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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037926 ID=TCONS_00037926|Name=TCONS_00037926|organism=Clytia hemisphaerica|type=transcript|length=520bp
ATTAAAGCaatttcctatattttttcTATTCGTAGGTTTATGACTATCAT
GTTTTATTTGGAGAAACCTGAAGAAGGTGGAGAAACGGCTTTCCCTGCCG
CTGATAACATCACTTATTCAGATGCTGAATTTCGTCGACATGGTTATCCA
GCAAAAGATTTATTCAACTTGAACGAACATTGTTACGATTCAAATCTTGT
TGTGAAGCCCCAGAAAAGATCAGCTGTAGCCTGGTATAACCATCATGTTG
ATGCGAACACAGGCTGGTTGGGAGAGATTGATGATTGGTCTTTACATGGT
GGTTGTGAGGTGCGCAAAGGTGAAAAATGGATTGCTAATTTATGGTTAAC
AGCTCCTTATGCCGGCGAAGAAACGAAATTGAGTATGTATTCGGCAGAAT
ATATGGAAATGATGAGAGATAGAGGTGAAGATCTGTATTAAATGAACTTG
ACTTATTTTAGTGTAGTTTGATGAACAGGATAATCATATCACTTAAATCC
TTATAAATAATAAGTAGAAT Run BLAST on NCBI protein sequence of TCONS_00037926-protein >TCONS_00037926-protein ID=TCONS_00037926-protein|Name=TCONS_00037926-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
IKAISYIFSIRRFMTIMFYLEKPEEGGETAFPAADNITYSDAEFRRHGYP
AKDLFNLNEHCYDSNLVVKPQKRSAVAWYNHHVDANTGWLGEIDDWSLHG
GCEVRKGEKWIANLWLTAPYAGEETKLSMYSAEYMEMMRDRGEDLY Run BLAST on NCBI transcript from alignment at sc0001738:16012..21579+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037926 ID=TCONS_00037926|Name=TCONS_00037926|organism=Clytia hemisphaerica|type=transcript|length=5568bp|location=Sequence derived from alignment at sc0001738:16012..21579+ (Clytia hemisphaerica)
ATTAAAGCaatttcctatattttttcTATTCGTAGGTTTATGACTATCAT
GTTTTATTTGGAGAAACCTGAAGAAGGTGGAGAAACGGCTTTCCCTGCCG
CTGATAACATCACTTATTCAGATGCTGTAAGTTTTCTCTTTTCCTCGATT
AGCTCAAAGgttttcacactttttacacccttagcACTTTCTCCNTTTTC
CTCGATTAGCTCAAAGTTTTTCAtactttttacacccttagcACTTCTCC
CATCTTATTTCATTACAATTTTTACAGTGTGCGTCTCACGCGCGTTGTAT
TTTGCGCAAGGCTTAAAATGGgacagatttcgaaaaataaagatttgata
GATTTagagatttgaattttttcttaaaatgtcACCACTtctttctgaaa
gaaaaagaacacatcgttgatttttctattttttaaagagAAAGAAATAT
CTTAATGGTCTCTAGTGTTGGAAACTTCATCAACTTATTTTGAATTGACA
GGAATTTCGTCGACATGGTTATCCAGCAAAAGATTTATTCAACTTGAACG
AACATTGTTACGATTCAAATCTTGTTGTGAAGCCCCAGAAAAGATCAGCT
GTAGCCTGGTATAACCATCATGTTGATGCGAACACAGGCTGGTTGGGAGA
GATTGATGATTGGTCTTTACATGGTGGTTGTGAGGTGCGCAAGGGTGAGA
AATGGATTGCTAATTTATGGTTAACAGCTCCTTATGCCGGCGAAGAAATG
AAACTGAGTATGTATTCAGCAGAATATATGGAAATGATGAGGGATAGAGG
TGAAGATCTATATTAAATGAACTAAAATCAATTTAGTGTAATGTGATGAA
CAAGATAATCATATTACTTAAATCTTTATAAATAATGAGTAGAATATATT
AGTTtaaaattcgatgaaaataaAAGTTCGGATCGTATCTTAACTTTAAA
AAAGGCCTTTGGCACCGGAGGCGCAAACACTCCCCTTCTAATGCACCCGA
CAATTTTCTTCGAGGAATACACTATAATTCTTTTCATTTCTCGATGCTAA
CGGAAGTGTGGTGTCGGTCGGGTGTAGGAAATTTTATAAAAtcgggctct
tccagaaaatgtccgtacattgGGGGNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTttggttagcaga
ttttttgctaagttcggaacggttttgtgagcctgattcgcatcccctat
atcaaaacttatcagaggggatgtgggCAGCctagggtggaggatatatt
gtcccggcgtggggtagcgaaaaatcatcaaaatttgccttgtggggtaa
atttgctctgtctggggggtcaactgatgcttgtccggggggtaaaaccc
gttttctgggtCACTGGAAAtcgttatatcctccacccaccccccatatt
caatttttttctggccaTTCATGGTTTAGTAGAATTGAATATTCTAacct
ttagaaatttttaaatacaaaaaGCTTTATGAAATTAATATGACTGAAAT
TTGTGTAGGTATATTTCTGAATGATGAAGTTCGAATAATGACCTCACTCA
CTTAACTTACTCTTGAGTAAGTATACTTACTTTTGAGTTTTCAAGACAAT
TTGAAACctcattacactttttttataagaacatccaaaatttttgaagc
cttcagatattcttaacttttcgggttctaagcctaaaaatgttcttaac
atgtttttgtCTTCACCATgttttaagtattttttgtccattttcctgat
AAATCAAGTGTTTTCGAGTCCATAAAACCATAAAATGTttataatatttt
ggtcatcaaagccttatattcttattattattcttatttgttcttataaa
aaacatgtacttaaACTTTCACtcattttactcattttcttcCACTTGAT
TACTTTTTCAACAATCACAAAACCGCTATTAAATTCAAAtgcaatcaaaa
gttacagcctctTTTTGTCTCCGACTTTAATTTAAAGGCTCTGAagtctt
gttttttttaatgtttattttcgCACACAGTATATTACAACATGTGGTCG
TATTTGGTAATTAATTGATCGATATAAGCCCCCCGAATGAAATACTTGAA
ATACGTGAAGTTAAGTGAGATTTATATGACCTCGATAGCTTTGTTTGAAA
CGACATTTCTGATGGtaactttctttaaaaaggGTTCAATATCCATTCTA
GCGATTAACCATTCGATAATTTTCCGACAGATGCTTAGGATGCTTACAGG
CACTAACCAAGGATGCTCTTCTATAAGCATTCAAATACCATTAGAACTTA
GATTCTTGACAATCTTTCTTTCAATATCGATTCCATCCACTTTAATTTTG
CGTTTTGTTTCGATCTCACCATTCCGACACATTTCAGGTAACTCGTCCAA
AAGATTTTGAACATGTCGTTGATATGATTTTTCTGTTTCCTTGCCATCAA
ACTGAATATCAAATTCTATCTTCCGAATATTCTGCTCATTTTCAATATTG
TTAATCGGAGCTTCATCAATGTGGCTCAAATCAATCCAAAGTTTGTATTT
GAAAGTCTTATTTTCTCTCTAAATGACTTTtcttgttttacaaaatttcc
aGATCGGTTTTGGTTCTCTCACTTCATATTTTGTTATATCTTCCAGGCGA
TACTCCTatgttttgtttgattttatctTCCCAAGCAATCCCTCTTTTAT
GGCTTCCTCTAAAATGTAATCTTAAATCCTTATTGCAACATAGCATAATG
GCTGCTATAGCTACATGAAGGAATGAGAAAACAGACCATGttccaaaaaa
agatttcataatCGATGACTTGACACAAATTGTTCCAATCAAAGATGAGC
AAAACTCTAAAACCGAGACAAAAAGAAGTTTGATATAGCAAGTCACTGGA
TTTGGTTGAAGAGAAATGACGAGTTTTGGCAAGAGGGATAAAGAAGAAAG
ACAGTGAAGTAGGCAACCGATTGCCTTGTGCAAGTTGGACCTACATGAAT
GGTTTTGTCGTCACCAACAAATCAACCAGCCGTAACCAGTTGGATTGGGA
CTCACTTCAGTGAGGGGGGCCGGTGCGTTATGGATACCGTCGAGAGGAAG
GCCCCGAAACGGAACGCATTCTCTCCTGATGACCCATGAAGACTGGATCC
GGTATGCGGAGCAATGTGGCTGGCAATCACTTACCAAGGTAAGCTGTTAT
TCATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNGAACATTGTTACGATTCAAATCTTGTTG
TGAAGCCCCAGAAAAGATCAGCTGTAGCCTGGTATAACCATCATGTTGAT
GCGAACACAGGCTGGTTGGGAGAGATTGATGATTGGTCTTTGCATGGTGG
TTGTGAGGTGCGCAAAGGTGAAAAATGGATTGCTAATTTATGGTTAACAG
CTCCTTATGCCGGCGAAGAAACGAAATTGAGTATGTATTCGGCAGAATAT
ATGGAAATGATGAGAGATAGAGGTGAAGATCTGTATTAAATGAACTTGAC
TTATTTTAGTGTAGTTTGATGAACAGGATAATCATATCACTTAAATCCTT
ATAAATAATAAGTAGAAT Coding sequence (CDS) from alignment at sc0001738:16012..21579+ >TCONS_00037926 ID=TCONS_00037926|Name=TCONS_00037926|organism=Clytia hemisphaerica|type=CDS|length=1323bp|location=Sequence derived from alignment at sc0001738:16012..21579+ (Clytia hemisphaerica)
ATTAAAGCaatttcctatattttttcTATTCGTAGGTTTATGACTATCAT
GTTTTATTTGGAGAAACCTGAAGAAGGTGGAGAAACGGCTTTCCCTGCCG
CTGATAACATCACTTATTCAGATGCTGAATTTCGTCGACATGGTTATCCA
GCAAAAGATTTATTCAACTTGAACGAACATTGTTACGATTCAAATCTTGT
TGTGAAGCCCCAGAAAAGATCAGCTGTAGCCTGGTATAACCATCATGTTG
ATGCGAACACAGGCTGGTTGGGAGAGATTGATGATTGGTCTTTACATGGT
GGTTGTGAGGTGCGCAAAGGTGAAAAATGGATTGCTAATTTATGGTTAAC
AGCTCCTTATGCCGGCGAAGAAACGAAATTGAGTATGTATTCGGCAGAAT
ATATGGAAATGATGAGAGATAGAGGTGAAGATCTGTATTAAATTAAAGCa
atttcctatattttttcTATTCGTAGGTTTATGACTATCATGTTTTATTT
GGAGAAACCTGAAGAAGGTGGAGAAACGGCTTTCCCTGCCGCTGATAACA
TCACTTATTCAGATGCTGAATTTCGTCGACATGGTTATCCAGCAAAAGAT
TTATTCAACTTGAACGAACATTGTTACGATTCAAATCTTGTTGTGAAGCC
CCAGAAAAGATCAGCTGTAGCCTGGTATAACCATCATGTTGATGCGAACA
CAGGCTGGTTGGGAGAGATTGATGATTGGTCTTTACATGGTGGTTGTGAG
GTGCGCAAAGGTGAAAAATGGATTGCTAATTTATGGTTAACAGCTCCTTA
TGCCGGCGAAGAAACGAAATTGAGTATGTATTCGGCAGAATATATGGAAA
TGATGAGAGATAGAGGTGAAGATCTGTATTAAATTAAAGCaatttcctat
attttttcTATTCGTAGGTTTATGACTATCATGTTTTATTTGGAGAAACC
TGAAGAAGGTGGAGAAACGGCTTTCCCTGCCGCTGATAACATCACTTATT
CAGATGCTGAATTTCGTCGACATGGTTATCCAGCAAAAGATTTATTCAAC
TTGAACGAACATTGTTACGATTCAAATCTTGTTGTGAAGCCCCAGAAAAG
ATCAGCTGTAGCCTGGTATAACCATCATGTTGATGCGAACACAGGCTGGT
TGGGAGAGATTGATGATTGGTCTTTACATGGTGGTTGTGAGGTGCGCAAA
GGTGAAAAATGGATTGCTAATTTATGGTTAACAGCTCCTTATGCCGGCGA
AGAAACGAAATTGAGTATGTATTCGGCAGAATATATGGAAATGATGAGAG
ATAGAGGTGAAGATCTGTATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037926-exon-sc0001738-1491911889:16012..16137 | TCONS_00037926-exon-sc0001738-1491911889:16012..16137 | Clytia hemisphaerica | exon |
| TCONS_00037926-exon-sc0001738-1510915933:16012..16137 | TCONS_00037926-exon-sc0001738-1510915933:16012..16137 | Clytia hemisphaerica | exon |
| TCONS_00037926-exon-sc0001738-1575043694:16012..16137 | TCONS_00037926-exon-sc0001738-1575043694:16012..16137 | Clytia hemisphaerica | exon |
| TCONS_00037926-exon-sc0001738-1491911889:16513..16695 | TCONS_00037926-exon-sc0001738-1491911889:16513..16695 | Clytia hemisphaerica | exon |
| TCONS_00037926-exon-sc0001738-1510915933:16513..16695 | TCONS_00037926-exon-sc0001738-1510915933:16513..16695 | Clytia hemisphaerica | exon |
| TCONS_00037926-exon-sc0001738-1575043694:16513..16695 | TCONS_00037926-exon-sc0001738-1575043694:16513..16695 | Clytia hemisphaerica | exon |
| TCONS_00037926-exon-sc0001738-1491911889:21369..21579 | TCONS_00037926-exon-sc0001738-1491911889:21369..21579 | Clytia hemisphaerica | exon |
| TCONS_00037926-exon-sc0001738-1510915933:21369..21579 | TCONS_00037926-exon-sc0001738-1510915933:21369..21579 | Clytia hemisphaerica | exon |
| TCONS_00037926-exon-sc0001738-1575043694:21369..21579 | TCONS_00037926-exon-sc0001738-1575043694:21369..21579 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001738 | supercontig | sc0001738:16012..21579 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005123 | Oxoglu/Fe-dep_dioxygenase |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016491 | oxidoreductase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
Blast
BLAST of TCONS_00037926 vs. Swiss-Prot (Human)
Match: P4HTM (Transmembrane prolyl 4-hydroxylase OS=Homo sapiens GN=P4HTM PE=1 SV=2) HSP 1 Score: 112.464 bits (280), Expect = 4.568e-29 Identity = 56/133 (42.11%), Postives = 78/133 (58.65%), Query Frame = 1
Query: 34 RFMTIMFYLEKPEEGGETAFPAADNITYSDAEFRRHGYPAKDLFNLNEHCYDSNLVVKPQKRSAVAWYNHHVDANTGWLGEIDDWSLHGGCEVRKGEKWIANLWLTAPYAGEETKLSMYSAEYMEMMRDRGED 432
R+MT++FYL GGET FP ADN TY + + DL + HC NL VKPQ+ +AV WYN+ D GW+G++DD+SLHGGC V +G KWIAN W+ + + +++ E + R+ G D
Sbjct: 358 RYMTVLFYLNNVTGGGETVFPVADNRTYDEMSLIQDDV---DLRDTRRHCDKGNLRVKPQQGTAVFWYNYLPDGQ-GWVGDVDDYSLHGGCLVTRGTKWIANNWINVDPS--RARQALFQQEMARLAREGGTD 484
The following BLAST results are available for this feature:
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