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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037928 ID=TCONS_00037928|Name=TCONS_00037928|organism=Clytia hemisphaerica|type=transcript|length=489bp
GTAGGTTTATGACTATCATGTTTTATTTGGAGAAACCTGAAGAAGGTGGA
GAAACGGCTTTCCCTGCCGCTGATAACATCACTTATTCAGATGCTGAATT
TCGTCGACATGGTTATCCAGCAAAAGATTTATTCAACTTGAACGAACATT
GTTACGATTCAAATCTTGTTGTGAAGCCCCAGAAAAGATCAGCTGTAGCC
TGGTATAACCATCATGTTGATGCGAACACAGGCTGGTTGGGAGAGATTGA
TGATTGGTCTTTGCATGGTGGTTGTGAGGTGCGCAAAGGTGAAAAATGGA
TTGCTAATTTATGGTTAACAGCTCCTTATGCCGGCGAAGAAACGAAATTG
AGTATGTATTCGGCAGAATATATGGAAATGATGAGAGATAGAGGTGAAGA
TCTGTATTAAATGAACTTGACTTATTTTAGTGTAGTTTGATGAACAGGAT
AATCATATCACTTAAATCCTTATAAATAATAAGTAGAAT Run BLAST on NCBI transcript from alignment at sc0001738:16043..21579+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037928 ID=TCONS_00037928|Name=TCONS_00037928|organism=Clytia hemisphaerica|type=transcript|length=5537bp|location=Sequence derived from alignment at sc0001738:16043..21579+ (Clytia hemisphaerica)
GTAGGTTTATGACTATCATGTTTTATTTGGAGAAACCTGAAGAAGGTGGA
GAAACGGCTTTCCCTGCCGCTGATAACATCACTTATTCAGATGCTGTAAG
TTTTCTCTTTTCCTCGATTAGCTCAAAGgttttcacactttttacaccct
tagcACTTTCTCCNTTTTCCTCGATTAGCTCAAAGTTTTTCAtacttttt
acacccttagcACTTCTCCCATCTTATTTCATTACAATTTTTACAGTGTG
CGTCTCACGCGCGTTGTATTTTGCGCAAGGCTTAAAATGGgacagatttc
gaaaaataaagatttgataGATTTagagatttgaattttttcttaaaatg
tcACCACTtctttctgaaagaaaaagaacacatcgttgatttttctattt
tttaaagagAAAGAAATATCTTAATGGTCTCTAGTGTTGGAAACTTCATC
AACTTATTTTGAATTGACAGGAATTTCGTCGACATGGTTATCCAGCAAAA
GATTTATTCAACTTGAACGAACATTGTTACGATTCAAATCTTGTTGTGAA
GCCCCAGAAAAGATCAGCTGTAGCCTGGTATAACCATCATGTTGATGCGA
ACACAGGCTGGTTGGGAGAGATTGATGATTGGTCTTTACATGGTGGTTGT
GAGGTGCGCAAGGGTGAGAAATGGATTGCTAATTTATGGTTAACAGCTCC
TTATGCCGGCGAAGAAATGAAACTGAGTATGTATTCAGCAGAATATATGG
AAATGATGAGGGATAGAGGTGAAGATCTATATTAAATGAACTAAAATCAA
TTTAGTGTAATGTGATGAACAAGATAATCATATTACTTAAATCTTTATAA
ATAATGAGTAGAATATATTAGTTtaaaattcgatgaaaataaAAGTTCGG
ATCGTATCTTAACTTTAAAAAAGGCCTTTGGCACCGGAGGCGCAAACACT
CCCCTTCTAATGCACCCGACAATTTTCTTCGAGGAATACACTATAATTCT
TTTCATTTCTCGATGCTAACGGAAGTGTGGTGTCGGTCGGGTGTAGGAAA
TTTTATAAAAtcgggctcttccagaaaatgtccgtacattgGGGGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTTTTTttggttagcagattttttgctaagttcggaacggttttgtgag
cctgattcgcatcccctatatcaaaacttatcagaggggatgtgggCAGC
ctagggtggaggatatattgtcccggcgtggggtagcgaaaaatcatcaa
aatttgccttgtggggtaaatttgctctgtctggggggtcaactgatgct
tgtccggggggtaaaacccgttttctgggtCACTGGAAAtcgttatatcc
tccacccaccccccatattcaatttttttctggccaTTCATGGTTTAGTA
GAATTGAATATTCTAacctttagaaatttttaaatacaaaaaGCTTTATG
AAATTAATATGACTGAAATTTGTGTAGGTATATTTCTGAATGATGAAGTT
CGAATAATGACCTCACTCACTTAACTTACTCTTGAGTAAGTATACTTACT
TTTGAGTTTTCAAGACAATTTGAAACctcattacactttttttataagaa
catccaaaatttttgaagccttcagatattcttaacttttcgggttctaa
gcctaaaaatgttcttaacatgtttttgtCTTCACCATgttttaagtatt
ttttgtccattttcctgatAAATCAAGTGTTTTCGAGTCCATAAAACCAT
AAAATGTttataatattttggtcatcaaagccttatattcttattattat
tcttatttgttcttataaaaaacatgtacttaaACTTTCACtcattttac
tcattttcttcCACTTGATTACTTTTTCAACAATCACAAAACCGCTATTA
AATTCAAAtgcaatcaaaagttacagcctctTTTTGTCTCCGACTTTAAT
TTAAAGGCTCTGAagtcttgttttttttaatgtttattttcgCACACAGT
ATATTACAACATGTGGTCGTATTTGGTAATTAATTGATCGATATAAGCCC
CCCGAATGAAATACTTGAAATACGTGAAGTTAAGTGAGATTTATATGACC
TCGATAGCTTTGTTTGAAACGACATTTCTGATGGtaactttctttaaaaa
ggGTTCAATATCCATTCTAGCGATTAACCATTCGATAATTTTCCGACAGA
TGCTTAGGATGCTTACAGGCACTAACCAAGGATGCTCTTCTATAAGCATT
CAAATACCATTAGAACTTAGATTCTTGACAATCTTTCTTTCAATATCGAT
TCCATCCACTTTAATTTTGCGTTTTGTTTCGATCTCACCATTCCGACACA
TTTCAGGTAACTCGTCCAAAAGATTTTGAACATGTCGTTGATATGATTTT
TCTGTTTCCTTGCCATCAAACTGAATATCAAATTCTATCTTCCGAATATT
CTGCTCATTTTCAATATTGTTAATCGGAGCTTCATCAATGTGGCTCAAAT
CAATCCAAAGTTTGTATTTGAAAGTCTTATTTTCTCTCTAAATGACTTTt
cttgttttacaaaatttccaGATCGGTTTTGGTTCTCTCACTTCATATTT
TGTTATATCTTCCAGGCGATACTCCTatgttttgtttgattttatctTCC
CAAGCAATCCCTCTTTTATGGCTTCCTCTAAAATGTAATCTTAAATCCTT
ATTGCAACATAGCATAATGGCTGCTATAGCTACATGAAGGAATGAGAAAA
CAGACCATGttccaaaaaaagatttcataatCGATGACTTGACACAAATT
GTTCCAATCAAAGATGAGCAAAACTCTAAAACCGAGACAAAAAGAAGTTT
GATATAGCAAGTCACTGGATTTGGTTGAAGAGAAATGACGAGTTTTGGCA
AGAGGGATAAAGAAGAAAGACAGTGAAGTAGGCAACCGATTGCCTTGTGC
AAGTTGGACCTACATGAATGGTTTTGTCGTCACCAACAAATCAACCAGCC
GTAACCAGTTGGATTGGGACTCACTTCAGTGAGGGGGGCCGGTGCGTTAT
GGATACCGTCGAGAGGAAGGCCCCGAAACGGAACGCATTCTCTCCTGATG
ACCCATGAAGACTGGATCCGGTATGCGGAGCAATGTGGCTGGCAATCACT
TACCAAGGTAAGCTGTTATTCATTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAACATTGT
TACGATTCAAATCTTGTTGTGAAGCCCCAGAAAAGATCAGCTGTAGCCTG
GTATAACCATCATGTTGATGCGAACACAGGCTGGTTGGGAGAGATTGATG
ATTGGTCTTTGCATGGTGGTTGTGAGGTGCGCAAAGGTGAAAAATGGATT
GCTAATTTATGGTTAACAGCTCCTTATGCCGGCGAAGAAACGAAATTGAG
TATGTATTCGGCAGAATATATGGAAATGATGAGAGATAGAGGTGAAGATC
TGTATTAAATGAACTTGACTTATTTTAGTGTAGTTTGATGAACAGGATAA
TCATATCACTTAAATCCTTATAAATAATAAGTAGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037928-exon-sc0001738-1491911889:16043..16137 | TCONS_00037928-exon-sc0001738-1491911889:16043..16137 | Clytia hemisphaerica | exon |
| TCONS_00037928-exon-sc0001738-1510915933:16043..16137 | TCONS_00037928-exon-sc0001738-1510915933:16043..16137 | Clytia hemisphaerica | exon |
| TCONS_00037928-exon-sc0001738-1575043694:16043..16137 | TCONS_00037928-exon-sc0001738-1575043694:16043..16137 | Clytia hemisphaerica | exon |
| TCONS_00037928-exon-sc0001738-1491911889:16513..16564 | TCONS_00037928-exon-sc0001738-1491911889:16513..16564 | Clytia hemisphaerica | exon |
| TCONS_00037928-exon-sc0001738-1510915933:16513..16564 | TCONS_00037928-exon-sc0001738-1510915933:16513..16564 | Clytia hemisphaerica | exon |
| TCONS_00037928-exon-sc0001738-1575043694:16513..16564 | TCONS_00037928-exon-sc0001738-1575043694:16513..16564 | Clytia hemisphaerica | exon |
| TCONS_00037928-exon-sc0001738-1491911889:21238..21579 | TCONS_00037928-exon-sc0001738-1491911889:21238..21579 | Clytia hemisphaerica | exon |
| TCONS_00037928-exon-sc0001738-1510915933:21238..21579 | TCONS_00037928-exon-sc0001738-1510915933:21238..21579 | Clytia hemisphaerica | exon |
| TCONS_00037928-exon-sc0001738-1575043694:21238..21579 | TCONS_00037928-exon-sc0001738-1575043694:21238..21579 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001738 | supercontig | sc0001738:16043..21579 + |
Blast
BLAST of TCONS_00037928 vs. Swiss-Prot (Human)
Match: P4HTM (Transmembrane prolyl 4-hydroxylase OS=Homo sapiens GN=P4HTM PE=1 SV=2) HSP 1 Score: 111.694 bits (278), Expect = 4.944e-29 Identity = 56/133 (42.11%), Postives = 78/133 (58.65%), Query Frame = 3
Query: 3 RFMTIMFYLEKPEEGGETAFPAADNITYSDAEFRRHGYPAKDLFNLNEHCYDSNLVVKPQKRSAVAWYNHHVDANTGWLGEIDDWSLHGGCEVRKGEKWIANLWLTAPYAGEETKLSMYSAEYMEMMRDRGED 401
R+MT++FYL GGET FP ADN TY + + DL + HC NL VKPQ+ +AV WYN+ D GW+G++DD+SLHGGC V +G KWIAN W+ + + +++ E + R+ G D
Sbjct: 358 RYMTVLFYLNNVTGGGETVFPVADNRTYDEMSLIQDDV---DLRDTRRHCDKGNLRVKPQQGTAVFWYNYLPDGQ-GWVGDVDDYSLHGGCLVTRGTKWIANNWINVDPS--RARQALFQQEMARLAREGGTD 484
The following BLAST results are available for this feature:
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