TCONS_00038381 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038381
Unique NameTCONS_00038381
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1821

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038381 ID=TCONS_00038381|Name=TCONS_00038381|organism=Clytia hemisphaerica|type=transcript|length=1821bp
TATGTTATTCACGTAATCACAGCAATGTAAAAACTTGTTTACTTCAACAC
AACAATATAATATCGAACTATTTGCCTTATTACTTATTCGCACtgatgaa
aatttagagaatgATTTATTCCTTAACCATAtctttattaccaaaataat
tttctatatAATAGCTAAGGACACCATGTAATGACCTGATTTACTTTGAA
AGCCTGCTCAAATAGTATTCTTTTCTAATTCAACATTATGTTTTCACCAA
ATTTATCcaacaatcaagcaaaaattatTAGGAAAAATCTATGCCCAGCG
TAGGAAGAaacttaaaaatatcaaaaccaaaCAACTGGAAACATACATAA
AGGTTAAATATTAGGAATTGATAGATCATGTCAACCAAACGTAGAGGAAG
CAATGGGCTTGATTGGAATAAAACTGTAAAATTGATTGAATCCAAAAAGG
ATCGTAATCGCAGAAACCGAGATTACATAGAACAAGTAAAAACGAAGGCT
CATGAATGGAATGTTTATTGCAAAACTACAGTTGGATTTGTTGCAATTTA
TGAGGAAAAAATACATTATAGTGgtAATAATCAGTCAATGGTAAATTTTC
TAAATGACGAACGAGTGCTGACGATTCTAAAGGAATATTGTACATTCACA
GATAAGTTGGAAGTGAAGaaagtttcaagaaaaacaaatatttgtGACTG
CTGCAAAGACTTTTGTCTGAAACCAGTTAAACCGATATACTCCCAAACGT
TTACTTGTGACAAGTGCCTCAAGACTTTTCATAGTAAATGTGTGGAGCTT
GGGACGTCACAACCCCGATCATGTGGATGTCACTTAATCACACCTCTGAT
CGTAGAGCATAAACGGCTATCTTGGTTGGAAGATCTCGCTGAGTTTAAAA
AGAGATATTTAAGAACTCACCTTGAAAGCATAAAACACATAATATTGCAA
CGTAATGATGGATATCATGAGTCCCTGTCCTTGAGCATATTACCATTGTT
TAAACCATATATTATTGACTATGTAGAAGGTTCATTAAAGGAAGTGCTAC
CCGATGCAGATGCCAAATtaataaaagattttttccttcCAGAGCTGATG
GTTCGCACGATATCAAAAGAGTGCAATTGTCCGGTGTTGGCTATTCGAAG
GCTGCTACTGGAGAAGAATTCTGAGACTtgatacactctttttttataag
aataatataGATTTAGGATAAAGTATTCTAAAGAATTTGACAAAATCCAA
GGTGAACTATGCTTAACGTATTCAAAAGCTCAGGCATTTATGTTCTTGTA
GAagctattcttataaaattagcGTGTAACATGATAAAGAAATATACTGT
AGCCTATACCTTTAAGGTTATTTTTGATACTCAGTAATGCATTTGGCCCA
TTTACAATTTTACTCATTCTTGCTTCACTCAAACTGTTACTAACATCACC
AATCTGCCTGTCTTGAAAAATTAAGTCAAAGTATTATATATATTCTAAAT
GGTAACATGATTTTATAAATTTAGACTGCAACTGTCCATACGACTACGAC
TGTTCTATTGTTATATAGAGTGTTCGATTTCccgttcttttatttttcta
taatcctaaaatatagaaataattaTAATTATGACAAATAATTATTATAG
ATAATGTATATATAgatgtaaaagattttaatatGTTATATTAGATTCGT
GTTGAGTGAAGAAATGTGTGTATTTTCGCCATGTTAAACTTAAAAGTAGT
TTAAAGTATCTCTACTCTATTATTTATTGTTCCATTGACATAAATATGGA
TATTTTCGCGTTGATTGTCAG
Run BLAST on NCBI

transcript from alignment at sc0001839:5938..11644+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038381 ID=TCONS_00038381|Name=TCONS_00038381|organism=Clytia hemisphaerica|type=transcript|length=5707bp|location=Sequence derived from alignment at sc0001839:5938..11644+ (Clytia hemisphaerica)
TATGTTATTCACGTAATCACAGCAATGTAAAAACTTGTTTACTTCAACAC
AACAATATAATATCGAACTATTTGCCTTATTACTTATTCGCACtgatgaa
aatttagagaatgATTTATTCCTTAACCATAtctttattaccaaaataat
tttctatatAATAGCTAAGGACACCATGTAATGACCTGATTTACTTTGAA
AGCCTGCTCAAATAGTATTCTTTTCTAATTCAACATTATGTTTTCACCAA
ATTTATCcaacaatcaagcaaaaattatTAGGAAAAATCTATGCCCAGCG
TAGGAAGAaacttaaaaatatcaaaaccaaaCAACTGGTAAGTCAAATCA
TTTTcgacatttttaaaaagttgggAAAATGGTAATCGTCAATGCTTCAT
CAGTGTTTATTATTTCGCAGTATAACATtaacaaagaaatgaaaaattat
gcGATGCTTTGCTTACCTTGATTTTTATTCACTTAAATTTAACTAGCTAT
AGCTACTTAGTGTGTCCTTTTAATCAAAAGCAACCATTCGATAGTCAACA
TTCAACCAATTGATAGTCAATAATCAATCAATGATTTGTCGAAAATCAAG
TACTTCTTTTCTTTAATGACCACAAAATACATACAAATCAGAAAGTTTAT
ACATCATATTTAATAAGTCATATTAATTTCGTTTTCAATCTTTTAAAATC
GTACCGTGATGGCACGTTCTGACACAATCATAATAATTAGATATTCTTGC
TGATTAATCTTTTTAACCTTCTAAAAGGAGTCAGTCATAAGGTATTTGGT
TATATTTTGTAACATTGATCGGTTTcatttctcttttcttgttaaagGAA
ACATACATAAAGGTTAAATATTAGGAATTGATAGATCATGTCAACCAAAC
GTAGAGGAAGCAATGGGCTTGATTGGAATAAAACTGTAAGTCCATAATTA
TATTGAACTTTaactaaattatttttgtttcatcAGAAATTTCAGGCTGA
TTTTGGATTCTTACAAGATTGTTAGAGTATTTTTTATGGTTCTATTACTG
TTTTCCTATTTCACTGCCTTGAATTGCAGTGTtgtgttttaaataattta
aaatagaaTCTCAGCAAATATATTTCATGCCAATTAACGAATTTGGATTG
TATTTACTGGACAGCGGCCGATTTTTTAGGGACGCTGAAAGACGGGGCAC
CAAAAGGCGTctgtgatttctaattttggcgccccttatCTTAAAATTAG
CAGTTTTCACTggttttcagccaaaaagaaggaaaatatccaaaaattgt
aGTGTTTTGGCCATTTTATTCTTTTCAGGTAAAATTGATTGAATCCAAAA
AGGATCGTAATCGCAGAAACCGAGATTACATAGAACAAGTAAAAACGAAG
GTAAAAATGACGACAGCTTCAGTGACTCACTACTCAGAAGTTTTTTAGAA
GGCATAGtttcatttattttaaaaatttgtgttACTTACCGAATTTTCTT
ACTCAGAAAAAAAGTACTCGTGTGGTTGTGGAGAAATTTTCCTAACCTTC
TTTGATTTAAATTTATGTTAACTATTTTCGTCAGGCTCATGAATGGAATG
TTTATTGCAAAACTACAGTTGGATTTGTTGCAATTTATGAGGAAAAAATA
CATTATAGTGGTAGGATTCAAACTCTTAACTTTTTACCGACTTGCTTAAA
TGGTTTGTGGACCGTGTCGTAAAATATTGCCTTTGTCAATCATCCGGCGT
TTCATAAAAGAAAACAGCAAAATTGTTCTACAACTTAAAGTTAAAACCTG
ACGGCAGATTGGGGGGGGGCAGACGTCACCTCCTCTCGTTACATTAGCAT
TATCAAAATATGATTATAATTGTTTTATTTGAGCCAAGAatccatttttc
atttcaaaggtAATAATCAGTCAATGGTAAATTTTCTAAATGACGAACGA
GTGCTGACGATTCTAAAGGAATATTGTACATTCACAGGTATTGTATTTGA
TCACTCTTGGTTATTTTTCTTTCCATTGAATTCTGGTGCTTTTTTACCTT
TTCTATATTTAGAAGAAGAGTTATGAAAATGGCTTATGAGGATTGCTATG
CATGGTAGAATTCTGACCgcttttgaaaatattggctGGAAAAGGATTCT
GACCGCTTTATTTGGGAAACTCTGCATATGTAAAATTCTTTATTgccatt
ttatattttctttaaaattttggcaaaataaaaagttttttcatagcAAA
ATAGTAATCATCAAATTCAGGATAGGAGAAAAGAAACGACTCCCTTGTAA
TATTACAATATTTCTACTAAACAGATAAGTTGGAAGTGAAGaaagtttca
agaaaaacaaatatttgtGGTATGAGTGGTTTTCTCTTTAAAATCTTTAA
GCTTTCATATAATGTAATGTAATCCTTTTAGAATCCTTGAGTTAATCCAT
TTCTTGTAATAATTATATTCCAGCtactaaaaaagaaagaaaaacaaaaa
ggaaaactGGAATAAATCACCATTCGACTGAAATAAGTAAATATGATTTA
TCGCAGAAAATGTTATCAGCAATTCACTGGAATAAGAATAAATTCCTTGT
TATAGTGAcagaaattcaaaataatttctataatttGTAGAGATAATTTG
TACTTGCTCTGGAAACGTTAATAGGATGGGAAGTAGATTATCAAAGCTGG
CAAGTAACAGATTTACATTTTGTAACTTCTCGTTGACAAACTGTAATCAA
AACAATATTTGAATcctattttagcaaaaaagagaaaagaagaaaagaaa
gctgaagaaaatagctttcacactaaaacaaaacaagtaaacaaactttC
ACCGCACATTTCGATAATTCATTAGGGTAAATTACCAAAAGGTTAATACG
ATAGATCTAACTAAAGaactttcttaaaaattgaaaaaatttatttcgtg
gTTCAATCTACGAAGTTTTTCcatactttttgataaaaggtaTATATTTG
CTTGTCACAGTTTTTCTTTGACACTCTATATTTTTTACTGAACAACCGAT
CCCTTTCCGATAAGATATCCCTCGTCCGTTATATTTGTTGATTGTTTGTT
TTAGACTGCTGCAAAGACTTTTGTCTGAAACCAGTTAAACCGATATACTC
CCAAACGTTTACTTGTGACAAGTGCCTCAAGACTTTTCATAGTAAATGTG
TGGAGCTTGGGACGTCACAACCCCGATCATGTGGATGTCACTTAATCACA
CCTCTGATCGTAGAGCATAAACGGTAATTGTGTACCTCTGAGGCTTTTAA
AAAGAAAAGGTTCCTGAGACtttaattataattttaatttcataTACGTG
TTTATTTATGGTCAATCTTATAAATTTGACAACGGGATATCTCCTCTCAT
AGTAAGGGCTATCATTAGACTGAGAGGGAAAGATTTCCTAAGGTCTCATC
TCACAGCTGCATTTCctgaaaaagattttacaagAGCGATAAGggtaaat
ttgtaaaaattttctgCAAGGAAACTCAAATCAAGTCTCTGGTGTGACTA
TACCATCGCGtttttttctgataaaaaagCCCTGGTACCGAAAGGTGGAG
GGGGGTTTACAAGGggttaaatgaaaatctctctCAAAGTAGAAGAGGAT
AATTTTTATTGGATCGCCCTAAAGCTGGGAGACTATTaagaatgaaaaat
tgaaaagtcatcattttaaaaagctaaaatttaaattttatttgctgcAG
TTGTATAACGAAAGTTTTGTGTTGATTTCAAACAGGCTATCTTGGTTGGA
AGATCTCGCTGAGTTTAAAAAGAGATATTTAAGAACTCACCTTGAAAGCA
TAAAACACATAGTAagttactaaagtctgtctcaatataaatatataaat
tgaATATTGTACTTCTAGGAAAGAAATGAGAATTATCATTGTTGTTGCTT
TAGATATCTGGCTGGTTGACTTTCGTTTTTCTGAGTCAACCAGTGATCAA
CTGTGAGCTGTATTATTTTTGACTGaataagtttttttgaaaatggtgtT
AGTGATAATggtcaaagtttgaaaattcataaaaatggtGATAATAGCAC
AATAGTAGAAGATTTCAAACAAATTTCACTTGATAATATTCTACTCGCAA
ATACCTTTTTAACGGTCAAAAAATCGCATTCTCATTCAAACAAATTCAAT
AGTTACAGCCATTCTTATATCTGGAAAGACTTTAGTAAAAGTATGTTTTG
AATCCATTTCTAGATATTGCAACGTAATGATGGATATCATGAGTCCCTGT
CCTTGAGCATATTACCATTGTTTAAACCATATATTGTAAGTATCAGGAAA
AGACTATTTAATGCTTTTTTGCTTCTTGACAAACTGTTCCAAGGCACATC
GAATGTTTTGGAAAGATTTCGAATAAAATAGACAGAATAGTTACATTCAA
TTTTCTATAATCTACATAACTGTTTTTCTTTACTTCAGGGTTTTTAATCC
TGCTAAAAGTTCTGAGAAACCCTGAAATATTTCGATTATGTTTAATCACA
TCCACTTTGCTtgatttatttctaaattttcgtatttttaaCTCGATTTC
GAACTCTTGGAACCTTTATCATAGCTGTGTATCTTTGTATTTTCAGATTG
ACTATGTAGAAGGTTCATTAAAGGAAGTGCTACCCGATGCAGATGCCAAA
TtaataaaagattttttccttcCAGAGGTAAAGCAATACTTCAAGTTTTT
CTTCACCTTTTATTTAAAACTTACAAGAAATAGTttgggtctgaaaactt
tttgtagaaataatgAGGAAATTGTAAATTAATCTAGACAATTTTCGAGA
CAACtccaaagattttttaaattgtcgatTTTACCTAAAGAAAATTCCAG
TAAATTCTTcgggaaaaaatgttttgaaataccCTACAACAGTTTACCAC
TCCACTGAGACTTATGCTTTTTACATTTAGCTGATGGTTCGCACGATATC
AAAAGAGTGCAATTGTCCGGTGTTGGCTATTCGAAGGCTGCTACTGGAGA
AGAATTCTGAGACTtgatacactctttttttataagaataatataGATTT
AGGATAAAGTATTCTAAAGAATTTGACAAAATCCAAGGTGAACTATGCTT
AACGTATTCAAAAGCTCAGGCATTTATGTTCTTGTAGAagctattcttat
aaaattagcGTGTAACATGATAAAGAAATATACTGTAGCCTATACCTTTA
AGGTTATTTTTGATACTCAGTAATGCATTTGGCCCATTTACAATTTTACT
CATTCTTGCTTCACTCAAACTGTTACTAACATCACCAATCTGCCTGTCTT
GAAAAATTAAGTCAAAGTATTATATATATTCTAAATGGTAACATGATTTT
ATAAATTTAGACTGCAACTGTCCATACGACTACGACTGTTCTATTGTTAT
ATAGAGTGTTCGATTTCccgttcttttatttttctataatcctaaaatat
agaaataattaTAATTATGACAAATAATTATTATAGATAATGTATATATA
gatgtaaaagattttaatatGTTATATTAGATTCGTGTTGAGTGAAGAAA
TGTGTGTATTTTCGCCATGTTAAACTTAAAAGTAGTTTAAAGTATCTCTA
CTCTATTATTTATTGTTCCATTGACATAAATATGGATATTTTCGCGTTGA
TTGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022983XLOC_022983Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038381-exon-sc0001839-1491911889:5938..6274TCONS_00038381-exon-sc0001839-1491911889:5938..6274Clytia hemisphaericaexon
TCONS_00038381-exon-sc0001839-1510915933:5938..6274TCONS_00038381-exon-sc0001839-1510915933:5938..6274Clytia hemisphaericaexon
TCONS_00038381-exon-sc0001839-1575043694:5938..6274TCONS_00038381-exon-sc0001839-1575043694:5938..6274Clytia hemisphaericaexon
TCONS_00038381-exon-sc0001839-1491911889:6785..6872TCONS_00038381-exon-sc0001839-1491911889:6785..6872Clytia hemisphaericaexon
TCONS_00038381-exon-sc0001839-1510915933:6785..6872TCONS_00038381-exon-sc0001839-1510915933:6785..6872Clytia hemisphaericaexon
TCONS_00038381-exon-sc0001839-1575043694:6785..6872TCONS_00038381-exon-sc0001839-1575043694:6785..6872Clytia hemisphaericaexon
TCONS_00038381-exon-sc0001839-1491911889:7266..7337TCONS_00038381-exon-sc0001839-1491911889:7266..7337Clytia hemisphaericaexon
TCONS_00038381-exon-sc0001839-1510915933:7266..7337TCONS_00038381-exon-sc0001839-1510915933:7266..7337Clytia hemisphaericaexon
TCONS_00038381-exon-sc0001839-1575043694:7266..7337TCONS_00038381-exon-sc0001839-1575043694:7266..7337Clytia hemisphaericaexon
TCONS_00038381-exon-sc0001839-1491911889:7522..7597TCONS_00038381-exon-sc0001839-1491911889:7522..7597Clytia hemisphaericaexon
TCONS_00038381-exon-sc0001839-1510915933:7522..7597TCONS_00038381-exon-sc0001839-1510915933:7522..7597Clytia hemisphaericaexon
TCONS_00038381-exon-sc0001839-1575043694:7522..7597TCONS_00038381-exon-sc0001839-1575043694:7522..7597Clytia hemisphaericaexon
TCONS_00038381-exon-sc0001839-1491911889:7847..7924TCONS_00038381-exon-sc0001839-1491911889:7847..7924Clytia hemisphaericaexon
TCONS_00038381-exon-sc0001839-1510915933:7847..7924TCONS_00038381-exon-sc0001839-1510915933:7847..7924Clytia hemisphaericaexon
TCONS_00038381-exon-sc0001839-1575043694:7847..7924TCONS_00038381-exon-sc0001839-1575043694:7847..7924Clytia hemisphaericaexon
TCONS_00038381-exon-sc0001839-1491911889:8262..8306TCONS_00038381-exon-sc0001839-1491911889:8262..8306Clytia hemisphaericaexon
TCONS_00038381-exon-sc0001839-1510915933:8262..8306TCONS_00038381-exon-sc0001839-1510915933:8262..8306Clytia hemisphaericaexon
TCONS_00038381-exon-sc0001839-1575043694:8262..8306TCONS_00038381-exon-sc0001839-1575043694:8262..8306Clytia hemisphaericaexon
TCONS_00038381-exon-sc0001839-1491911889:9042..9210TCONS_00038381-exon-sc0001839-1491911889:9042..9210Clytia hemisphaericaexon
TCONS_00038381-exon-sc0001839-1510915933:9042..9210TCONS_00038381-exon-sc0001839-1510915933:9042..9210Clytia hemisphaericaexon
TCONS_00038381-exon-sc0001839-1575043694:9042..9210TCONS_00038381-exon-sc0001839-1575043694:9042..9210Clytia hemisphaericaexon
TCONS_00038381-exon-sc0001839-1491911889:9723..9798TCONS_00038381-exon-sc0001839-1491911889:9723..9798Clytia hemisphaericaexon
TCONS_00038381-exon-sc0001839-1510915933:9723..9798TCONS_00038381-exon-sc0001839-1510915933:9723..9798Clytia hemisphaericaexon
TCONS_00038381-exon-sc0001839-1575043694:9723..9798TCONS_00038381-exon-sc0001839-1575043694:9723..9798Clytia hemisphaericaexon
TCONS_00038381-exon-sc0001839-1491911889:10201..10272TCONS_00038381-exon-sc0001839-1491911889:10201..10272Clytia hemisphaericaexon
TCONS_00038381-exon-sc0001839-1510915933:10201..10272TCONS_00038381-exon-sc0001839-1510915933:10201..10272Clytia hemisphaericaexon
TCONS_00038381-exon-sc0001839-1575043694:10201..10272TCONS_00038381-exon-sc0001839-1575043694:10201..10272Clytia hemisphaericaexon
TCONS_00038381-exon-sc0001839-1491911889:10584..10664TCONS_00038381-exon-sc0001839-1491911889:10584..10664Clytia hemisphaericaexon
TCONS_00038381-exon-sc0001839-1510915933:10584..10664TCONS_00038381-exon-sc0001839-1510915933:10584..10664Clytia hemisphaericaexon
TCONS_00038381-exon-sc0001839-1575043694:10584..10664TCONS_00038381-exon-sc0001839-1575043694:10584..10664Clytia hemisphaericaexon
TCONS_00038381-exon-sc0001839-1491911889:10918..11644TCONS_00038381-exon-sc0001839-1491911889:10918..11644Clytia hemisphaericaexon
TCONS_00038381-exon-sc0001839-1510915933:10918..11644TCONS_00038381-exon-sc0001839-1510915933:10918..11644Clytia hemisphaericaexon
TCONS_00038381-exon-sc0001839-1575043694:10918..11644TCONS_00038381-exon-sc0001839-1575043694:10918..11644Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001839supercontigsc0001839:5938..11644 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0793467	0.0196833	0	0	0.451202	1.12012	0.429726	0	0	0	0.4994	0	2.70689	0	0	0	0	0	0	6.21216e-07	5.47645e-09	0	0	8.56214	1.62921	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038381 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top