TCONS_00038386 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038386
Unique NameTCONS_00038386
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1974

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038386 ID=TCONS_00038386|Name=TCONS_00038386|organism=Clytia hemisphaerica|type=transcript|length=1974bp
TCTTTCCATTGAATTCTGGTGCTTTTTTACCTTTTCTATATTTAGAAGAA
GAGTTATGAAAATGGCTTATGAGGATTGCTATGCATGGTAGAATTCTGAC
CgcttttgaaaatattggctGGAAAAGGATTCTGACCGCTTTATTTGGGA
AACTCTGCATATGTAAAATTCTTTATTgccattttatattttctttaaaa
ttttggcaaaataaaaagttttttcatagcAAAATAGTAATCATCAAATT
CAGGATAGGAGAAAAGAAACGACTCCCTTGTAATATTACAATATTTCTAC
TAAACAGATAAGTTGGAAGTGAAGaaagtttcaagaaaaacaaatatttg
tGGTATGAGTGGTTTTCTCTTTAAAATCTTTAAGCTTTCATATAATGTAA
TGTAATCCTTTTAGAATCCTTGAGTTAATCCATTTCTTGTAATAATTATA
TTCCAGCtactaaaaaagaaagaaaaacaaaaaggaaaactGGAATAAAT
CACCATTCGACTGAAATAAcaaaaaagagaaaagaagaaaagaaagctga
agaaaatagctttcacactaaaacaaaacaagtaaacaaactttCACCGC
ACATTTCGATAATTCATTAGGGTAAATTACCAAAAGGTTAATACGATAGA
TCTAACTAAAGaactttcttaaaaattgaaaaaatttatttcgtggTTCA
ATCTACGAAGTTTTTCcatactttttgataaaaggtaTATATTTGCTTGT
CACAGTTTTTCTTTGACACTCTATATTTTTTACTGAACAACCGATCCCTT
TCCGATAAGATATCCCTCGTCCGTTATATTTGTTGATTGTTTGTTTTAGA
CTGCTGCAAAGACTTTTGTCTGAAACCAGTTAAACCGATATACTCCCAAA
CGTTTACTTGTGACAAGTGCCTCAAGACTTTTCATAGTAAATGTGTGGAG
CTTGGGACGTCACAACCCCGATCATGTGGATGTCACTTAATCACACCTCT
GATCGTAGAGCATAAACGGCTATCTTGGTTGGAAGATCTCGCTGAGTTTA
AAAAGAGATATTTAAGAACTCACCTTGAAAGCATAAAACACATAATATTG
CAACGTAATGATGGATATCATGAGTCCCTGTCCTTGAGCATATTACCATT
GTTTAAACCATATATTATTGACTATGTAGAAGGTTCATTAAAGGAAGTGC
TACCCGATGCAGATGCCAAATtaataaaagattttttccttcCAGAGCTG
ATGGTTCGCACGATATCAAAAGAGTGCAATTGTCCGGTGTTGGCTATTCG
AAGGCTGCTACTGGAGAAGAATTCTGAGACTtgatacactctttttttat
aagaataatataGATTTAGGATAAAGTATTCTAAAGAATTTGACAAAATC
CAAGGTGAACTATGCTTAACGTATTCAAAAGCTCAGGCATTTATGTTCTT
GTAGAagctattcttataaaattagcGTGTAACATGATAAAGAAATATAC
TGTAGCCTATACCTTTAAGGTTATTTTTGATACTCAGTAATGCATTTGGC
CCATTTACAATTTTACTCATTCTTGCTTCACTCAAACTGTTACTAACATC
ACCAATCTGCCTGTCTTGAAAAATTAAGTCAAAGTATTATATATATTCTA
AATGGTAACATGATTTTATAAATTTAGACTGCAACTGTCCATACGACTAC
GACTGTTCTATTGTTATATAGAGTGTTCGATTTCccgttcttttattttt
ctataatcctaaaatatagaaataattaTAATTATGACAAATAATTATTA
TAGATAATGTATATATAgatgtaaaagattttaatatGTTATATTAGATT
CGTGTTGAGTGAAGAAATGTGTGTATTTTCGCCATGTTAAACTTAAAAGT
AGTTTAAAGTATCTCTACTCTATTATTTATTGTTCCATTGACATAAATAT
GGATATTTTCGCGTTGATTGTCAG
Run BLAST on NCBI

transcript from alignment at sc0001839:7955..11644+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038386 ID=TCONS_00038386|Name=TCONS_00038386|organism=Clytia hemisphaerica|type=transcript|length=3690bp|location=Sequence derived from alignment at sc0001839:7955..11644+ (Clytia hemisphaerica)
TCTTTCCATTGAATTCTGGTGCTTTTTTACCTTTTCTATATTTAGAAGAA
GAGTTATGAAAATGGCTTATGAGGATTGCTATGCATGGTAGAATTCTGAC
CgcttttgaaaatattggctGGAAAAGGATTCTGACCGCTTTATTTGGGA
AACTCTGCATATGTAAAATTCTTTATTgccattttatattttctttaaaa
ttttggcaaaataaaaagttttttcatagcAAAATAGTAATCATCAAATT
CAGGATAGGAGAAAAGAAACGACTCCCTTGTAATATTACAATATTTCTAC
TAAACAGATAAGTTGGAAGTGAAGaaagtttcaagaaaaacaaatatttg
tGGTATGAGTGGTTTTCTCTTTAAAATCTTTAAGCTTTCATATAATGTAA
TGTAATCCTTTTAGAATCCTTGAGTTAATCCATTTCTTGTAATAATTATA
TTCCAGCtactaaaaaagaaagaaaaacaaaaaggaaaactGGAATAAAT
CACCATTCGACTGAAATAAGTAAATATGATTTATCGCAGAAAATGTTATC
AGCAATTCACTGGAATAAGAATAAATTCCTTGTTATAGTGAcagaaattc
aaaataatttctataatttGTAGAGATAATTTGTACTTGCTCTGGAAACG
TTAATAGGATGGGAAGTAGATTATCAAAGCTGGCAAGTAACAGATTTACA
TTTTGTAACTTCTCGTTGACAAACTGTAATCAAAACAATATTTGAATcct
attttagcaaaaaagagaaaagaagaaaagaaagctgaagaaaatagctt
tcacactaaaacaaaacaagtaaacaaactttCACCGCACATTTCGATAA
TTCATTAGGGTAAATTACCAAAAGGTTAATACGATAGATCTAACTAAAGa
actttcttaaaaattgaaaaaatttatttcgtggTTCAATCTACGAAGTT
TTTCcatactttttgataaaaggtaTATATTTGCTTGTCACAGTTTTTCT
TTGACACTCTATATTTTTTACTGAACAACCGATCCCTTTCCGATAAGATA
TCCCTCGTCCGTTATATTTGTTGATTGTTTGTTTTAGACTGCTGCAAAGA
CTTTTGTCTGAAACCAGTTAAACCGATATACTCCCAAACGTTTACTTGTG
ACAAGTGCCTCAAGACTTTTCATAGTAAATGTGTGGAGCTTGGGACGTCA
CAACCCCGATCATGTGGATGTCACTTAATCACACCTCTGATCGTAGAGCA
TAAACGGTAATTGTGTACCTCTGAGGCTTTTAAAAAGAAAAGGTTCCTGA
GACtttaattataattttaatttcataTACGTGTTTATTTATGGTCAATC
TTATAAATTTGACAACGGGATATCTCCTCTCATAGTAAGGGCTATCATTA
GACTGAGAGGGAAAGATTTCCTAAGGTCTCATCTCACAGCTGCATTTCct
gaaaaagattttacaagAGCGATAAGggtaaatttgtaaaaattttctgC
AAGGAAACTCAAATCAAGTCTCTGGTGTGACTATACCATCGCGttttttt
ctgataaaaaagCCCTGGTACCGAAAGGTGGAGGGGGGTTTACAAGGggt
taaatgaaaatctctctCAAAGTAGAAGAGGATAATTTTTATTGGATCGC
CCTAAAGCTGGGAGACTATTaagaatgaaaaattgaaaagtcatcatttt
aaaaagctaaaatttaaattttatttgctgcAGTTGTATAACGAAAGTTT
TGTGTTGATTTCAAACAGGCTATCTTGGTTGGAAGATCTCGCTGAGTTTA
AAAAGAGATATTTAAGAACTCACCTTGAAAGCATAAAACACATAGTAagt
tactaaagtctgtctcaatataaatatataaattgaATATTGTACTTCTA
GGAAAGAAATGAGAATTATCATTGTTGTTGCTTTAGATATCTGGCTGGTT
GACTTTCGTTTTTCTGAGTCAACCAGTGATCAACTGTGAGCTGTATTATT
TTTGACTGaataagtttttttgaaaatggtgtTAGTGATAATggtcaaag
tttgaaaattcataaaaatggtGATAATAGCACAATAGTAGAAGATTTCA
AACAAATTTCACTTGATAATATTCTACTCGCAAATACCTTTTTAACGGTC
AAAAAATCGCATTCTCATTCAAACAAATTCAATAGTTACAGCCATTCTTA
TATCTGGAAAGACTTTAGTAAAAGTATGTTTTGAATCCATTTCTAGATAT
TGCAACGTAATGATGGATATCATGAGTCCCTGTCCTTGAGCATATTACCA
TTGTTTAAACCATATATTGTAAGTATCAGGAAAAGACTATTTAATGCTTT
TTTGCTTCTTGACAAACTGTTCCAAGGCACATCGAATGTTTTGGAAAGAT
TTCGAATAAAATAGACAGAATAGTTACATTCAATTTTCTATAATCTACAT
AACTGTTTTTCTTTACTTCAGGGTTTTTAATCCTGCTAAAAGTTCTGAGA
AACCCTGAAATATTTCGATTATGTTTAATCACATCCACTTTGCTtgattt
atttctaaattttcgtatttttaaCTCGATTTCGAACTCTTGGAACCTTT
ATCATAGCTGTGTATCTTTGTATTTTCAGATTGACTATGTAGAAGGTTCA
TTAAAGGAAGTGCTACCCGATGCAGATGCCAAATtaataaaagatttttt
ccttcCAGAGGTAAAGCAATACTTCAAGTTTTTCTTCACCTTTTATTTAA
AACTTACAAGAAATAGTttgggtctgaaaactttttgtagaaataatgAG
GAAATTGTAAATTAATCTAGACAATTTTCGAGACAACtccaaagattttt
taaattgtcgatTTTACCTAAAGAAAATTCCAGTAAATTCTTcgggaaaa
aatgttttgaaataccCTACAACAGTTTACCACTCCACTGAGACTTATGC
TTTTTACATTTAGCTGATGGTTCGCACGATATCAAAAGAGTGCAATTGTC
CGGTGTTGGCTATTCGAAGGCTGCTACTGGAGAAGAATTCTGAGACTtga
tacactctttttttataagaataatataGATTTAGGATAAAGTATTCTAA
AGAATTTGACAAAATCCAAGGTGAACTATGCTTAACGTATTCAAAAGCTC
AGGCATTTATGTTCTTGTAGAagctattcttataaaattagcGTGTAACA
TGATAAAGAAATATACTGTAGCCTATACCTTTAAGGTTATTTTTGATACT
CAGTAATGCATTTGGCCCATTTACAATTTTACTCATTCTTGCTTCACTCA
AACTGTTACTAACATCACCAATCTGCCTGTCTTGAAAAATTAAGTCAAAG
TATTATATATATTCTAAATGGTAACATGATTTTATAAATTTAGACTGCAA
CTGTCCATACGACTACGACTGTTCTATTGTTATATAGAGTGTTCGATTTC
ccgttcttttatttttctataatcctaaaatatagaaataattaTAATTA
TGACAAATAATTATTATAGATAATGTATATATAgatgtaaaagattttaa
tatGTTATATTAGATTCGTGTTGAGTGAAGAAATGTGTGTATTTTCGCCA
TGTTAAACTTAAAAGTAGTTTAAAGTATCTCTACTCTATTATTTATTGTT
CCATTGACATAAATATGGATATTTTCGCGTTGATTGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022983XLOC_022983Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038386-exon-sc0001839-1491911889:7955..8473TCONS_00038386-exon-sc0001839-1491911889:7955..8473Clytia hemisphaericaexon
TCONS_00038386-exon-sc0001839-1510915933:7955..8473TCONS_00038386-exon-sc0001839-1510915933:7955..8473Clytia hemisphaericaexon
TCONS_00038386-exon-sc0001839-1575043694:7955..8473TCONS_00038386-exon-sc0001839-1575043694:7955..8473Clytia hemisphaericaexon
TCONS_00038386-exon-sc0001839-1491911889:8712..9210TCONS_00038386-exon-sc0001839-1491911889:8712..9210Clytia hemisphaericaexon
TCONS_00038386-exon-sc0001839-1510915933:8712..9210TCONS_00038386-exon-sc0001839-1510915933:8712..9210Clytia hemisphaericaexon
TCONS_00038386-exon-sc0001839-1575043694:8712..9210TCONS_00038386-exon-sc0001839-1575043694:8712..9210Clytia hemisphaericaexon
TCONS_00038386-exon-sc0001839-1491911889:9723..9798TCONS_00038386-exon-sc0001839-1491911889:9723..9798Clytia hemisphaericaexon
TCONS_00038386-exon-sc0001839-1510915933:9723..9798TCONS_00038386-exon-sc0001839-1510915933:9723..9798Clytia hemisphaericaexon
TCONS_00038386-exon-sc0001839-1575043694:9723..9798TCONS_00038386-exon-sc0001839-1575043694:9723..9798Clytia hemisphaericaexon
TCONS_00038386-exon-sc0001839-1491911889:10201..10272TCONS_00038386-exon-sc0001839-1491911889:10201..10272Clytia hemisphaericaexon
TCONS_00038386-exon-sc0001839-1510915933:10201..10272TCONS_00038386-exon-sc0001839-1510915933:10201..10272Clytia hemisphaericaexon
TCONS_00038386-exon-sc0001839-1575043694:10201..10272TCONS_00038386-exon-sc0001839-1575043694:10201..10272Clytia hemisphaericaexon
TCONS_00038386-exon-sc0001839-1491911889:10584..10664TCONS_00038386-exon-sc0001839-1491911889:10584..10664Clytia hemisphaericaexon
TCONS_00038386-exon-sc0001839-1510915933:10584..10664TCONS_00038386-exon-sc0001839-1510915933:10584..10664Clytia hemisphaericaexon
TCONS_00038386-exon-sc0001839-1575043694:10584..10664TCONS_00038386-exon-sc0001839-1575043694:10584..10664Clytia hemisphaericaexon
TCONS_00038386-exon-sc0001839-1491911889:10918..11644TCONS_00038386-exon-sc0001839-1491911889:10918..11644Clytia hemisphaericaexon
TCONS_00038386-exon-sc0001839-1510915933:10918..11644TCONS_00038386-exon-sc0001839-1510915933:10918..11644Clytia hemisphaericaexon
TCONS_00038386-exon-sc0001839-1575043694:10918..11644TCONS_00038386-exon-sc0001839-1575043694:10918..11644Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001839supercontigsc0001839:7955..11644 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.495899	0.422029	0.107793	0.146475	0.835455	0.275006	0	0.356028	1.73474	1.43548	2.66514	1.55949	1.50257	2.91315	1.8718	1.95752	0.878056	2.48358	2.60779	1.42839	1.56375	1.05221	1.51139	2.95743	0.438861	0.54604	6.21889	5.30204	1.02816	1.40531
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038386 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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