGAT
ATTTCTTTGGCGGAAGAAATGATTTCTGTCCAAAATTCAACATCACTCGG
ACCCACTGTATCTAAAGTATCTCACAAGTCATATGCTGTCAAGTCAACAG
TGACTACCACTGCAGAAATGGGTTTCAGCCATGTGATGGAAGTCACAAAT
AAACGTACCAAAGATTCACATTTGAAGTGTTTGGTAAATGAATGCAAAAG
GCCAAAAAAGAAGTCTAATCATACAAAGACAGTTAGTGGAAAGAAGGTAT
GCGTGCATCTTCATTTAGTCATTCTTGCCAGACAAATTTGTGAAGGAATT
TATGATGCCAAAGTTGAAGAAACAGACCATGACAAGAAAGAagtggaaaa
tgaaaataaaactgGTGCATCTGAAACACCACACTATGACAGCACTgtca
aaaaattgatgtcaaACACAATTCCTTACAATATTCCACCAAATGTTGTT
CGTTTAAGTGACCAGATGGTTGTTCCAGAACAAGAAAGACTTGTATTTGA
ATCTAAGGAGAGCGTTTGTTCCCTTTGCCAAGGTCAACTTAGTGAATCC Run BLAST on NCBI protein sequence of TCONS_00038529-protein >TCONS_00038529-protein ID=TCONS_00038529-protein|Name=TCONS_00038529-protein|organism=Clytia hemisphaerica|type=polypeptide|length=328bp
MAASSSSSALLSSKAIGSKRGKGACDVCHKEYTNRKKPKLCGCGHEIGGS
FVEKLKNPSCPASVEIYNTQTSSFRSVKLTPNDDRSFVYVQQDNKICYAG
PCKSSNEQSKISQMKFTCKHIEKDAINPVYQVSFSEDKIRSFTPDISLAE
EMISVQNSTSLGPTVSKVSHKSYAVKSTVTTTAEMGFSHVMEVTNKRTKD
SHLKCLVNECKRPKKKSNHTKTVSGKKVCVHLHLVILARQICEGIYDAKV
EETDHDKKEVENENKTGASETPHYDSTVKKLMSNTIPYNIPPNVVRLSDQ
MVVPEQERLVFESKESVCSLCQGQLSES Run BLAST on NCBI transcript from alignment at sc0001875:4055..11524+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038529 ID=TCONS_00038529|Name=TCONS_00038529|organism=Clytia hemisphaerica|type=transcript|length=7470bp|location=Sequence derived from alignment at sc0001875:4055..11524+ (Clytia hemisphaerica)
TTTTCGTGTGTATTTTACCGAATAGTCCCGCGCGGCTTTTTCTTTTCTAC
GCGCGGAAAtataaaccaaaaaaaatatgGCTGTATGTCTCCTCGTGTTA
CAATGTATGAAAACAAGGACTCAAATATGAATAGAAGACTCCTAAAAAAA
Tgctttaattatttttatttttcctaataaataaaatatgattgttttaa
aattattatcTGATTTTAAATGGATGTAAATTTCGAAATTATTGTTCTAA
GAAATAAAACAAGTCTCAAAGATTGGTCTGTATTTTATTACCCTTTTGTT
TCCACCGCGAAagccagaaaaacacaaaaacacaagtaaatttttttcaa
catcTCACACGTGCGTTTGTAATATCTTCTAGAAGCCTTATTGAATTTTA
TACTCTATTTACTGATTATACGTTGCTGGACACTGCTTTGGACAAAGGAC
TCGTTTAACTGGAAATACTTTGATACTGATATTACTCGTTGCTGCGCTGG
ACACTGCTTTGTACTAAGGACTCGTTTAACTGGAAATACTCTGATACTGA
TATTACTCGTTGCTGGACACTGCTTTGGACTAAGGACTCGTTTAACTGGA
AATACTCTGATACTGATATTACTCGTTGCTGGACACTGCTTTGGACTAAG
GACTCGTTTAACTGGAAATACTCTGATACTGATTATTGTACGCTGTTGCT
GGACACTGCTTTGGACTAAGGACTCGTTTAACTGGAAATACTCTGATACT
GATATTACTCGTTGCTGGACACTGCTTTGGACTAAGGACTCGTTTAACTG
GAAATACTCTGATACTGATATTACTCGTTGCTGGACACTGCTTTGGACTA
AGGACTCGTTTAACTGGAAATACTCTGATACTGATATTACTCGTTGCTGG
ACACTGCTTTGGACTAAGGACTCGTTTAACTGGAAATACTCTGATACTGA
TAATACGTTGCTGGACACTGCTTTGGACAAAGGACTCGTTTAACTGGAAA
TACTCTGATACTGATTATTGTACGCTGTTGCTGgaatactttgaattttt
ttgtgtttatttGAAATGGCTGCTTCTTCATCATCTTCAGCACTTTTGTC
ATCCAAAGCTATTGGCAGTAAACGAGGAAAGGGGGCTTGTGATGTTTGTC
ACAAGGAATACACAAACAGAAAGAAACCAAAACTTTGTGGTTGCGGACAT
GAAATCGGTGGTTCTTTTGTCGAGAAATTGAAGAATCCATCATGTCCAGC
AAGTGTAGAGATTTACAATACGCAAACTTCTTCATTTCGGTCGGTTAAAT
TGACTCCAAATGATGACAGAAGCTTTGTTTATGTGCAGCAGGACAATAAA
ATTTGCTATGCAGGTCCTTGCAAGTCATCAAATGaacaatcaaaaatttc
tcaaatgaaATTCACTTGCAAACATATTGAGAAAGATGCAATCAACCCTG
TGTATCAGGTATCATTTTCTGAAGATAAAATCAGATCTTTTACCCCAGAT
ATTTCTTTGGCGGAAGAAATGATTTCTGTCCAAAATTCAACATCACTCGG
ACCCACTGTATCTAAAGTATCTCACAAGTCATATGCTGTCAAGTCAACAG
TGACTACCACTGCAGAAATGGGTTTCAGCCATGTGATGGAAGTCACAAAT
AAACGTACCAAAGATTCACATTTGAAGTGTTTGGTAAATGAATGCAAAAG
GCCAAAAAAGAAGTCTAATCATACAAAGACAgtaagtgaaatatttcaaa
atacatgtttttatacacgtttttttttattagaacccagttaatacagt
gaggctggaacctcgatttttgaggattacgattttaccagctttttagc
gatttttgcctcgctgaCCCAAATCTCGccacctctttaccttaaaggaa
gatcgaaattaaagtttttcagcgttccgaaaaaaacgctaagcaaaaat
tttttcatcttcacatgatcgattctaaacaacaaaatacatcttttggt
ctttgggtttgtttctgacctttttccttcaaagaatattgatcactttc
attttccccTCGAGCGtgcgagaaaaaaaagattagctcgcattctcgcg
cgggtgaataaagatgaggcggcaatcttgcactgagggtgctacttagt
ttccgccctattttgtgtccacaatagaatggtccaaatacgggggtatt
ccaaatgataaacgatgtcgttTTGTAGGGTACGAGTAAGTGCTTATTTt
ctaagagatacaaatagtatattgaatattattaacttatttatttaagt
atttttgagcccaaatttaaatatctggttaaatgaaaaacaaatgatag
cagttctgtttttcctcaaacccccgggaaaNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNAACTCCATCGAACAATCtcagttcgattaaaaaaattatc
aaaccTAATTGaacacaaatttgatttttgcgACTGTGGCGGCACTAGTT
TGCTATAATTAGGACTATGAATAATTTAaagctactgaagttgagccctg
TGTGAGACACACATTcaactaccttaagtggataaattttagcgggaTTA
AATTTGGTGAATTTGGTAAATCCAAGCCAAAAACTTTAGAAACAGATCAC
TCTGTAAATTAAATCCcctccaaattaaaaaaaaaagaatattatgtgaa
aaatgactttttagtatattttacaGTAACTTTACCCATTTTTATCATCA
ATCgcccaaattaaatccacgtcAAAATTAATCCACCTAAGGTAGGTTAT
AAGGTAATACTAAATCATGTTGCAAAAAATGATCCCTTTTTGATGAAGAG
AAGTctcttaaaaacatttttctacaTTACACaaagtaaatgttttttct
cacTTAGGTTAGTGGAAAGAAGGTGTGCGTGCATCTTCATTTAGTCATTC
TTGCCAGACAAATTTGTGAAGGAATTTATGATGCCAATGTTGAAGAAACA
GACCATGACAAGAAAGAagtggaaaatgaaaataaaactgGTGCATCTGA
AACACCACACTATGACAGCACTgtcaaaaaattgatgtcaaACACAATTC
CTTACAATATTCCACCAAATGTTGTTCGTTTAAGTGACCAGATGGTTGTT
CCAGAACAAGAAAGACTTGTATTTGAATCTAAGGAGAGCGTTTGTTCCCT
TTGCCAAGGTCAACTTAGTGAATCCATGTATCCACAAGGATGTAATTCNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNAGCTGCTTGTTTTTCCCGACAGGCGGGGGGGGAGCTCTATCTTGGGGG
ACCTGCATTAGTTTATGTAACTCTGGGGGCTAAATAacacttcctaaata
tttttctttactgttggtttttaatttctctaaaccttcatgttttcatg
taaagtgtgatctgatccttaaaatgcaaatatgaagacattctattgca
ttctctaaaagtgcacacacatgtaaatagagctttgtgaatgccataaa
attttccccctatactgggacctaaaattttatcaggctggggggaccta
aatttggcgggggacctagaaccccagtcggagccatgcAATGGAACAAT
CAAACTCCATCGAACAATctaagttcgattaaaaaaattatcaaaccTAA
TTGaacacaaatttgatttttgcgACTGTGGCGGCACTAGTTTGCTATAA
TTAGGACTATGAATAATTTAaagctactgaagttgagccctgTGTGAGAC
ACACATTcaactaccttaagtggataaattttagcgggaTTAAATTTGGT
GAATTTGGTAAATCCAAGCCAAAAACTTTAGAAACAGATCACTCTGTAAA
TTAAATCCcctccaaattaaaaaaaaaagaatattatgtgaaaaatgact
ttttagtatattttacaGTAACTTTACCCATTTTATCATCAATCgcccaa
attaaatccacgtcAAAATTAATCCACCTAAGGTAGGTTATAAGGTAATA
CTAAATCATGTTGCAAAAAATGATCCCTTTTTGATGAAGAGAAGTctctt
aaaaacatttttctacaTTACACANGATCCCTTTTTGATGAAGAGTAGTC
TCTTAAAAACATTTCTCTACATTACACaaagtaaatgttttttctcacTT
AGGTTAGTGGAAAGAAGGTATGCGTGCATCTTCATTTAGTCATTCTTGCC
AGACAAATTTGTGAAGGAATTTATGATGCCAAAGTTGAAGAAACAGACCA
TGACAAGAAAGAagtggaaaatgaaaataaaactgGTGCATCTGAAACAC
CACACTATGACAGCACTgtcaaaaaattgatgtcaaACACAATTCCTTAC
AATATTCCACCAAATGTTGTTCGTTTAAGTGACCAGATGGTTGTTCCAGA
ACAAGAAAGACTTGTATTTGAATCTAAGGAGAGCGTTTGTTCCCTTTGCC
AAGGTCAACTTAGTGAATCC Coding sequence (CDS) from alignment at sc0001875:4055..11524+ >TCONS_00038529 ID=TCONS_00038529|Name=TCONS_00038529|organism=Clytia hemisphaerica|type=CDS|length=1968bp|location=Sequence derived from alignment at sc0001875:4055..11524+ (Clytia hemisphaerica)
ATGGCTGCTTCTTCATCATCTTCAGCACTTTTGTCATCCAAAGCTATTGG
CAGTAAACGAGGAAAGGGGGCTTGTGATGTTTGTCACAAGGAATACACAA
ACAGAAAGAAACCAAAACTTTGTGGTTGCGGACATGAAATCGGTGGTTCT
TTTGTCGAGAAATTGAAGAATCCATCATGTCCAGCAAGTGTAGAGATTTA
CAATACGCAAACTTCTTCATTTCGGTCGGTTAAATTGACTCCAAATGATG
ACAGAAGCTTTGTTTATGTGCAGCAGGACAATAAAATTTGCTATGCAGGT
CCTTGCAAGTCATCAAATGaacaatcaaaaatttctcaaatgaaATTCAC
TTGCAAACATATTGAGAAAGATGCAATCAACCCTGTGTATCAGGTATCAT
TTTCTGAAGATAAAATCAGATCTTTTACCCCAGATATTTCTTTGGCGGAA
GAAATGATTTCTGTCCAAAATTCAACATCACTCGGACCCACTGTATCTAA
AGTATCTCACAAGTCATATGCTGTCAAGTCAACAGTGACTACCACTGCAG
AAATGGGTTTCAGCCATGTGATGGAAGTCACAAATAAACGTACCAAAGAT
TCACATTTGAAGTGTTTGGTAAATGAATGCAAAAGGCCAAAAAAGAAGTC
TAATCATACAAAGACAGTTAGTGGAAAGAAGGTATGCGTGCATCTTCATT
TAGTCATTCTTGCCAGACAAATTTGTGAAGGAATTTATGATGCCAAAGTT
GAAGAAACAGACCATGACAAGAAAGAagtggaaaatgaaaataaaactgG
TGCATCTGAAACACCACACTATGACAGCACTgtcaaaaaattgatgtcaa
ACACAATTCCTTACAATATTCCACCAAATGTTGTTCGTTTAAGTGACCAG
ATGGTTGTTCCAGAACAAGAAAGACTTGTATTTGAATCTAAGGAGAGCGT
TTGTTCCCTTTGCCAAGGTCAACTTAGTGAATCCATGGCTGCTTCTTCAT
CATCTTCAGCACTTTTGTCATCCAAAGCTATTGGCAGTAAACGAGGAAAG
GGGGCTTGTGATGTTTGTCACAAGGAATACACAAACAGAAAGAAACCAAA
ACTTTGTGGTTGCGGACATGAAATCGGTGGTTCTTTTGTCGAGAAATTGA
AGAATCCATCATGTCCAGCAAGTGTAGAGATTTACAATACGCAAACTTCT
TCATTTCGGTCGGTTAAATTGACTCCAAATGATGACAGAAGCTTTGTTTA
TGTGCAGCAGGACAATAAAATTTGCTATGCAGGTCCTTGCAAGTCATCAA
ATGaacaatcaaaaatttctcaaatgaaATTCACTTGCAAACATATTGAG
AAAGATGCAATCAACCCTGTGTATCAGGTATCATTTTCTGAAGATAAAAT
CAGATCTTTTACCCCAGATATTTCTTTGGCGGAAGAAATGATTTCTGTCC
AAAATTCAACATCACTCGGACCCACTGTATCTAAAGTATCTCACAAGTCA
TATGCTGTCAAGTCAACAGTGACTACCACTGCAGAAATGGGTTTCAGCCA
TGTGATGGAAGTCACAAATAAACGTACCAAAGATTCACATTTGAAGTGTT
TGGTAAATGAATGCAAAAGGCCAAAAAAGAAGTCTAATCATACAAAGACA
GTTAGTGGAAAGAAGGTATGCGTGCATCTTCATTTAGTCATTCTTGCCAG
ACAAATTTGTGAAGGAATTTATGATGCCAAAGTTGAAGAAACAGACCATG
ACAAGAAAGAagtggaaaatgaaaataaaactgGTGCATCTGAAACACCA
CACTATGACAGCACTgtcaaaaaattgatgtcaaACACAATTCCTTACAA
TATTCCACCAAATGTTGTTCGTTTAAGTGACCAGATGGTTGTTCCAGAAC
AAGAAAGACTTGTATTTGAATCTAAGGAGAGCGTTTGTTCCCTTTGCCAA
GGTCAACTTAGTGAATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038529-exon-sc0001875-1491911889:4055..5785 | TCONS_00038529-exon-sc0001875-1491911889:4055..5785 | Clytia hemisphaerica | exon |
| TCONS_00038529-exon-sc0001875-1510915933:4055..5785 | TCONS_00038529-exon-sc0001875-1510915933:4055..5785 | Clytia hemisphaerica | exon |
| TCONS_00038529-exon-sc0001875-1575043694:4055..5785 | TCONS_00038529-exon-sc0001875-1575043694:4055..5785 | Clytia hemisphaerica | exon |
| TCONS_00038529-exon-sc0001875-1491911889:11207..11524 | TCONS_00038529-exon-sc0001875-1491911889:11207..11524 | Clytia hemisphaerica | exon |
| TCONS_00038529-exon-sc0001875-1510915933:11207..11524 | TCONS_00038529-exon-sc0001875-1510915933:11207..11524 | Clytia hemisphaerica | exon |
| TCONS_00038529-exon-sc0001875-1575043694:11207..11524 | TCONS_00038529-exon-sc0001875-1575043694:11207..11524 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001875 | supercontig | sc0001875:4055..11524 + |
Blast
The following BLAST results are available for this feature:
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