TCONS_00037927 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037927
Unique NameTCONS_00037927
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length707

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037927 ID=TCONS_00037927|Name=TCONS_00037927|organism=Clytia hemisphaerica|type=transcript|length=707bp
GTAGGTTTATGACTATCATGTTTTATTTGGAGAAACCTGAAGAAGGTGGA
GAAACGGCTTTCCCTGCCGCTGATAACATCACTTATTCAGATGCTGAATT
TCGTCGACATGGTTATCCAGCAAAAGATTTATTCAACTTGAACGAACATT
GTTACGATTCAAATCTTGTTGTGAAGCCCCAGAAAAGATCAGCTGTAGCC
TGGTATAACCATCATGTTGATGCGAACACAGGCTGGTTGGGAGAGATTGA
TGATTGGTCTTTACATGGTGGTTGTGAGGTGCGCAAGGGTGAGAAATGGA
TTGCTAATTTATGGTTAACAGCTCCTTATGCCGGCGAAGAAATGAAACTG
AGTATGTATTCAGCAGAATATATGGAAATGATGAGGGATAGAGGTGAAGA
TCTATATTAAATGAACTAAAATCAATTTAGTGTAATGTGATGAACAAGAT
AATCATATTACTTAAATCTTTATAAATAATGAGTAGAATATATTAGTTta
aaattcgatgaaaataaAAGTTCGGATCGTATCTTAACTTTAAAAAAGGC
CTTTGGCACCGGAGGCGCAAACACTCCCCTTCTAATGCACCCGACAATTT
TCTTCGAGGAATACACTATAATTCTTTTCATTTCTCGATGCTAACGGAAG
TGTGGTGTCGGTCGGGTGTAGGAAATTTTATAAAAtcgggctcttccaga
aaatgtc
Run BLAST on NCBI

transcript from alignment at sc0001738:16043..17124+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037927 ID=TCONS_00037927|Name=TCONS_00037927|organism=Clytia hemisphaerica|type=transcript|length=1082bp|location=Sequence derived from alignment at sc0001738:16043..17124+ (Clytia hemisphaerica)
GTAGGTTTATGACTATCATGTTTTATTTGGAGAAACCTGAAGAAGGTGGA
GAAACGGCTTTCCCTGCCGCTGATAACATCACTTATTCAGATGCTGTAAG
TTTTCTCTTTTCCTCGATTAGCTCAAAGgttttcacactttttacaccct
tagcACTTTCTCCNTTTTCCTCGATTAGCTCAAAGTTTTTCAtacttttt
acacccttagcACTTCTCCCATCTTATTTCATTACAATTTTTACAGTGTG
CGTCTCACGCGCGTTGTATTTTGCGCAAGGCTTAAAATGGgacagatttc
gaaaaataaagatttgataGATTTagagatttgaattttttcttaaaatg
tcACCACTtctttctgaaagaaaaagaacacatcgttgatttttctattt
tttaaagagAAAGAAATATCTTAATGGTCTCTAGTGTTGGAAACTTCATC
AACTTATTTTGAATTGACAGGAATTTCGTCGACATGGTTATCCAGCAAAA
GATTTATTCAACTTGAACGAACATTGTTACGATTCAAATCTTGTTGTGAA
GCCCCAGAAAAGATCAGCTGTAGCCTGGTATAACCATCATGTTGATGCGA
ACACAGGCTGGTTGGGAGAGATTGATGATTGGTCTTTACATGGTGGTTGT
GAGGTGCGCAAGGGTGAGAAATGGATTGCTAATTTATGGTTAACAGCTCC
TTATGCCGGCGAAGAAATGAAACTGAGTATGTATTCAGCAGAATATATGG
AAATGATGAGGGATAGAGGTGAAGATCTATATTAAATGAACTAAAATCAA
TTTAGTGTAATGTGATGAACAAGATAATCATATTACTTAAATCTTTATAA
ATAATGAGTAGAATATATTAGTTtaaaattcgatgaaaataaAAGTTCGG
ATCGTATCTTAACTTTAAAAAAGGCCTTTGGCACCGGAGGCGCAAACACT
CCCCTTCTAATGCACCCGACAATTTTCTTCGAGGAATACACTATAATTCT
TTTCATTTCTCGATGCTAACGGAAGTGTGGTGTCGGTCGGGTGTAGGAAA
TTTTATAAAAtcgggctcttccagaaaatgtc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022617XLOC_022617Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037927-exon-sc0001738-1491911889:16043..16137TCONS_00037927-exon-sc0001738-1491911889:16043..16137Clytia hemisphaericaexon
TCONS_00037927-exon-sc0001738-1510915933:16043..16137TCONS_00037927-exon-sc0001738-1510915933:16043..16137Clytia hemisphaericaexon
TCONS_00037927-exon-sc0001738-1575043694:16043..16137TCONS_00037927-exon-sc0001738-1575043694:16043..16137Clytia hemisphaericaexon
TCONS_00037927-exon-sc0001738-1491911889:16513..17124TCONS_00037927-exon-sc0001738-1491911889:16513..17124Clytia hemisphaericaexon
TCONS_00037927-exon-sc0001738-1510915933:16513..17124TCONS_00037927-exon-sc0001738-1510915933:16513..17124Clytia hemisphaericaexon
TCONS_00037927-exon-sc0001738-1575043694:16513..17124TCONS_00037927-exon-sc0001738-1575043694:16513..17124Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001738supercontigsc0001738:16043..17124 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.142481	0	0	0	0	0.736999	0	0.935006	0.972979	0.237018	0	0	1.047	0	0	0.902103	0	0	3.41332	2.00123	0.6157	0	0.450459	0	4.1827e-08	0	0.34876	0.116093	0	0
Blast
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BLAST of TCONS_00037927 vs. Swiss-Prot (Human)
Match: P4HTM (Transmembrane prolyl 4-hydroxylase OS=Homo sapiens GN=P4HTM PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 4.797e-28
Identity = 56/133 (42.11%), Postives = 78/133 (58.65%), Query Frame = 3 
Query:    3 RFMTIMFYLEKPEEGGETAFPAADNITYSDAEFRRHGYPAKDLFNLNEHCYDSNLVVKPQKRSAVAWYNHHVDANTGWLGEIDDWSLHGGCEVRKGEKWIANLWLTAPYAGEEMKLSMYSAEYMEMMRDRGED 401
            R+MT++FYL     GGET FP ADN TY +    +      DL +   HC   NL VKPQ+ +AV WYN+  D   GW+G++DD+SLHGGC V +G KWIAN W+    +    + +++  E   + R+ G D
Sbjct:  358 RYMTVLFYLNNVTGGGETVFPVADNRTYDEMSLIQDDV---DLRDTRRHCDKGNLRVKPQQGTAVFWYNYLPDGQ-GWVGDVDDYSLHGGCLVTRGTKWIANNWINVDPS--RARQALFQQEMARLAREGGTD 484
The following BLAST results are available for this feature:
BLAST of TCONS_00037927 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
P4HTM4.797e-2842.11Transmembrane prolyl 4-hydroxylase OS=Homo sapiens... [more]
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