TCONS_00037602 (transcript) - C. hemisphaerica

Overview
NameTCONS_00037602
Unique NameTCONS_00037602
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3345

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00037602 ID=TCONS_00037602|Name=TCONS_00037602|organism=Clytia hemisphaerica|type=transcript|length=3345bp
CAGGCATTCATTTCtgttttcctttgtttgatCTTATCcatattttttcc
tctttttttcatcaattttgctgtttttctcTTTCAGAACTATgtgaaaa
tacaaaaggaagtATGTGGAGCAGACAATTAACTAGGCTATGCCGTCAAC
CCCCGATCAAGAAGGGAAGACAGCTAGTCCCTAGAAAAGAAGTTGTTATC
AGATTTCAAAGTTACactaaacaaaatttaacataCAGCTTGAAGTATAT
TTTGGGATTACTTGGAGGAACTTTGACAGGCGGTTTATctgtttatttga
tttttaaccatAATGTGGACGTGGAAGCATCTCAACCAAAGAAAAAACTT
GTGATACTTGGCTCTGGTTGGGGTGCAGTCAGTCTCATCAAAAGTCTAAA
ACCTGATTTATATGACATCAAAGTAGTTTCGCCCACAAATTATTTTCTAT
TCACACCTTTGCTACCATCTGTTACTGTTGGCACTGTGGATGGACGCAGC
CTCACAGAACCAATCAGAAAGATTTTATCGAAGAAACAAAAGGAGGGAAA
TTATGAATATTTNTAGCCTTACAGAACCAATCAGAAAGATTTTATCGAAG
AAACAAAAGGAGGGAAATTATGAATATTTTGAAGCCCATTGCATTGATGT
TGATACTGAGAAAAATCAAGTTATTTGTGCTGATAAATCAGTGGCTGTTG
GATCGAAAACAAACACGTACAACAATCCTGATATCAAGAAATATTCTCAT
AAACTAAAAAATGTTCAACAAGCTCGAGAAGTCCGCAAACATATTGTTGA
TTCTTTGGAAACTGCCATTTTGCCAGGTCAATGtgaagaagaaatgaaaa
ggatgttgagttttgttgTCGTTGGTGGTGGGCCTACAGGAGTTGAATTT
GCTGGAGAATTGCGTGATTATCTTgatgatttgaaaaatgtttatcCTCA
ACAAGTTATTGATAATATGTGCATAACTTTGGTGAATAGCCATTACAAAG
TGTTGAGTATGTATGACCAACAGATAAGCAATTTCACTGAACAGAAATTC
AAATCAGACGGTATCAACACGATTGGTAATTCTTATGTAGTTGGAATGGA
TCCAAAGAATATTAAAATCCAAAACAAGAAGACTAAAGAGATAACAGTTT
TACCGTATGGTTTATGTGTTTGGGCTGCTGGTATTGCACCTAGAGACATA
ACTAAGGCGCTGATCAAAAGAATGCCTGCACAAAACAACAGAAATGCATT
GGTCACAGATGGCTACATGAAATTGAAAGGAAGCAATAATATTTTTGGTA
TCGGAGACTGTTCTACTGTCGAGTTTACTAAGCTAATGTATCAAGTTGAA
CAGTTATTCAAAGAAGCTGATCTTGATGGGACTGGTCAGCTATCTCTCTC
TGAATTCTCAGTATTTTTGGAGACAGCAAAGAAGAAATATCCTGAAATGA
CGCAACATTTGACCAAGTTACAAAAATCAGTTGATAAGACATTCAGCTTG
ATGGATACTGACCATAATGAGCGATTAAGTCTTGAAGAGTTTACTCTTTT
CTTGAAGGATGTTGACAGCAAATTAAAAGCCTACCCTGCTACAGCCCAAG
TCGCTTCTCAACAAGGCAAATATCTCGGAAAACTTCTCTCGGCACATTCT
GAGATcactgaaaatgaagatttctcGGTTTGCAAACCCTTCGAATACAG
TCATTTGGGGAGTTTTGCTTATGTTGGGGGAGAAGCAGCTGTGTTGGAGC
TCCCTATCATTGGTACTTTCACCAACTTTGCCACCATTTGGTTATGGAGA
GGTGCCTACTTAAACCAAGCTGTTAGTTGGAGAATGCAGTGCCTTATTGG
GTTTGATTGGGTTAAAGCACACGTTTTTGGTCGAGATACTTCAGAAATTT
AAATTAGACCTGATTTATCTTCTTCTTTatattttgtcttattttattta
ttctttaggGTATTTAGATATCTCTATATATTGGGGCTTACAATGATAAG
GGTTTTTTAGGGGTTTTCTTTTGTATTATTTGCTAATTTAAGAgaagaat
ttattttggtaAATGGAATTTTATGTGCATTGTTGTGATTATTTTATTGA
AatcatttgttttgttttgtagaTATTTTGTATATTTATCATCTTTAACA
TAGCATTTATAGAtaaattatttgttttattgCTAGCACACTTTCGCTGT
ACCTATTCGAAAACATCTTACTGAAAAAATATTACTGATAGTTTGATAGC
ATTTCTAGTCTAGGGAATCTTCATTCTGAACATTTTTAATCTCTAATAAT
ATTTTGTGTGTGGAAGATCAAAGTATGATTTATCAGAGGTGAGTATTAGA
CTACCCAGGTATCCCAAGCCAATTCTTACCAAGCTCTATACTTTTCCTGT
ATACGTACCCATATCATTTTAATTGTCAGCAATACCAATTGTAGACCCTT
AGTAATCCATGCAGAAGACAAAGGGTTCGATTCTCACTCGGTTCTGTGGT
GCATTTGGCAAGTGATTGTAGCAACGCCCGGGTCAACCAATGTCATGTTA
AGGGAACTGGGTACCAAAAGATACATCAGTGTGGGGAATAATGCCAACTG
CATCTTAGGTTGTGATGTTGCTCACTTGTTCAAGCTTATTTGAGTTGCAC
AACCAATAAAGCACGACTCTAATGGTGTCTCAaggatacaccttttcgac
cgtagccgccaattgccgcacgggcatttctttgtccgctttatcccact
aaaaccgtccagTCCtattttcgcacctatagaccatagaaaaatgtgtc
aaaaaaaggattgaatcgagtttagggggataattaaataattaagtgac
aCGCACCTGaatacggtcgaaaaggtgtattaatgGTGGCTTTTCTTTGT
TAAGAACAACGGGGGTTTCGCCCGAAAATGCCTGCAGATAATCAGCTAAC
CAAAAGGAAGTGTAATATATTATTGACATTTAATTTATTATATTAAATCA
CAACATATCCATAGTATTAATGTATTATGTTAAATCATATCATATATCTT
TATTATAATATTGTATTATCTTATCACGGCATACACTATTTACACATTTG
CaaacaaatgttttgaaaacggTTCACCTTGGTATTCCTCTAAAAACATT
AACATACAAttcgctaccttaattcaaaaggggttAAGTTAAGACGGTTC
ATAACTTCATACTGAAGCTCTGATAAAAGTgatgtttaattcaaaagagg
ccaaagtccatcatctttttacaatagaagggcctaagtccatcatctCT
TTACAataaagggcctaagtccaccaaaataagtttgttTAAGTT
Run BLAST on NCBI

transcript from alignment at sc0001666:11610..17191+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00037602 ID=TCONS_00037602|Name=TCONS_00037602|organism=Clytia hemisphaerica|type=transcript|length=5582bp|location=Sequence derived from alignment at sc0001666:11610..17191+ (Clytia hemisphaerica)
CAGGCATTCATTTCtgttttcctttgtttgatCTTATCcatattttttcc
tctttttttcatcaattttgctgtttttctcTTTCAGAACTATgtgaaaa
tacaaaaggaagtATGTGGAGCAGACAATTAACTAGGCTATGCCGTCAAC
CCCCGATCAAGAAGGGAAGACAGCTAGTCCCTAGAAAAGAAGTTGTTATC
AGATTTCAAAGTTACactaaacaaaatttaacataCAGCTTGAAGTATAT
TTTGGGATTACTTGGAGGAACTTTGACAGGCGGTTTATctgtttatttga
tttttaaccatAATGTGGACGTGGAAGCATCTCAACCAAAGAAAAAACTT
GTGATACTTGGCTCTGGTTGGGGTGCAGTCAGTCTCATCAAAAGTCTAAA
ACCTGATTTATATGACATCAAAGTAGTTTCGCCCACAAATTATTTTCTAT
TCACACCTTTGCTACCATCTGTTACTGTTGGCACTGTGGATGGACGCAGC
CTCACAGAACCAATCAGAAAGATTTTATCGAAGAAACAAAAGGAGGGAAA
TTATGAATATTTNTAGCCTTACAGAACCAATCAGAAAGATTTTATCGAAG
AAACAAAAGGAGGGAAATTATGAATATTTTGAAGCCCATTGCATTGATGT
TGATACTGAGAAAAATCAAGTTATTTGTGCTGATAAATCAGGTTGAGTTT
CATGtctttatctttttcatttgttgagTTCCCTTCACTTCGCAGACACC
CTTAGATTATAAAGCCTACCCTGTTTTGGATTTTGTTGATCTAATTGATT
TGACCACGTTATTGTTATTGCTGTGTAAATTGAttggctgttttttttct
ctttgaaGCGTAGCATgatcaaaatttacattttgttAGATATTCAAAGC
GACAGCCCTGAGTTCAAGATTGACTATGACATTTTGGTAGTGGCTGTTGG
ATCGAAAACAAACACGTACAACAATCCTGATATCAAGAAATATTCTCATA
AACTAAAAAATGTTCAACAAGCTCGAGAAGTCCGCAAACATATTGTTGAT
TCTTTGGAAACTGCCATTTTGCCAGGTCAATGtgaagaagaaatgaaaag
gatgttgagttttgttgTCGTTGGTGGTGGGCCTACAGGTTTGTTGTGGT
TCTTGCCAATCAACTTTTTCCTATTAGCGCTTTTATACTTAATATTTTAG
ACAGTCATCTGATTTCCTCCTAGCTTACATTGTTCTATTCTACTTAAATT
CTACTATTCTATTCTACTTTTCTACTTTTTCAGGAGTTGAATTTGCTGGA
GAATTGCGTGATTATCTTgatgatttgaaaaatgtttatcCTCAACAAGT
TATTGATAATATGTGCATAACTTTGGTGAATAGCCATTACAAAGTGTTGA
GTATGTATGACCAACAGGTTTGTAAACATACCAATTTAAAGTTCTTGTGT
CCATGACTGAATATCGTCCCATTGAAGTATAGAAAGATGCTTctctgtct
caaaattctgcataatttaccaaaattttataaacatgtgctaattttct
ttttgaaatccaTTGTCTAAAACAAAAAACCTTGCTTTTACCACTGACAT
ACATAAGTCTTTAGCTTTCCAATTACGTCATAGCCATTTGGTcccaaaat
catttttcatatAATAGCCTTTGAGTGgactttttaaagaaaactgcTCA
TACCTGTCATTTAATCTATCAAAAAACTATATTGTCAGAGATTActtcat
tttcattcagtttAATCTAATACTGCTCAAGTTTCTTCAAAAATGTCTTA
CCAACTTCTTTTCAGATAAGCAATTTCACTGAACAGAAATTCAAATCAGA
CGGTATCAACACGATTGGTAATTCTTATGTAGTTGGAATGGATCCAAAGA
ATATTAAAATCCAAAACAAGAAGACTAAAGAGATAACAGTTTTACCGTAT
GGTTTATGTGTTTGGGCTGCTGGTATTGCACCTAGAGACATAACTAAGGC
GCTGATCAAAAGAATGCCTGCACAAAACAACAGGTTAAACAATTATATTT
GCTCTGTCTTTATTTAAACAGCCATCCTGTCATCAAATACCACTTATACT
AGCATTGTTTTACTCaaacttttttggacctaccccggtggaggtcctat
aaattaacctttgtccgttcgttcgtttgttattagctttcctcatgatt
ggctcattagttttttctgattttttgcgcaaagatgcataactataaac
cctcgaatgtgacggagcccgattttcaaaaaaaaaattttttgggcaaa
tttgggccaaaaaacggctaaaaacgggttttttggacttcgtgaaaaat
taggtcgttaattttttctgattttttgcatggaagtagggtaccatcgt
aagtaaaagatggcttaagcagatttttgcaaaaaaaatttgttggctca
aaaaacgcatgtttatctataagaatcactattaataagcatacatcaat
gttcttagtcaaattactcaatttttttatgagatagatgtttttttttt
gctcaggagggcttacttttacaaaatatgtgtgtttagacatgaaattt
tggttgcttggcgtgtttttataggaaaataggccaaattcgatattctt
ttataagcacattatcaattacttaggtattagctcttctcgagattggc
tctttcattctttatgattttttgagcaaagatgcataactataaaccct
cgaatctGACAAAAGCGACATACATCTTTAGTTATACTGTTTCTTATTAG
AAATGCATTGGTCACAGATGGCTACATGAAATTGAAAGGAAGCAATAATA
TTTTTGGTATCGGAGACTGTTCTACTGTCGAGTTTACTAAGCTAATGTAT
CAAGTTGAACAGTTATTCAAAGAAGCTGATCTTGATGGGACTGGTCAGCT
ATCTCTCTCTGAATTCTCAGGTTAGAGGGAAATATTTTGTACTGTACTAG
AACACTAGAAGTACAATACAGTTTAGCCTTACCCAAACAATACCCTCATT
TATCTATCTTATTTggttttgtttggttttgttgttcAATGATTTAATGC
agaaccactgacctttatatatccctggaccaaaaaattggtaccctaat
cgCGACACTACTCAAAAGTggtgaaaatgcatcgagagcgctggatctac
tttccctcaaaTACTTTTTATGATAGCGCTGTTatgacgttaatttttaa
aatttcaatggtttcttctcgggtaccaattccaaaaaaaactccaatca
aagatggtggatatagcttggtccatgGATATTTAATGGTCAGTGTGCAG
AACCTGTTATGACAAAGGTTTTTAAACAATTCTTTAACGTTAAGCAATGT
CAAGTACTAACACCTCTTCTTTTCAGTATTTTTGGAGACAGCAAAGAAGA
AATATCCTGAAATGACGCAACATTTGACCAAGTTACAAAAATCAGTTGAT
AAGTATGATCTTGTAATTTAGcctgttttgattttattgtcTTTAATCTG
AAAACGTTGAACTGCTGACCTCAATGTATTTATAATGAATTTTGGCCACC
ATAACGGCTCTCCTTTGACTAGACGCAATAACCTGCAGAAAGTTGCTATC
AGAGTGAAATGGCTTAAAGAGATCTTCTAAATGAGTCTTGGATGTTCTAA
AGAATCTCACTTCTTGCTTTTCAGGACATTCAGCTTGATGGATACTGACC
ATAATGAGCGATTAAGTCTTGAAGAGTTTACTCTTTTCTTGAAGGATGTT
GACAGCAAATTAAAAGCCTACCCTGCTACAGCCCAAGTCGCTTCTCAACA
AGGCAAATATCTCGGAAAACTTCTCTCGGCACATTCTGAGATcactgaaa
atgaagatttctcGGTTTGCAAACCCTTCGAATACAGTCATTTGGGGAGT
TTTGCTTATGTTGGGGGAGAAGCAGCTGTGTTGGAGCTCCCTATCATTGG
TACTTTCACCAACTTTGCCACCATTTGGTTATGGAGAGGTGCCTACTTAA
ACCAAGCTGTTAGTTGGAGAATGCAGTGCCTTATTGGGTTTGATTGGGTT
AAAGCACACGTTTTTGGTCGAGATACTTCAGAAATTTAAATTAGACCTGA
TTTATCTTCTTCTTTatattttgtcttattttatttattctttaggGTAT
TTAGATATCTCTATATATTGGGGCTTACAATGATAAGGGTTTTTTAGGGG
TTTTCTTTTGTATTATTTGCTAATTTAAGAgaagaatttattttggtaAA
TGGAATTTTATGTGCATTGTTGTGATTATTTTATTGAAatcatttgtttt
gttttgtagaTATTTTGTATATTTATCATCTTTAACATAGCATTTATAGA
taaattatttgttttattgCTAGCACACTTTCGCTGTACCTATTCGAAAA
CATCTTACTGAAAAAATATTACTGATAGTTTGATAGCATTTCTAGTCTAG
GGAATCTTCATTCTGAACATTTTTAATCTCTAATAATATTTTGTGTGTGG
AAGATCAAAGTATGATTTATCAGAGGTGAGTATTAGACTACCCAGGTATC
CCAAGCCAATTCTTACCAAGCTCTATACTTTTCCTGTATACGTACCCATA
TCATTTTAATTGTCAGCAATACCAATTGTAGACCCTTAGTAATCCATGCA
GAAGACAAAGGGTTCGATTCTCACTCGGTTCTGTGGTGCATTTGGCAAGT
GATTGTAGCAACGCCCGGGTCAACCAATGTCATGTTAAGGGAACTGGGTA
CCAAAAGATACATCAGTGTGGGGAATAATGCCAACTGCATCTTAGGTTGT
GATGTTGCTCACTTGTTCAAGCTTATTTGAGTTGCACAACCAATAAAGCA
CGACTCTAATGGTGTCTCAaggatacaccttttcgaccgtagccgccaat
tgccgcacgggcatttctttgtccgctttatcccactaaaaccgtccagT
CCtattttcgcacctatagaccatagaaaaatgtgtcaaaaaaaggattg
aatcgagtttagggggataattaaataattaagtgacaCGCACCTGaata
cggtcgaaaaggtgtattaatgGTGGCTTTTCTTTGTTAAGAACAACGGG
GGTTTCGCCCGAAAATGCCTGCAGATAATCAGCTAACCAAAAGGAAGTGT
AATATATTATTGACATTTAATTTATTATATTAAATCACAACATATCCATA
GTATTAATGTATTATGTTAAATCATATCATATATCTTTATTATAATATTG
TATTATCTTATCACGGCATACACTATTTACACATTTGCaaacaaatgttt
tgaaaacggTTCACCTTGGTATTCCTCTAAAAACATTAACATACAAttcg
ctaccttaattcaaaaggggttAAGTTAAGACGGTTCATAACTTCATACT
GAAGCTCTGATAAAAGTgatgtttaattcaaaagaggccaaagtccatca
tctttttacaatagaagggcctaagtccatcatctCTTTACAataaaggg
cctaagtccaccaaaataagtttgttTAAGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022358XLOC_022358Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00037602-exon-sc0001666-1491911889:11610..12300TCONS_00037602-exon-sc0001666-1491911889:11610..12300Clytia hemisphaericaexon
TCONS_00037602-exon-sc0001666-1510915933:11610..12300TCONS_00037602-exon-sc0001666-1510915933:11610..12300Clytia hemisphaericaexon
TCONS_00037602-exon-sc0001666-1575043694:11610..12300TCONS_00037602-exon-sc0001666-1575043694:11610..12300Clytia hemisphaericaexon
TCONS_00037602-exon-sc0001666-1491911889:12550..12747TCONS_00037602-exon-sc0001666-1491911889:12550..12747Clytia hemisphaericaexon
TCONS_00037602-exon-sc0001666-1510915933:12550..12747TCONS_00037602-exon-sc0001666-1510915933:12550..12747Clytia hemisphaericaexon
TCONS_00037602-exon-sc0001666-1575043694:12550..12747TCONS_00037602-exon-sc0001666-1575043694:12550..12747Clytia hemisphaericaexon
TCONS_00037602-exon-sc0001666-1491911889:12893..13026TCONS_00037602-exon-sc0001666-1491911889:12893..13026Clytia hemisphaericaexon
TCONS_00037602-exon-sc0001666-1510915933:12893..13026TCONS_00037602-exon-sc0001666-1510915933:12893..13026Clytia hemisphaericaexon
TCONS_00037602-exon-sc0001666-1575043694:12893..13026TCONS_00037602-exon-sc0001666-1575043694:12893..13026Clytia hemisphaericaexon
TCONS_00037602-exon-sc0001666-1491911889:13425..13642TCONS_00037602-exon-sc0001666-1491911889:13425..13642Clytia hemisphaericaexon
TCONS_00037602-exon-sc0001666-1510915933:13425..13642TCONS_00037602-exon-sc0001666-1510915933:13425..13642Clytia hemisphaericaexon
TCONS_00037602-exon-sc0001666-1575043694:13425..13642TCONS_00037602-exon-sc0001666-1575043694:13425..13642Clytia hemisphaericaexon
TCONS_00037602-exon-sc0001666-1491911889:14410..14579TCONS_00037602-exon-sc0001666-1491911889:14410..14579Clytia hemisphaericaexon
TCONS_00037602-exon-sc0001666-1510915933:14410..14579TCONS_00037602-exon-sc0001666-1510915933:14410..14579Clytia hemisphaericaexon
TCONS_00037602-exon-sc0001666-1575043694:14410..14579TCONS_00037602-exon-sc0001666-1575043694:14410..14579Clytia hemisphaericaexon
TCONS_00037602-exon-sc0001666-1491911889:15036..15111TCONS_00037602-exon-sc0001666-1491911889:15036..15111Clytia hemisphaericaexon
TCONS_00037602-exon-sc0001666-1510915933:15036..15111TCONS_00037602-exon-sc0001666-1510915933:15036..15111Clytia hemisphaericaexon
TCONS_00037602-exon-sc0001666-1575043694:15036..15111TCONS_00037602-exon-sc0001666-1575043694:15036..15111Clytia hemisphaericaexon
TCONS_00037602-exon-sc0001666-1491911889:15334..17191TCONS_00037602-exon-sc0001666-1491911889:15334..17191Clytia hemisphaericaexon
TCONS_00037602-exon-sc0001666-1510915933:15334..17191TCONS_00037602-exon-sc0001666-1510915933:15334..17191Clytia hemisphaericaexon
TCONS_00037602-exon-sc0001666-1575043694:15334..17191TCONS_00037602-exon-sc0001666-1575043694:15334..17191Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001666supercontigsc0001666:11610..17191 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.56678	1.417	0	0	1.74594	2.48123	2.61916	1.70511	2.93509	1.82008	4.4486	3.3116	3.56353	3.83624	2.90637	2.13858	3.4887	1.67162	2.80432	2.82395	1.85438	2.04965	1.30583	2.21297	3.71935	3.13188	2.44494	0.00146064	2.42918	1.77394
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00037602 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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