TCONS_00038065 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038065
Unique NameTCONS_00038065
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length896

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038065 ID=TCONS_00038065|Name=TCONS_00038065|organism=Clytia hemisphaerica|type=transcript|length=896bp
CCCCCCCCATGATCAATAAATCATGTAGTTTGGTTTTCTTATTAGAAATC
CATTGAAATGTTACTTTATCATTTATAGCACAATATATAAAAAGCTGGAA
AATGGAAAAGGAAAACCAACcaataaatgaaaatgattcTACAGtgattc
tcaataaattttatttgagaCATTAACGATGAAAGTTCACCTCCTTTAAT
TCATTTCAATGTTTTAAATTGACGGATTGACGCTACTCGAAACATGACTG
ACTTACGTGACTATTTGTATGACTGTAGACTGACAGTTACACGGTTACAC
TAAAACACTATTTGAAACATGACAACATCTGGAAATCAAAGTGCAAAGAA
TGCGGCGTTTCTGCTAAATCAAATAATTCAAAGGTTTGTACCAATGGCCA
CCCGTTCACGAGAAAGAAAAAGCCGCCAATCGAGTGCGTGCCAGCGGGCA
TGACCCAGGTCACCGATGTCAGGCATAATTGGGAgacaaatTCACACACA
TTGCATCAACACCATAGTCTGCATTCGGTAACActctttggaaagaaaac
tAAAAACGGTTACCAGTTCAGTCACCTTTCAACACCAGGGTTTGGCAATA
GCATCCTCAACAACCAGTTCGGGGATGCTATCAAGAACGTTTTTGAGGAG
CAATTCATGGACGCCTATCCTTTACAGAAAAAGACGCAACCATCAACGAC
AACGAAACCAAATGCTGGCTCTTCCACGACAACCAAATCAGACGCTCTGG
CATCTACGACATCTACgacagaaaaagatttttatagcGTGGAAGAAGTT
TTAACTATGACtgacaattcatgatattcatgatgtagcCTTTTTCACTT
CCGTAATattattcaaaacatttgatAGCCATTATTAGCGGCAACA
Run BLAST on NCBI

protein sequence of TCONS_00038065-protein

>TCONS_00038065-protein ID=TCONS_00038065-protein|Name=TCONS_00038065-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
MTQVTDVRHNWETNSHTLHQHHSLHSVTLFGKKTKNGYQFSHLSTPGFGN
SILNNQFGDAIKNVFEEQFMDAYPLQKKTQPSTTTKPNAGSSTTTKSDAL
ASTTSTTEKDFYSVEEVLTMTDNS
Run BLAST on NCBI

transcript from alignment at sc0001766:18511..22436+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038065 ID=TCONS_00038065|Name=TCONS_00038065|organism=Clytia hemisphaerica|type=transcript|length=3926bp|location=Sequence derived from alignment at sc0001766:18511..22436+ (Clytia hemisphaerica)
CCCCCCCCATGATCAATAAATCATGTAGTTTGGTTTTCTTATTAGAAATC
CATTGAAATGTTACTTTATCATTTATAGCACAATATATAAAAAGCTGGAA
AATGGAAAAGGAAAACCAACcaataaatgaaaatgattcTACAGGCAAGG
CATGGGCTCAGTGAGCTTAATTTGTCAATccctttactttacaaaaacTT
TTGCTTTCAGAAAATTTAACGAATCAGATCATTTGCGAAGTTGAGTGTTT
TATTAATGGAATCTAAATTCGCAAATCCCCCAAATTTGTTCAGGAAGTTG
ATTCGTGCTAAATTGGATTCCCcatgcaaaaatgaaaatacctaAGGTAA
AAGCATCTAATGTGNTCGCTAAATTGGATTCCCCatgcaaaaattaaaat
acctAAGGTAAAAGCATCTAATGTGCAATTCAAAATTCTGTGACATTTAA
ACCAGAGATTTGAAAAAGGGATGTAAGAAAGGAGTTTATTCTAAACTTCA
AGAGCTCAAGAGCTAGAATCTCACAATGTCTGTTTGTCTCAAACAACGAC
AGCTAAAGAAGGTACAATGTTTTGAATAGAAAGCGGCCATCTTTATTTAG
TTTGTCTATATTTGTCGGCTACCGGCATTTTACGATCACACGCTTTTGTA
AACAGGGCGGACCTAGCTATGATCCTTATAATATAACTTTACGTTCAAAC
CAGATACACATGGTTTTATAGTCACTTTCTTTCTTATTAACGAAGCTATT
ACTCCCATAAGAGAAATGACCAAAGAAACACTTCATCTTTAATTTTGAGT
ACCTTCTGTCGCTTCTGTAAACGCCATTgagaaaaacattcaaaaattgt
cgaattttcctaaaatttggtacacttgTACTTTGGGTGAATGTCTATGG
GAATTCATATTTCAGTTCtttaatttttggtttttagggtctgggacgag
tttttcctcaaaacgaggctaaaaattttgaactGAACTGACTATTCAAC
TCACTTAAATCGGagtaaaaaattttattatcataAAAAgacattgggct
attccattgcCCCCTAAAACTAAACAATGTAATATTGTATTATTGAGGAA
GAAAAAATCTGTCTGAGaggaaaaagaagaacttttaCCTTTTTTCGGCG
CACTCTAGAATACTTTGGCAAGAAGATTTTATGAATGCTTAAGAAGTCGT
TGTtataattatttctcaatcaAAGGTTTCAAAGAAGCATAGTGTTTCAT
AGCCTCTTGAACAAAATGAGTTGAAAAGGCGATTCGTAtctccatttttc
aaatttctgaaaGTATTCACTTCTTTTGTCTACgcacatttttttttcag
tgattctcaataaattttatttgagaCATTAACGATGAAAGTTCACCTCC
TTTAATTCATTTCAATGTTTTAAATTGACGGATTGACGCTACTCGAAACA
TGACTGACTTACGTGACTATTTGTATGACTGTAGACTGACAGTTACACGG
TTACACTAAAACACTATTTGAAACATGACAACATCTGGAAATCAGTAAGT
TTTATTCCGTTATAGTTCAGGAGTAAAAACTGTCTTCAATCTGTATTGTG
TTTGGAATATTCAACATCGAGACAGAATGCTCGCAAAAATTGATTGTACG
AGAAGAAAAATATAGaagacaagaaatttttcttcgcACTCTTTGACCTT
TTTAATACGCTGTATCAGGGGAAGAAAGATACATTTACTGATaactttgg
agaaaaaaatcccTCTAGTCCATTTTTTCATCTAAGGAGTATCAAAGAAA
TCTTTTTACTGTATGATTCCCTGTGATTGATAttcctttcttctttttgt
ttcacAGCTCCTCCTGCAAAAGCAAAGAAATTGATGCCAGTCGACTACAG
TCTACCAAGACTGAAAGTATGTTTATTAAATATTCGTTTAATTCATTGAG
CAGACATTTTAACTTCCTTATTCAACTCGTTTTCGTATTACCTTGTAAGT
ATTTTTaatgtgtttctttttatttaaaaaatagtaCTATTATTCTTCTT
TTACTTTAGAAGTGCAAAGAATGCGGCGTTTCTGCTAAATCAAATAATTC
AAAGGTTTGTACCAATGGCCACCCGTTCACGAGAAAGAAAAAGCCGCCAA
TCGAGTGCGTGCCAGCGGGCATGACCCAGGTCACCGATGTCAGGCATAAT
TGGGAgacaaatgtaatttttttttcataattaaaaTTTCCATTCGAGGA
ATTGTTTAAAGGCATTATCGGTTATGATCCTTGGGAAGTTAAATTAAATT
ATGACTGACTGCACATGTACGCTGTATAGTTTTgcagcatttttattttt
ataNATTTgcagcatttttatttttattagaatatttAAATTGCATAATG
GTGGAAGAATCATTTTGGTCAATAGAACTGATTGATAATTCTTGAATAAT
GAATCCACTTTTTATTTCTGTTTCTTCTGTTTCTTCGcttaaaaagccat
aaaatTCCACAGATTGGTTGTACCCTTAATTATCAACCTAAACGTTATTC
ATTGCTTTTTGTTTCAGTCACACACATTGCATCAACACCATAGTCTGCAT
TCGGTAACActctttggaaagaaaactAAAAACGGTTACCAGTTCAGTCA
CCTTTCAACACCAGGGTTTGGCAATAGCATCCTCAACAACCAGTTCGGGG
ATGCTATCAAGAACGTTTTTGAGGAGCAATTCATGGACGGTAAGTATTCT
TTGCTTCATAACCTATATTGCTAATTGATTGCTTGTGTTAATAATATTat
tttgttaaccggttactttttcgaagcgggctacacgactttttgcgcaa
tgcaattggttcttttcgcacgACNATTattttgttaaccggttactttt
ccgaagcgggctacacgactttttgtgcaatgcaattggttcttttcgca
tgtcgacgggcctacattgtccagagttgcccgtcgttaggaaaattcat
tgtgacgtcactttttcaaaggaatgaACAATgtgttgacatcatttctc
caattttttcggtctactgaaaatattgccctcggtcaacgcaacaacct
cgcaagctcggtcaacgcaacaacctcgcaagctcgaccgtcacttgacc
tcgggcaatatttctcagtacagccctcactaaccagtcattattgtatt
aataatAGTTTTCACACGGGTGTGATTTACTGATTTTTTCCTTTGATAAG
TACTAGTGATAACATGGTTttgagggtgatttgggattaataaccccgag
gttcattgaaaacatttcaaaatagcccaaACGTAGTGTTTTCAATGTTT
TAGTTTTTGGTGCACATAGCCGTTTTAACAGTAGACCTTCTATACCAAAC
TTTATGGTGATAGAAATATAttaatcaaaaagattttcaaaattttacgc
atttctgacgtttttgtaacgtcattggttaaaaaatgttgaaaagtgaa
gcaattccattgggcaaatctgacgtaacggtttaaaaaagttgaacttc
ttccacctttttattttttcgctcgaaaatcttttaatgacgtaatcttt
tctgtaggcaaaaacagttgtaaaaaaagttttcgctcattaCGCGCGAG
AGTGGAGGCCTTTATTCTCTGATCTTTCCTTTTCCTCTTTTAGCCTATCC
TTTACAGAAAAAGACGCAACCATCAACGACAACGAAACCAAATGCTGGCT
CTTCCACGACAACCAAATCAGACGCTCTGGCATCTACGACATCTACgaca
gaaaaagatttttatagcGTGGAAGAAGTTTTAACTATGACtgacaattc
atgatattcatgatgtagcCTTTTTCACTTCCGTAATattattcaaaaca
tttgatAGCCATTATTAGCGGCAACA

Coding sequence (CDS) from alignment at sc0001766:18511..22436+

>TCONS_00038065 ID=TCONS_00038065|Name=TCONS_00038065|organism=Clytia hemisphaerica|type=CDS|length=1125bp|location=Sequence derived from alignment at sc0001766:18511..22436+ (Clytia hemisphaerica)
ATGACCCAGGTCACCGATGTCAGGCATAATTGGGAgacaaatTCACACAC
ATTGCATCAACACCATAGTCTGCATTCGGTAACActctttggaaagaaaa
ctAAAAACGGTTACCAGTTCAGTCACCTTTCAACACCAGGGTTTGGCAAT
AGCATCCTCAACAACCAGTTCGGGGATGCTATCAAGAACGTTTTTGAGGA
GCAATTCATGGACGCCTATCCTTTACAGAAAAAGACGCAACCATCAACGA
CAACGAAACCAAATGCTGGCTCTTCCACGACAACCAAATCAGACGCTCTG
GCATCTACGACATCTACgacagaaaaagatttttatagcGTGGAAGAAGT
TTTAACTATGACtgacaattcatgaATGACCCAGGTCACCGATGTCAGGC
ATAATTGGGAgacaaatTCACACACATTGCATCAACACCATAGTCTGCAT
TCGGTAACActctttggaaagaaaactAAAAACGGTTACCAGTTCAGTCA
CCTTTCAACACCAGGGTTTGGCAATAGCATCCTCAACAACCAGTTCGGGG
ATGCTATCAAGAACGTTTTTGAGGAGCAATTCATGGACGCCTATCCTTTA
CAGAAAAAGACGCAACCATCAACGACAACGAAACCAAATGCTGGCTCTTC
CACGACAACCAAATCAGACGCTCTGGCATCTACGACATCTACgacagaaa
aagatttttatagcGTGGAAGAAGTTTTAACTATGACtgacaattcatga
ATGACCCAGGTCACCGATGTCAGGCATAATTGGGAgacaaatTCACACAC
ATTGCATCAACACCATAGTCTGCATTCGGTAACActctttggaaagaaaa
ctAAAAACGGTTACCAGTTCAGTCACCTTTCAACACCAGGGTTTGGCAAT
AGCATCCTCAACAACCAGTTCGGGGATGCTATCAAGAACGTTTTTGAGGA
GCAATTCATGGACGCCTATCCTTTACAGAAAAAGACGCAACCATCAACGA
CAACGAAACCAAATGCTGGCTCTTCCACGACAACCAAATCAGACGCTCTG
GCATCTACGACATCTACgacagaaaaagatttttatagcGTGGAAGAAGT
TTTAACTATGACtgacaattcatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022724XLOC_022724Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038065-proteinTCONS_00038065-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038065-exon-sc0001766-1491911889:18511..18654TCONS_00038065-exon-sc0001766-1491911889:18511..18654Clytia hemisphaericaexon
TCONS_00038065-exon-sc0001766-1510915933:18511..18654TCONS_00038065-exon-sc0001766-1510915933:18511..18654Clytia hemisphaericaexon
TCONS_00038065-exon-sc0001766-1575043694:18511..18654TCONS_00038065-exon-sc0001766-1575043694:18511..18654Clytia hemisphaericaexon
TCONS_00038065-exon-sc0001766-1491911889:19861..20054TCONS_00038065-exon-sc0001766-1491911889:19861..20054Clytia hemisphaericaexon
TCONS_00038065-exon-sc0001766-1510915933:19861..20054TCONS_00038065-exon-sc0001766-1510915933:19861..20054Clytia hemisphaericaexon
TCONS_00038065-exon-sc0001766-1575043694:19861..20054TCONS_00038065-exon-sc0001766-1575043694:19861..20054Clytia hemisphaericaexon
TCONS_00038065-exon-sc0001766-1491911889:20570..20722TCONS_00038065-exon-sc0001766-1491911889:20570..20722Clytia hemisphaericaexon
TCONS_00038065-exon-sc0001766-1510915933:20570..20722TCONS_00038065-exon-sc0001766-1510915933:20570..20722Clytia hemisphaericaexon
TCONS_00038065-exon-sc0001766-1575043694:20570..20722TCONS_00038065-exon-sc0001766-1575043694:20570..20722Clytia hemisphaericaexon
TCONS_00038065-exon-sc0001766-1491911889:21078..21249TCONS_00038065-exon-sc0001766-1491911889:21078..21249Clytia hemisphaericaexon
TCONS_00038065-exon-sc0001766-1510915933:21078..21249TCONS_00038065-exon-sc0001766-1510915933:21078..21249Clytia hemisphaericaexon
TCONS_00038065-exon-sc0001766-1575043694:21078..21249TCONS_00038065-exon-sc0001766-1575043694:21078..21249Clytia hemisphaericaexon
TCONS_00038065-exon-sc0001766-1491911889:22204..22436TCONS_00038065-exon-sc0001766-1491911889:22204..22436Clytia hemisphaericaexon
TCONS_00038065-exon-sc0001766-1510915933:22204..22436TCONS_00038065-exon-sc0001766-1510915933:22204..22436Clytia hemisphaericaexon
TCONS_00038065-exon-sc0001766-1575043694:22204..22436TCONS_00038065-exon-sc0001766-1575043694:22204..22436Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001766supercontigsc0001766:18511..22436 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	6.27731	6.75384	6.00709	8.41372	4.19558	4.73011	7.03932	5.07148	3.8159	5.1917	1.3268	2.07012	0.155068	0.426406	0.109792	0	0.114303	0.105449	0	0.0538316	1.11273	4.24435	0.0708108	0.0755712	0	0.0583981
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038065 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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