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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037849 ID=TCONS_00037849|Name=TCONS_00037849|organism=Clytia hemisphaerica|type=transcript|length=690bp
GGCGACTGCACGCTTACAGAAAGATGTCTTCATGAGTGTTTATTTTCAAG
aatGACCATCCTAAGAGTAAGCGCTTCAAGTGGAGGACTAAAGAAGTAAC
TGTTGAAGAACAtcagagaaagaaaattgataggttGAAACAGGTGAATA
GTGAACAGGCACACACTATCTCAGTTTTACGCGAGAAAAATGCTTCCCTT
TCAATGACAAGTGCGAGTTACACCCACCAAAAGATGGTAGAGCAACTTGG
GCAAACGCGTTCGGCATCGTTAGTGGATGCATCCCTTTTTTCTAACGCCT
TCCATTCCGGGGACTGCGTTTTGCAAAAAGAAGAGCCCATATTCCTCGAT
GAGAGTGAATTTAAGGGATTAAAAGTCACGAATTTACCCGCCGGCTTTTT
TTGCGATGTCAAGCGATACTGGTTTCGCGATATTAATGATTCTGTTGCTG
TTAAATGCACTAAAACTGATATTTTTGGGCATCAAGGAATTTCAATCTTA
AGCCATGAACACCGGCTTCTAGTCTTTACTGGCaaacacaaaaacattgt
tcgTACCATGGGTTTGGTGGGCATAAGTGGTGTTTTGTCCCACGTTATGT
ATTACCAAGATGGAACAAGGCTCGACTTTATGATGCAAAAGTCtacattc
aaaaactttttcgttTTCAGAGAGTTAATAGAAGGTTCNN Run BLAST on NCBI transcript from alignment at sc0001726:17945..24074- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037849 ID=TCONS_00037849|Name=TCONS_00037849|organism=Clytia hemisphaerica|type=transcript|length=6130bp|location=Sequence derived from alignment at sc0001726:17945..24074- (Clytia hemisphaerica)
GGCGACTGCACGCTTACAGAAAGATGTCTTCATGAGTGTTTATTTTCAAG
GTTTGTAACTCAGTTTCTTCTCTAATTTATTATAAAGTTTATGGATTTGA
ACAACCATTTTCATATTTTATTTGCACTCATGCAAACTTCTCTCTCTCTC
TCTCTGCTGACAACACTTTTTTCCACATATTCACCCATGATGATAACCAA
GTCAAATCAAATGTAATTGCGGTATTAAATTATCATATACCGGTATATAT
TAAGGACTTGGATTACCTAATAGCTGATTGATAAACCATCAATCGACTCT
TGCAGACTTTCATAACATCGACCACTTGTTGCTTGTGATCTTTTCCCAAT
TAAAAATTATACGAAACCAATCAAATATAGCTACTTGATGATATCCATTG
ATTGACGNCTTGTGATCTTTTCCCAATGAAAAATTATACGAAACCAATCA
AATATAGCTACTTGATATCCATTGATTGACGTCCGTATAGATTTCAATAG
AGGAGGGAATATCCTATCAAAGGCATTTATGCATTAGTAGAGATGTGTAT
ACTAGACCTTCTCTTGTCGATGTTTTCGAAGAAGTCAAACAGTCAAACCC
TGGTCAAACCAGGCTCTCCCCCCCACTCGATACAATACAATCAATACATT
TTTTCAACGAAAACAATGACCAATCGATAGATTAGATATTGATTGGTTCC
GACAATGGATAGGTAATCAAGCCTATTCCAAAATCTTGAGTATCCATTGA
TCATCGATTGAATAGACCTTTTCACCTTTCCATCCGCCATATTGAATTGT
ATGCAAAAATTATGGTGGCCGAATTGCCATGGTGAAATTCCCTTAGAAAG
TATGCAAAACATATGCAAAATATAAAACTTACATGCATAATTGGCATTAT
ATTAAAGTGTAATCTTGTAGAAGAAAGATTAAATTTACTTCTCTTGAAAA
CTAAAAATAATTATTTTTACCCTACTCTTCAAAAGCACTTCAAAAAACCA
TAACATTAGACATACATGAACTCAAGCTGAAAAATCACTAGCAAAGGTAC
AAAAATAATCCTTATTCGGCTGACGATAAATTATTCTCCTGGGAATAAAA
CCGCTGATTGAAAAAAATTGCGTGTTTTGAAAGTTTGATGTGTGTACTCC
GTCTTCGTGGATTTTTTTAATGGCATGAAAACAGATAATGCTTTGTCTTT
AAGAACAAATTTCTAAAAGGCTTTTTTTGTTCTGTAAATCTTTCTTTTTG
GATTAAAAAATTCCATCTAGTTCATNAAATCACTAGCAAAGGTACAAAAA
TAATCCTTATTCGGCTGACGATAAATTATTCTCCTGGGAATAAAACCGCT
GATTGAAAAAAATTGCGTGTTTTGAAAGTTTGATGTGCGTACTCCGTCTT
CGTGGATTGAAATGATGAAATCGTTTAACATCGATCATCTTTATAATGAG
GCAATTTTTTAAACGGTTTTAATGATTATCCATTATACCTATCGATTATT
GAAACCAATCGCTATCCAATCCAGCGATTTGTTATCAATTGGTCTGATCA
AGAGCTATATCGATTGTATATATTGTATCGATTGGGAGAGTCTGGGTCAA
ATTCAATTGAAATTCAATCAAAGTCAATTGAAGTCAGGTAAGTTTATCAA
ATTGATTTTCAAAGGAATCAAAGTTGTCAATTAATAAATAAGCTTCAAAA
AATGTATATAAATCTTTCGAATATACCTTTTGCAGAACGCAATGTTACGC
TGAATAATTAATAACTCCAGCATCATCAAAACAATGAGAAGAAAAATTTA
TTACACTGTTTTACTAATTCTGCATTCATGTGTTATTGTTTTAATGCTGG
AGTTTTTAACTATTCAACATGACATCGTGAGCTGTAAAAGGTCTATTGAC
TATGGTCTTCAATTAATTTGATTGGCTTCGATTGATTATAATGATTAGGT
AACGCAGGTTGGTCCATGACAGCCCCCTTCTAATTTCGTCAGCCTTCTTT
AGAAATAGGAATAAAAGACCTTTTTCCTAATCACAATGTCATGTTCAAAT
AATTAAAAACTCCAGCATCAAAACAAAACAGGAAAAGATTTAGTTCAATA
CCCACTTTTTGTCAGTGTGTTATTGATTTGTTAATACTGGAGTTTTTTAT
TATTTAAAATGACATCATTAGGAAGAGTTCTTTTAAGAAGGTAGGAATTA
CTGGTTGAGACTTTATTTTTAAATGTGGGTAGGAGACTTAACATTTAACA
AAAGAAATATTAAGCCAGAGTCTTCAAAAAATAAATATATCATTGGAAAA
ATTAGGGCAAAAAGAGCAGCTAAAAACTGTAATATTTTACTTTCAAAAAT
ACTTCAGGGCCTATTTCTAGGCAAGAATTATTCATGTTTTTTATGGAAAT
TATCTCAACTAGTATCATCACTGAAATCTTTGGCTGACAAAAGCTTGAGA
ATGCAGGATTGAAATCAGGGTATTTTGCTCAATTGTTCAAGCCATAAAAT
TTTTGACAAGTCCGACAAAATGTTTGAATGATTTTTTTCTATTAAGCACT
TCTTTAAATCACTGTTGGCATTAAGTTTTTGTCTAAAGATGTACATTCGT
TCTTCATTTGTGTGATGGAAAGAACATGCCAAAAGCAGAAATGCTCCTGG
CTGGAAGGCTTGATTTTCATCGTCCATCATAATGAAATGATATAGATTCC
ATCATCATCATTGTACAGAAAACTTTCCACTTTGAAAGTAAAAAATACAG
AAAGTTTACAGAAAAGAATGGAATCCCCCTACTGTAAAGGAAGTGAGTAA
AGTGAGTAAGTGAAAACAAACAATCTAGGGAATTCATTTTTTTCTCATTG
TCATGAAAACTTCCAGGTTCATGGTCATTTATTAAAAACAACTCCAAATT
CCTTGTATATCTGTTTTGCCTTGTGCCATATTGGTGAAATTTGTAAGTCA
TTGTTTACCAATAACTGTTTACCAAAAATTACCTGATCAATACTACTATA
CCAAAAATTACCTTTAATACTACTATCAATATTAGCAGATTTTATTCATG
GAATATTTTTTAAAGAATAACGATTTCCTTTGGTATAGCCAAAATTAAGT
AATACTTGCTGTATTACACTAAGTACAGTTCCGAAAGTGTTCCTGTGTGA
AGAAACAAAGAAAACTATTGTATTGAATCTCCAGATAGCCATTAATTTTC
TCGCACTTTTTGGAATGAAGACTCTCCATAGGCCAGATAAGTAAACGTGG
GAAAAGACATTTACTGAGCCAAATTTTTGTTGTTGTTGTTTTAATGAGAT
CGATCGATTTAAAATCTTTTTCTGGTAAAGAATTCATACAGTGGCATGAG
ATGAAAAGTTTTTTTGGGTTCTTTTTAAAGGATCAAGCTACATAGGTACG
AGTTTGTTAAGGATGTTAATAGAATTAGAGGGTTAACTTCAAGTTTTATT
ACTATATTTTCTATCGTTTTTAAATTTACTGAGTTTCTATCATTTTTTTT
TCCTTTCAGCCATGTGGAAACAAATTAAAGGCACTCTTCACCCTGAACTT
GATGGAAATAGTAGCCGTAAGAGAAGAGTACTAGAAAAATTGAAGAAAGA
TCAGAAGGTGCTAATTACAAATTAGTAATTTTGTTCCTTTGCTATCATCT
TTAGCATACCAATTTCTGGTGACTATAAATTATTTATTTTAAATTTATAA
TTACACCAAATTGATTAATACTGCAGAAAGAGCAAAGTATATCTTATTAA
GTTTTAAGTTGTTTGTTTGTCTAATAATTCAGAAGAAAATAGAATCCATG
GTGGACGAATTGAGCGTTGAGGAAATTTTCAAACAAATTGGTGAACAGTT
ATCTTCTCAGTTTAAGGTAATTGAATAATTACTCTTATGAAATTCGACTA
TTTATTACAACTCTTCAGCAATTTTAATACAAAAGACTTCTTTCAGACTT
GAGAAACTTCATGATATGAAAAAAAAACACAACAAAATTCGATATAAAGT
CTCCTCACTTTGTTTAAAACTCTCAAAAAAATTAGCTGAGAGAATAAGGA
TGGTTTAGATGAAAAAGTACTCTATTATTTATAAGCATTAATTGTCAATT
GATTTTTGGGGAAGATTCGGTTTACATTGAATCCGCAATTATATGATGGT
CATTAGATTGTTTCTTTTCATTATTAAATCCATTTTTAATTCTTTGTCTA
ATTCTTAGTCTTAAAAATTGAAACATACACTCTCGATGGAGAGAATCTAG
CCTTTGATTTCAAACATACAAAGATAATACACCTACATACATATAATAAT
TGAGTAAAGTTTGCGTTTGGTATGAGTTTAATGGTGCACAAATCTTTTTA
GGTATCTTTGCAGCTCCAAATACCTGACATTCAAAATGGTACACAAGAGG
TGACATTTTGGATTTATATTTTCAAGCCTTAATATTGGACTTAAAATAAT
CCAAGTAGTAGGGGAAAATTCCAAGAACTTTGCTTTACCACGTCCTTTCT
TTTAAGTTGGATTTCAAACGTGTAAGAGAAAAGATTTAGGCGACTTAAAG
TTCACACTGTATTTAAAGTTTACACTGTATTTTCATTGGTTTGTGCAGTT
TTTTTCTGCTTTGAGACAGGGTCACTTAATTTAGTTTAACAAATCGAATT
TGAAATTGAGTTTCTACCACCGTATAACTCTGGTAAAAAATTTCGTGGCA
ATTTCTCTATAATTCATTTAAACGGCCTTTAAATACGATTAAAATGAAAC
TACTATTAAGTGACCTAAGTTAAAATTCTGTTTATGTATTGAAATAAGAT
GTAAATTGCTCGTTTATTCTGAATGAAAAATTTTTCAGCCTTTGTCTGAT
GTAGAAGAAAATGGAAATGATTTATCAGACAATGTCGAATTTGAACAACG
AGAGGTAAATCAGAGATATTCATATTTGTGGGAAGGCTGACGTGCGATTC
TCTTTTGTTTTGTTGATTCTGCATTCCTTTTTTTCTTATTGTAACATTTT
TAATATGATTTTCGTGTCGTTTAGGCTTTCTTTTCTTTATCAATTTAGAC
CGTATTCACAAGTTATCGTTCCGTCCTGTTCTAAAACTTAATGAAACTTA
TTGAAAAATTACAGCTGGCAGTAGAAAGACTTCATCTCGGTTCGGAACAG
AACGGAAACGTAATGGATGAACATAGTTATAAGAGAAGACATTACGATGT
CTATTTTCCATTTCGAATAGACTTTACATCACAAAAACGATTATATACAT
CTTTGCTACACAGGCTAATGAATGATGGGGAATTAGGACTGATTGTCCTC
TAATGAGGAGCTTTCATTATGAAATGGCCTATTGTCAGAAATAGGCTGAT
ACACACCTTTTGAGAATCAAAATTTGACCTTTAGTGTTGTGTGGTATGTA
AGGAGATCATAGGATGATGTATCTGGTTTTCGGGTTTAAGAGCTCAAAGT
TTTGTTTGATTTTCCAATTTGAAAATGTTTTTTCTTTTAGAATGACCATC
CTAAGAGTAAGCGCTTCAAGTGGAGGACTAAAGAAGTAACTGTTGAAGAA
CATCAGAGAAAGAAAATTGATAGGTTGAAACAGGTGAATAGTGAACAGGC
ACACACTATCTCAGTTTTACGCGAGAAAAATGCTTCCCTTTCAATGACAA
GTGCGAGTTACACCCACCAAAAGATGGTAGAGCAACTTGGGCAAACGCGT
TCGGCATCGTTAGTGGATGCATCCCTTTTTTCTAACGCCTTCCATTCCGG
GGACTGCGTTTTGCAAAAAGAAGAGCCCATATTCCTCGATGAGAGTGAAT
TTAAGGGATTAAAAGTCACGAATTTACCCGCCGGCTTTTTTTGCGATGTC
AAGCGATACTGGTTTCGCGATATTAATGATTCTGTTGCTGTTAAATGCAC
TAAAACTGATATTTTTGGGCATCAAGGAATTTCAATCTTAAGCCATGAAC
ACCGGCTTCTAGTCTTTACTGGCAAACACAAAAACATTGTTCGTACCATG
GGTTTGGTGGGCATAAGTGGTGTTTTGTCCCACGTTATGTATTACCAAGA
TGGAACAAGGCTCGACTTTATGATGCAAAAGTCTACATTCAAAAACTTTT
TCGTTTTCAGAGAGTTAATAGAAGGTTCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037849-exon-sc0001726-1575043694:24025..24074 | TCONS_00037849-exon-sc0001726-1575043694:24025..24074 | Clytia hemisphaerica | exon |
| TCONS_00037849-exon-sc0001726-1575043694:17945..18584 | TCONS_00037849-exon-sc0001726-1575043694:17945..18584 | Clytia hemisphaerica | exon |
| TCONS_00037849-exon-sc0001726-1510915933:24025..24074 | TCONS_00037849-exon-sc0001726-1510915933:24025..24074 | Clytia hemisphaerica | exon |
| TCONS_00037849-exon-sc0001726-1510915933:17945..18584 | TCONS_00037849-exon-sc0001726-1510915933:17945..18584 | Clytia hemisphaerica | exon |
| TCONS_00037849-exon-sc0001726-1491911889:24025..24074 | TCONS_00037849-exon-sc0001726-1491911889:24025..24074 | Clytia hemisphaerica | exon |
| TCONS_00037849-exon-sc0001726-1491911889:17945..18584 | TCONS_00037849-exon-sc0001726-1491911889:17945..18584 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001726 | supercontig | sc0001726:17945..24074 - |
Blast
The following BLAST results are available for this feature:
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