TCONS_00038213 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038213
Unique NameTCONS_00038213
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length786

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038213 ID=TCONS_00038213|Name=TCONS_00038213|organism=Clytia hemisphaerica|type=transcript|length=786bp
AATGGCTCGATGACGAATGCCAAAATCTTCAGTCGCTAAGAGAATTGTCG
ATCGAGGGAAATTTCATTCGTGCTTTACCGAAaggttttttgaaattaaa
cCTTACCTATTTTCAATGCTCATCCAATTTCCTGCACAAAGCATTTTGGA
GAGAAACATGCCCTTCTCTAATCCAGACATTGGAAGAAATGTGTGTGAAT
GTGCTTTTGAATAATGGTATTGAGAAAGAAACGTCACTTGAGGGATTGAT
ACGGAAACCTTTTCAATCATTGCGTTGTGACTATTGCAATTCTCGCATAC
CACTGGGCGGCCTCTATACCATTAAACCGGTCGCCGAAATATTTGGCGCC
AAAAATATGcccattttgttttatttatgttCGACGACTTGTCGTAAACA
ACTTTTGGTTTCTACGCATATACCACGGTTCGATGAGGATGGAGCAGCTC
TGGAAAACTTTCCAATGGACTAAAAGAAACTATGTAGAATGAATATAACG
ATTATAATTTGACATTTGAATTTGTATCAAACTATTCAACCAGCCGTACA
TTTATTCTCCAGTCAAATCAACTAATAAACTGCCTCAATGGATATGTTTT
AACGGATTTCCAGGTAGCTGGTCTTcccagaaatatttttttgtccatTC
TATAACTGCTACCAGTATGTGAATTTGTGAGGACCTTTCTCGGTAGAACC
CTATCGGTCCTCGTCACGACACGAAATATGAAAAGAAGGCCACGAATGAA
TACAAAAACACAGAAATAACATGTGCGTCGAACTGG
Run BLAST on NCBI

transcript from alignment at sc0001799:32966..39987-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038213 ID=TCONS_00038213|Name=TCONS_00038213|organism=Clytia hemisphaerica|type=transcript|length=7022bp|location=Sequence derived from alignment at sc0001799:32966..39987- (Clytia hemisphaerica)
AATGGCTCGATGACGAATGCCAAAATCTTCAGTAAGAAATCCCTTGAAAA
TTATGAAATATAGATTTCTTATTATTTTCCTTAGACTGGTTATTGGTACG
GGTGTTTTTCTGCGCCAACTTTACCACGTAACATTTCTAACGCGAAATAT
ATACTTTGGTTTACACTTCAATACATAATCCCTTTCCTCGTAAGAACATT
GGCATCGTTAAATGTTTAGTTTTCACTGAAATTTTAGTTTTCTCACAAGA
AAGTCTCTTAAATCCCATTAACATATCCGCTAAATTTTGGAACCAACCTG
CATTCTCTGAAACCCAAAAGAAGTCATCAAGTTTCTTTCTGTAGGAGATT
CAATTGACCGGAGCCTGCTTCATTTTCAATGATATTAGATCGTTGACATT
GCAAAGAACTTAAGATAAAATGGAAGTCGTGAAGTCAAATATTCCTACAT
TCGTCCCAATGACTAAATTGACGATACAGTGGAGTCTCCATAACTCGAAC
ACGTACGGGGAGATTGGTTAATAAGGTATCCGCTGGCACTCGACGATGTT
TTAACGTTCATCTGACGTTATATGGACGTTGTGTTGTGAACACTAGATGA
ACCTTGAAAAAATATTGTGTGCTGGGATTTTTAACCAGGAAATTTGTTCG
AGTTAAGGAGACTTCCGAGTTGTAAGACTAGCCACTGCTGTATTTATCTT
TCTTAGNGAAAATTTGTTCGAGTTAAGAAGACTTCCGAGTTGTAAGACTA
GCCACCGCTGTATTTATCTTTCTTAGGGGGAAGGAACAAACGTGCGGGAA
AAGGGAACGGGGGGTCTACGTAATAACATCATCATATATCATTTAATGAA
AAAAATACGGCTGTCCTCCTACTGCCAAAAGTGAAATCGCATTCTATTGA
TTTTCACACCAGTGCTAGAGATTAGATGATTTAATACCCTTAGTATGTCA
AGCTTCACATGATATCTTAAGCCTTCTATTTTGTACGCTAATACCATAAT
AAAATGCCTTCCTTTTTGTTCTGTATTATGCATGCGTGGTTTAATACCTC
ATATGTATTTGTTTCTATGTGGTGTTTTTTTTTTCAATGCAAAAAAAAGA
AGTCGATGATCCCTCCTTCTATAATAACCACTTCCTTTTCCTGCTTTAGC
ACTGCGAGATTCTTTTTGAGCTGCTCAGATTGTGCCCAATATCAGCTTCG
TTCCCACTATGACATTCCGTCTAGTTACTATTTAGTTTGTTAATTTTCCA
TACTGCTCATAAGGATTTCCCACCGGGTTTCCCACCCTCCGACTTGTTAT
CTTTTTCCATCCCGTATACTTTTTTGTGATAAGAATGCTTGTCTGTACAC
AGACCCAGTATCTACATCTAATTTAAAAACTCATTATTGTAGAGAAACGT
GAGATACACTCTGGTACAGAGTACAAGAGTGCTTACAGCATATACCCTAA
AATTAAGATGAATGCTAAATTGAGAAGACTTTCAATACTATGTGTGTTTT
CGAAAAAAATATATTAGATGTACATGGAGTCTTCATAACTCGAACACCCA
CGAAAAAAGCAAATCTGTTCAACTTTTTTCGAGTTATAGAGACTGGTTTA
TAAAGCGTTTTTCACTAAAGGGACCGGGGAGCTTATTCGAATCAAGGAGA
CATTTGAGTTATCGAGGTTCGAGTTACGAAGACTCAACTGTTAGAAGTAT
TACTTAGACTCGTTTTGAATTTAATTTCGCCACTATGTTTCATGTGTAGT
TGAAGATTGTATTAAAACTACCTCAGCTAAATTTGACATTTAGAAATTGT
TTCCCTTATAGAGTCTACATCTTGAAACATTAATTACCGAAATATGCCAA
CCTGAGGCGGTATGCTGACTGTTTCATTAAACCCAATTTCCTTTGACTTG
TAAATTCAATTAAATGTCCAACGTAATCATTTTTGTTTCATAATTTTTCT
CATAGGTCGCTAAGAGAATTGTCGATCGAGGGAAATTTCATTCGTGCTTT
ACCGAAAGGTTTTTTGAAATTAAACCTTACCTATTTTCAATGCTCATCCA
ATTTCCTGCACAAAGCATTTTGGAGAGAAACATGCCCTTCTCTAATCCAG
GTGAGATCTGTCTGTCTACTTTGTCTGGCCTGGTCGCATCTTAAAAAACT
AGTAAACAATACAACTAGAGGATCAAACGTTACTAACTTTTCCTGATCAA
AGCACATTTCAAAGTTACAAAATATTTCTACAGTATCACAGTTTAGCTGT
TGGAGTGGAGGAATAGCTGTTTTATACTAAGATATCGTTTCTTTTTCGCC
CGGCGCACTTTTCCCGGACCTTAAACCATTCTCTAGATCGCTTTAGCCGG
CCCTCTTAGCTTACAACCCTTAACGCTCTTAATCAGTCTTATCTCCCTCT
CTTATCTACCCGTCCCCGATGTCAATTTTCAAGCCGATAAAAGGAAGGAA
ACCTAAAGTCAAGAATTTTTACTTTTTTTCGCGGCTTCACCTCTCTTATT
TTATGCGTATCTAGATCATTAATCGAATATTTTAATGTCACGAGAAAGTC
ATTTTTCGCATGACAAAGATTGTGGGTAAACGATAACGCTACAGNTCATT
AATCGAATATTTTAATGTCACGAGAAAGTCATTTTTCGCATGACAAAGAT
TGTGGGCAAACGATAACGCTACAGAATGCGTACCGCAACTTTCTGATAGT
CATGAATGTGGGCAATCGTTCACACACCGCAATTTTTCTGGTATTTTAAG
TTAATATGTATTTTTCTTTTGATGAGGTAGCTGGATAAGCCCCCGAGTAT
TAATATCAAAAAATAGATGGAAATTTATCAGGGATACGACTGTTTAAACT
GGTTTAAAGAAGCTTTCAAATATAGAAAAGGCTATTACAAGATTTATTGA
TTCATTTTCTATAAAGGCTAACAATTACATGTATTTTGACATTGATTCTA
TTTAGTTGAAATTTTTATATCTCTATTGCCTATTACCAAAAAAAATACTT
TTTTTGTATGAAAACATATGTAAAATGCCCCACTATTTTGCTGTCTATTT
TTATGTATTTAAATAGAGTCTAAAAGATATTATGATGTCATGGAGTAATG
ACGTTCTAAACCTTCTTCGTGCCCTTAAAAGGGAAATTAAAACCAAATCA
GATATTTTTTGACCGTGTCACTTGACACCCTTACGCCCTAACTAGGTTTT
TGGCCTTTTTAGGGATCCGCTCAATCAATTTGTGATCGAAAAAATACTCG
CCTCTGTGTTACACCACTATTGAACCTCTTGTTGATCCCCGAAAATTTTC
AGAAGAAACGTTAGATTTTTTTCATTTTGACAATGCGTACAACTTTTACT
CCTTGAATAAACGTTTTTGTAAAATTTTGATAAATTCAAACGCCGCGCTC
TGTGTGGCTACTGTGAGTATGCCCCAATTCATGGAAATAACGGATCGCTG
AAAGTTGAATTTTGAGAATTATAGTTAAAAAATGATTTTGATACTGCTTC
GTAAATAATACTTAATATTAATATTTCAGGCATATTGATAATCCAGTTTT
TATTTTTTTGTCGGTTCCGGGATTTTCAGAAAGGATGTATAATTTCAAAC
GAATCAACTTTTTCGCATCTCTTAGCACATATTTTGATCGTGAGATACAA
TTTTTTCGGTCATGAATTTTGTTTTCAAACATTCAAGGAAACCACAACAT
ATACCAACATTTCAGAGATTAAATTTTTTGTGTCTTCATGATTTTCTGAT
CCTCGATAAGATTAACACGTATTAAATTAATACGCATGCGTTCGAAAATG
TAGAATTCGGTTTCGGACTAAAATGTAATCCAACTTTGTCCGAAATTTAA
GTTAGTTGGTCTTTCTTGAACGTTTGCCGTTAGCTAGTACGCGGGGTCGT
TTAAAGCACCATTGATTTTTTGGGCAAGATAGGCTTCAAAGAACGTTAAT
AAATGCTTGTATCTTGAAATTGAATATTTGATTAAAGCCTTGAAACTGGC
ACTCAGTACCTAGCACACTCAGTTTATAGTTTTTTCAGTTTGACCCTCTC
ATAAATGGCCAAGGTTTTGTCGGTATTTGAACTTTTTCAAAGCGCCATAT
ATCGTACGTGCAAAAAGAATTTGCTTTTTTATGTTTTCGTTATCTTGATT
AAATCATACCAAAATATCTGTGACCGCAATCTTTGCTGTCTCCCTTCTTC
CTTCACACCCCTGTAAACCTGTAACCCCATATTCTCCCGCCACCCACCAT
CTTTACTCATCATGATCGTAAATTCTCGTTAGTGGCTTGATTAAATTTTT
ATTTCGACGCGCAATTTTGATGGCTAGCTACTGACTTTCACGTGGTATTT
ATATACCGGGAATTTATCTCGTGTTCACAAAAATAAATAAGCAGTTAAAA
GAATTGGCTACAATTTGGAGCGCTTAGAGTTTTTTGTCAAGTGTGCTAAG
CCACACGCTACTTAACTAGACTATAATCTGTTAATATCATCTTCCCTCCG
GTGTAGCCTATGAAATAGTGTCTATTATAAGTATTTTTGGTCAATTTCTG
ACCGTATTAGGGTCCTTCGGGCCTAAATTGTGACTCTCGATTCCAACCCT
GACCCTAACTGAACACAGTACAAACAATCTGAACGCAGATTTGAGATCTG
GCGATGCTTTCAAATATTCTAAAAAATGTCGTGTCATGATTTTATAACCA
GTTAAAAATTAAGTGTCCACATACTATTGAGTAAAAGATGCCACAATTAT
TGACTCTTTGACACTCATTTTGCCGTAAAAAGTTACTATGCGATCAGAGT
CAAAGGGACCCGAAAGCTCCTTTTAATTTTTTGCAGCATTCCAATATTCT
TCTACAAAATCTTTATGCTACTGATATTTTTCTGAAGCAATTCAAAGCAT
AATTCACTCGGTGGTTTTACCTTATTACCTTTAGACATTGGAAGAAATGT
GTGTGAATGTGCTTTTGAATAATGGTATTGAGAAAGAAACGTCACTTGAG
GGATTGATACGGAAACCTTTTCAGTAAGTCATCGTTGTCATTTTTTTTAA
TCTTAAGAGCAAGAATCGATATCTATCTATTATCTCGAATAACTTCCTAT
AAATCGAATCTCTCTGTTGATTCGAGCGGATTAAGTTTCTCCCGCTCAAG
CTCGAATTTATCAACCGTACACTTTTTTATTGAATGTCAATAATTTAGAA
ATAAAGCTAATGCACTCATAAACAACGCTCTACTATCCGATACGCTCCCT
TATTCAATGTATTCAATGAAAATTTCCCTCGAACGTTGAACACAAAATGA
TTGTCAACTGTAAAAGTTATCTTGGTGTGACCGTCTTAGATAAAAAAACT
GCATGAAAATCTAACATCTGGCTTTGACTAAAAATGCCTTAGTATTCGTA
TTCAAACAATCCACTANAAAACGAAGGTCTGGCTTTGACTTAAAATGCTT
TAGCATTCGTATTCAAACAATCCACTCAAGTTCGATACAAACCTACAAGA
GAATGACGCATAGGTCATAATCAAATTAATTGGATATAGAGACCCAAGAT
GTTTCTTTTTGACGATGAAAACACCAGTTGTGTTTTCCTCTTTTTCCCTA
TCATGTCGCGGCCGTGAAACATGGGGGAAAATTCAACCTACTCCTATTTT
GTAGAATGGATTAGAAACCCAGCTGATGCATGTTAAATGAATTTTTCATT
TTTATTTTTCTTTACAAAGAGTCATCATATATTCCTTATTTTTTTTAATA
TCATTAAACGTTATTAATTAAGATGATTAAGAAAAAGGTACAAAATTAGC
ATCTAGTTGCCATAGCAGCCGAAAAGGATTTAAAACCTTTGGATTTGTAT
GGCAGGAGATTAAATTCCTCAATCCTGATCTCCTTTCATCCAAGCCACAG
GAGGTCTTTGCATATTTTTACTTGGATGTATGACGAATCTATTTCTATTA
CAATTTGAGAGATTCACTACCGTCAACTCGTGATTTTTAGAAATTTTATC
TCTTGGATTTTGTAAAAAAACATTCGGCAGTTAAACAATGCGTTGAAATC
CAGAACTGACGGTCGATTTAATACTTCCCCAAATTCAGTTGCGAAAAATT
AGTGAATCTCTAAATCTTCCATAGTTTCTCCCCTGATTAATACGAAAATC
CAACTAAAAACCGTCTTGAAACTGAAAACTACAGGATCGAGGCTATTCCC
AACCTCAATTTTACTTTTGTTGCCATTTTTAGGTTTCCAAATAAAAGGAA
AATTCCAAATAATATCAAAGCACGCTTGTAATATAAGGTTGAAACGTGTT
AATAAAATTTTGAAGAAAGCCTTTGGTAGCTGGAAAGAGGTGCTTCCTCA
CAGTTTTTACATATAGAACCAGCACGATATGATAGCTTTCGAAATCACAC
ACTCAGTCAACTAAGTCATACTGTGTTTACCTAACGAAAAGAACAGTTTT
CTCTCTCACTCAATCACACCTTTTTCCCTTCTCTTCTTTTGCTACCAGCA
GATCATTGCGTTGTGACTATTGCAATTCTCGCATACCACTGGGCGGCCTC
TATACCATTAAACCGGTCGCCGAAATATTTGGCGCCAAAAATATGCCCAT
TTTGTTTTATTTATGTTCGACGACTTGTCGTAAACAACTTTTGGTTTCTA
CGCATATACCACGGTTCGATGAGGATGGAGCAGCTCTGGAAAACTTTCCA
ATGGACTAAAAGAAACTATGTAGAATGAATATAACGATTATAATTTGACA
TTTGAATTTGTATCAAACTATTCAACCAGCCGTACATTTATTCTCCAGTC
AAATCAACTAATAAACTGCCTCAATGGATATGTTTTAACGGATTTCCAGG
TAGCTGGTCTTCCCAGAAATATTTTTTTGTCCATTCTATAACTGCTACCA
GTATGTGAATTTGTGAGGACCTTTCTCGGTAGAACCCTATCGGTCCTCGT
CACGACACGAAATATGAAAAGAAGGCCACGAATGAATACAAAAACACAGA
AATAACATGTGCGTCGAACTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022842XLOC_022842Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038213-exon-sc0001799-1575043694:39957..39987TCONS_00038213-exon-sc0001799-1575043694:39957..39987Clytia hemisphaericaexon
TCONS_00038213-exon-sc0001799-1575043694:37888..38032TCONS_00038213-exon-sc0001799-1575043694:37888..38032Clytia hemisphaericaexon
TCONS_00038213-exon-sc0001799-1575043694:34965..35053TCONS_00038213-exon-sc0001799-1575043694:34965..35053Clytia hemisphaericaexon
TCONS_00038213-exon-sc0001799-1575043694:32966..33486TCONS_00038213-exon-sc0001799-1575043694:32966..33486Clytia hemisphaericaexon
TCONS_00038213-exon-sc0001799-1510915933:39957..39987TCONS_00038213-exon-sc0001799-1510915933:39957..39987Clytia hemisphaericaexon
TCONS_00038213-exon-sc0001799-1510915933:37888..38032TCONS_00038213-exon-sc0001799-1510915933:37888..38032Clytia hemisphaericaexon
TCONS_00038213-exon-sc0001799-1510915933:34965..35053TCONS_00038213-exon-sc0001799-1510915933:34965..35053Clytia hemisphaericaexon
TCONS_00038213-exon-sc0001799-1510915933:32966..33486TCONS_00038213-exon-sc0001799-1510915933:32966..33486Clytia hemisphaericaexon
TCONS_00038213-exon-sc0001799-1491911889:39957..39987TCONS_00038213-exon-sc0001799-1491911889:39957..39987Clytia hemisphaericaexon
TCONS_00038213-exon-sc0001799-1491911889:37888..38032TCONS_00038213-exon-sc0001799-1491911889:37888..38032Clytia hemisphaericaexon
TCONS_00038213-exon-sc0001799-1491911889:34965..35053TCONS_00038213-exon-sc0001799-1491911889:34965..35053Clytia hemisphaericaexon
TCONS_00038213-exon-sc0001799-1491911889:32966..33486TCONS_00038213-exon-sc0001799-1491911889:32966..33486Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001799supercontigsc0001799:32966..39987 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0125265	0.0215783	1.03647	1.03174	30.5246	15.1257	9.37977	7.51824	4.27469	7.58372	12.2923	5.33028	0.00629657	0.00544623	1.19085	0	0.659676	2.37679	2.51338	1.13631	1.73275	2.55238	0.000167112	2.43509	0.0992311	0	4.27951	3.36097	1.72681	0.025726
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038213 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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