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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037739 ID=TCONS_00037739|Name=TCONS_00037739|organism=Clytia hemisphaerica|type=transcript|length=979bp
GGATGACAAAAACGTGCAAAGAGCTACTGGCCACAGAGGGAAAATTGTTG
AcactttttatgattctgtcAATATCTGGTAATGTTATCATGGTTTCTGG
TGTGCTGCAAGAGATTACGATTGGGTTTCTGCACCCTGGCTTTTCAAAAG
CATTCAAACTAAACAATATCAAAGGAGGTCTGGTGAAAGTATTAGATGAC
ATCAATAATAGGGATACCATTTTGAATGGCATCCGTTTGAACGTAAAACT
TGCTGACTCAGGATGCGACGAAAGCATGGCGATCGGGTCGGCAGTCGATC
TTTATAATGCGGGCGGGAAAGCAATGATTGGACTAGCCTGTTCAGTTTGT
TGTCTTTCCGCTGGCTTACTATCGACGAGTAAACAGATCCCTTTGATTTC
CTACTCCTGCTCTTCAATTGAATTATCAAATAAAGACAACTATCCATACT
TCGCGCGCACAAAACCTTTCGCGCGTACAGGACCATGGGCAACGAGAGCG
CTTGCAGCAATCACGAAAAGAATGAACTGGCGTCAAGTATGTATCATTGA
ACGTGTTCACGAAATTTATACGCTGGTATCTGAGAATCTACGAGAAGAAT
TCTTATCACAGAATTATACGGTCTACCGAGAGAGATTCTATTATGAAGAT
ACTACTTtccaagaaaaagaagaatatctAGCCAGCTTGCAAGACAGATG
TAGAGGTGACGTAACCTTATCTTTAGCGAAACTACCGTCACCGGCAAAGA
CAGCCAAACAGTGTAACTTGGACATGTTGGAGACGAGCGCGAGAGCTTCC
ATCTTTAAGATCAAGAAGTGTCGTGGTTGGTGGCCATTCCAAGTTAACCC
TGAAGACGATGATGATCCAGATCCCGTACTTGCTGGAAAAGTGGAAGCAG
AGATCGAGTTGTTAGCTAAAGAAGATGCGGAAGCAAATCCTGTTGGAAAG
AAGCGTGAAGAACCACAACCTCTcgaaaa Run BLAST on NCBI protein sequence of TCONS_00037739-protein >TCONS_00037739-protein ID=TCONS_00037739-protein|Name=TCONS_00037739-protein|organism=Clytia hemisphaerica|type=polypeptide|length=325bp
MTKTCKELLATEGKLLTLFMILSISGNVIMVSGVLQEITIGFLHPGFSKA
FKLNNIKGGLVKVLDDINNRDTILNGIRLNVKLADSGCDESMAIGSAVDL
YNAGGKAMIGLACSVCCLSAGLLSTSKQIPLISYSCSSIELSNKDNYPYF
ARTKPFARTGPWATRALAAITKRMNWRQVCIIERVHEIYTLVSENLREEF
LSQNYTVYRERFYYEDTTFQEKEEYLASLQDRCRGDVTLSLAKLPSPAKT
AKQCNLDMLETSARASIFKIKKCRGWWPFQVNPEDDDDPDPVLAGKVEAE
IELLAKEDAEANPVGKKREEPQPLE Run BLAST on NCBI transcript from alignment at sc0001702:29270..33233- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037739 ID=TCONS_00037739|Name=TCONS_00037739|organism=Clytia hemisphaerica|type=transcript|length=3964bp|location=Sequence derived from alignment at sc0001702:29270..33233- (Clytia hemisphaerica)
GGATGACAAAAACGTGCAAAGAGCTACTGGCCACAGAGGGAAAATTGTTG
ACACTTTTTATGATTCTGTCAATATCTGGTAATGTTATCATGGTTTCTGG
TGTGCTGCAAGAGATTACGATTGGGTTTCTGCACCCTGGCTTTTCAAAAG
CATTCAAACTAAACAATATCAAAGGAGGTCTGGTGAAAGTATTAGATGAC
ATCAATAATAGGGATACCATTTTGAATGGCATCCGTTTGAACGTAAAACT
TGCTGACTCAGGATGCGACGAAAGCATGGCGATCGGGTCGGCAGTCGATC
TTTATAATGCGGGCGGGAAAGCAATGATTGGACTAGCCTGTTCAGTTTGT
TGTCTTTCCGCTGGCTTACTATCGACGAGTAAACAGATCCCTTTGATTTC
CTACTCCTGCTCTTCAATTGAATTATCAAATAAAGACAACTATCCATACT
TCGCGCGCACAAAACCTTTCGCGCGTACAGGACCATGGGCAACGAGAGCG
CTTGCAGCAATCACGAAAAGAATGAACTGGCGTCAAGTATGTATCATTGA
ACGTGTTCACGAAATTTATACGCTGGTATCTGAGAATCTACGAGAAGAAT
TCTTATCACAGAATTATACGGTCTACCGAGAGAGATTCTATTATGAAGAT
ACTACTTTCCAAGAAAAAGAAGAATATCTAGCCAGCTTGCAAGACAGATG
TAGAGGTGAGGACGTCACGGCTTTTATTTTTACGCAGTAACGTCTATTAG
ACTTTTTCGAATGTTTTTTGAGTCCAGATTTTAATTTTTGACACCACTTT
AAACTTTTGAAACTCCTGCAGTAACGAATAAATCGGATTTGCATATCAGA
ACACTTGAAAGGCTTCTATTTTTCGAAAATAGTCTAAGTGGAACTCACCA
ATAAGCGGAATGAAAAATAAACGAATTCATGTAGAAAAGCGCTTTGTTAT
GCAAACGTCATTATTATCACCTCTCTTATTTGACCGAAATTCAATCACAT
CCTCCTTTTCGTCTTAAGTAGGGAGCTTATTTTGGCAGAAACTAATTTTT
CGCGAATGACAGTAAAAATCTGTTCTTTTTTGCCTTATTTGGAGCTTTTT
TTGTGAACTCAAGAAGTTATTTTGGTGAGTGAGCAAAAGCTTTATTTTTG
ACAGGAACTTTCGTCTAAATTCGCAATTAACTTTTTGTCTAAATTCGCCA
AATTCGCCAAAATTAGTTCCCACTAAGATAAGTTCCCTTAAGGTAATTCA
AAAGTCGTGAGTTTAATTTACATGCAAGCGTAATTACCACAAAGTTCGAT
GGGATTGAATTCAAAACAAAAAACATATCTATTTTTAGATTGGCCACGGT
ATGCTACTGTCCTAAGATCTTCACTTTCATATTAGTAAATTCTCAACCCT
ATGAAAAAACTACTCGCTAATTTATCACACCCCTGTACTTGAAAGTGCCA
TTTTTCATCTGAATTCCATTGTTTTTGAACCAGAAAATTCAGTGGGGATG
GAAAGAATATCACATATTTTGCAGTGAGGATTTGTTTAAATCTAATTATT
TCAGTGGGGACAAAGATTAGAGCATAATTGTCCACTGGAGACGATATTTT
GGCCAATTCTTTAATAATAATAGGAAGGGGTCTTAGTGGGTCTGTGAGAA
GGGGGTGTACTATGATAAAGTGCAATAAATAGCACACTCCTGTCTTTAGA
AATAAGTTTCATCGGGAAAATAAGGAGTCCTATAGCAGAATNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATTTCTAGT
CACTTATAATTACTCGTGTTCAGTGCTTTCGAAATACACGGCAATCCATA
TTGAATACTTTGATTCCCTAGTTTGTTCAAAAAGAAAATAAGTTAAACTT
TCGTATTAGATATTTTCAGTTTTTTAGAATTGAATTCTGATGGATATGGC
AACGTGATAAAAGTCTGGCATGGAGTCAAAAAAAAACACACGGGGTTGAC
TTTATAACACCCCTTCTCACAGACCTACTGGGACCCCTTCCCACTGGAAA
AAATGGCCAAAATACGGTCCCAAGTGGAAAATTATACTCTAATTTTTGCC
CCCACTGAAAAGACTTAGATAAGCAAATCCTCGCTTTAAAATATTGTGCT
ATGTTATCCATACCCACTGAAATTTCTGACTCAAAAACAATGGAATTCAA
ATCCCCGGCGATGAAAACCATGGGAATATCAATCACCATCGAGTTTTGGT
CTGTTATCTTTACCCCCACTGGCTGAAAAAAAATCCCACCGGGTCTGTGA
GAAGAGGGTGTTTTATATGATGATACCACCTTGAATATTATTTTCATTGG
TTGGTCAATTTTATTCTGAGAAAATAATTCTTGCTTTAATTTCTTTCTTC
CAGGTGACGTAACCTTATCTTTAGCGAAACTACCGTCACCGGCAAAGACA
GCCAAACAGTGTAACTTGGACATGTTGGAGACGAGCGCGAGAGCTTCCAT
CTTTAAGATCAAGAAGTGTCGTGGTTGGTGGCCATTCCAAGTTAACCCTG
AAGACGATGATGATCCAGATCCCGTACTTGCTGTAAGAATATCTTTATTC
ATGATATATGCACCATTGCAATGTCTTCCACGGACCCAACAGCTGATTGG
TTGAAAGTGACGTATTGGCTGATTTTACGTCACTTACAGCCAAACAGCTA
TTGGGTCCGTGATGTAATGTCAGAAGACATTGCAATGGTGCATGTCATGA
ATAGAGGTTTTTCATGTTTGGAAAGCTATGTAATTTCCGCCATTATGGAA
GCGGACGTTCGATTTGCGTAAGGGATCGCCTCTACAGATTCGAAAGTTTG
CTTCCATAATGACAGAAATTACGTAACTTAACGAAACATGAAAAAACCTC
TAGAGATTTTATGGCGATACCGATCAGAACTACAGTGGGCATCTAAAACT
CGAGGTTCCCTTCAAGGAAAAATCTCAAAATACTTTCAATCATTAAATCT
CAATGTAATTTGATTAATAGAGAAGCTTTACGATCCACAAAAATTGACAT
TTTATAATGACCCTATTTTGTGAAATTTCCCCATGATATACCCATCCTCG
TTGTTTAGCCTACCCTTGAGAACGAAAAGAGTTCAATATTGTTACCTTTC
ATATTTAATCTTTGTACAGGGAAAAGTGGAAGCAGAGATCGAGTTGTTAG
CTAAAGAAGATGCGGAAGCAAATCCTGTTGGAAAGAAGCGTGAAGAACCA
CAACCTCTCGAAAA Coding sequence (CDS) from alignment at sc0001702:29270..33233- >TCONS_00037739 ID=TCONS_00037739|Name=TCONS_00037739|organism=Clytia hemisphaerica|type=CDS|length=2925bp|location=Sequence derived from alignment at sc0001702:29270..33233- (Clytia hemisphaerica)
GGAAAAGTGGAAGCAGAGATCGAGTTGTTAGCTAAAGAAGATGCGGAAGC
AAATCCTGTTGGAAAGAAGCGTGAAGAACCACAACCTCTCGAAGTGACGT
AACCTTATCTTTAGCGAAACTACCGTCACCGGCAAAGACAGCCAAACAGT
GTAACTTGGACATGTTGGAGACGAGCGCGAGAGCTTCCATCTTTAAGATC
AAGAAGTGTCGTGGTTGGTGGCCATTCCAAGTTAACCCTGAAGACGATGA
TGATCCAGATCCCGTACTTGCTATGACAAAAACGTGCAAAGAGCTACTGG
CCACAGAGGGAAAATTGTTGACACTTTTTATGATTCTGTCAATATCTGGT
AATGTTATCATGGTTTCTGGTGTGCTGCAAGAGATTACGATTGGGTTTCT
GCACCCTGGCTTTTCAAAAGCATTCAAACTAAACAATATCAAAGGAGGTC
TGGTGAAAGTATTAGATGACATCAATAATAGGGATACCATTTTGAATGGC
ATCCGTTTGAACGTAAAACTTGCTGACTCAGGATGCGACGAAAGCATGGC
GATCGGGTCGGCAGTCGATCTTTATAATGCGGGCGGGAAAGCAATGATTG
GACTAGCCTGTTCAGTTTGTTGTCTTTCCGCTGGCTTACTATCGACGAGT
AAACAGATCCCTTTGATTTCCTACTCCTGCTCTTCAATTGAATTATCAAA
TAAAGACAACTATCCATACTTCGCGCGCACAAAACCTTTCGCGCGTACAG
GACCATGGGCAACGAGAGCGCTTGCAGCAATCACGAAAAGAATGAACTGG
CGTCAAGTATGTATCATTGAACGTGTTCACGAAATTTATACGCTGGTATC
TGAGAATCTACGAGAAGAATTCTTATCACAGAATTATACGGTCTACCGAG
AGAGATTCTATTATGAAGATACTACTTTCCAAGAAAAAGAAGAATATCTA
GCCAGCTTGCAAGACAGATGTAGAGGGAAAAGTGGAAGCAGAGATCGAGT
TGTTAGCTAAAGAAGATGCGGAAGCAAATCCTGTTGGAAAGAAGCGTGAA
GAACCACAACCTCTCGAAGTGACGTAACCTTATCTTTAGCGAAACTACCG
TCACCGGCAAAGACAGCCAAACAGTGTAACTTGGACATGTTGGAGACGAG
CGCGAGAGCTTCCATCTTTAAGATCAAGAAGTGTCGTGGTTGGTGGCCAT
TCCAAGTTAACCCTGAAGACGATGATGATCCAGATCCCGTACTTGCTATG
ACAAAAACGTGCAAAGAGCTACTGGCCACAGAGGGAAAATTGTTGACACT
TTTTATGATTCTGTCAATATCTGGTAATGTTATCATGGTTTCTGGTGTGC
TGCAAGAGATTACGATTGGGTTTCTGCACCCTGGCTTTTCAAAAGCATTC
AAACTAAACAATATCAAAGGAGGTCTGGTGAAAGTATTAGATGACATCAA
TAATAGGGATACCATTTTGAATGGCATCCGTTTGAACGTAAAACTTGCTG
ACTCAGGATGCGACGAAAGCATGGCGATCGGGTCGGCAGTCGATCTTTAT
AATGCGGGCGGGAAAGCAATGATTGGACTAGCCTGTTCAGTTTGTTGTCT
TTCCGCTGGCTTACTATCGACGAGTAAACAGATCCCTTTGATTTCCTACT
CCTGCTCTTCAATTGAATTATCAAATAAAGACAACTATCCATACTTCGCG
CGCACAAAACCTTTCGCGCGTACAGGACCATGGGCAACGAGAGCGCTTGC
AGCAATCACGAAAAGAATGAACTGGCGTCAAGTATGTATCATTGAACGTG
TTCACGAAATTTATACGCTGGTATCTGAGAATCTACGAGAAGAATTCTTA
TCACAGAATTATACGGTCTACCGAGAGAGATTCTATTATGAAGATACTAC
TTTCCAAGAAAAAGAAGAATATCTAGCCAGCTTGCAAGACAGATGTAGAG
GGAAAAGTGGAAGCAGAGATCGAGTTGTTAGCTAAAGAAGATGCGGAAGC
AAATCCTGTTGGAAAGAAGCGTGAAGAACCACAACCTCTCGAAGTGACGT
AACCTTATCTTTAGCGAAACTACCGTCACCGGCAAAGACAGCCAAACAGT
GTAACTTGGACATGTTGGAGACGAGCGCGAGAGCTTCCATCTTTAAGATC
AAGAAGTGTCGTGGTTGGTGGCCATTCCAAGTTAACCCTGAAGACGATGA
TGATCCAGATCCCGTACTTGCTATGACAAAAACGTGCAAAGAGCTACTGG
CCACAGAGGGAAAATTGTTGACACTTTTTATGATTCTGTCAATATCTGGT
AATGTTATCATGGTTTCTGGTGTGCTGCAAGAGATTACGATTGGGTTTCT
GCACCCTGGCTTTTCAAAAGCATTCAAACTAAACAATATCAAAGGAGGTC
TGGTGAAAGTATTAGATGACATCAATAATAGGGATACCATTTTGAATGGC
ATCCGTTTGAACGTAAAACTTGCTGACTCAGGATGCGACGAAAGCATGGC
GATCGGGTCGGCAGTCGATCTTTATAATGCGGGCGGGAAAGCAATGATTG
GACTAGCCTGTTCAGTTTGTTGTCTTTCCGCTGGCTTACTATCGACGAGT
AAACAGATCCCTTTGATTTCCTACTCCTGCTCTTCAATTGAATTATCAAA
TAAAGACAACTATCCATACTTCGCGCGCACAAAACCTTTCGCGCGTACAG
GACCATGGGCAACGAGAGCGCTTGCAGCAATCACGAAAAGAATGAACTGG
CGTCAAGTATGTATCATTGAACGTGTTCACGAAATTTATACGCTGGTATC
TGAGAATCTACGAGAAGAATTCTTATCACAGAATTATACGGTCTACCGAG
AGAGATTCTATTATGAAGATACTACTTTCCAAGAAAAAGAAGAATATCTA
GCCAGCTTGCAAGACAGATGTAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037739-exon-sc0001702-1575043694:32529..33233 | TCONS_00037739-exon-sc0001702-1575043694:32529..33233 | Clytia hemisphaerica | exon |
| TCONS_00037739-exon-sc0001702-1575043694:29952..30130 | TCONS_00037739-exon-sc0001702-1575043694:29952..30130 | Clytia hemisphaerica | exon |
| TCONS_00037739-exon-sc0001702-1575043694:29270..29364 | TCONS_00037739-exon-sc0001702-1575043694:29270..29364 | Clytia hemisphaerica | exon |
| TCONS_00037739-exon-sc0001702-1510915933:32529..33233 | TCONS_00037739-exon-sc0001702-1510915933:32529..33233 | Clytia hemisphaerica | exon |
| TCONS_00037739-exon-sc0001702-1510915933:29952..30130 | TCONS_00037739-exon-sc0001702-1510915933:29952..30130 | Clytia hemisphaerica | exon |
| TCONS_00037739-exon-sc0001702-1510915933:29270..29364 | TCONS_00037739-exon-sc0001702-1510915933:29270..29364 | Clytia hemisphaerica | exon |
| TCONS_00037739-exon-sc0001702-1491911889:32529..33233 | TCONS_00037739-exon-sc0001702-1491911889:32529..33233 | Clytia hemisphaerica | exon |
| TCONS_00037739-exon-sc0001702-1491911889:29952..30130 | TCONS_00037739-exon-sc0001702-1491911889:29952..30130 | Clytia hemisphaerica | exon |
| TCONS_00037739-exon-sc0001702-1491911889:29270..29364 | TCONS_00037739-exon-sc0001702-1491911889:29270..29364 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001702 | supercontig | sc0001702:29270..33233 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00037739 vs. Swiss-Prot (Human)
Match: FR1L6 (Fer-1-like protein 6 OS=Homo sapiens GN=FER1L6 PE=2 SV=2) HSP 1 Score: 81.2629 bits (199), Expect = 1.058e-16 Identity = 43/97 (44.33%), Postives = 58/97 (59.79%), Query Frame = 3
Query: 693 DRCRGDVTLSLAKLPSPAKTAKQCNLDMLETSA---RASIFKIKKCRGWWPFQVNPEXXXXXXXVLAGKVEAEIELLAKEDAEANPVGKKREEPQPL 974
D G + ++L P AK+AK C+L E ++ + SIF+ K+ RGWWPF + E L GKVEAE L+ E+AE NPVGK R+EP+PL
Sbjct: 1705 DDFLGTLEMNLNSFPRAAKSAKACDLAKFENASEETKISIFQQKRVRGWWPFSKSKE--------LTGKVEAEFHLVTAEEAEKNPVGKARKEPEPL 1793
The following BLAST results are available for this feature:
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