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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00037197 ID=TCONS_00037197|Name=TCONS_00037197|organism=Clytia hemisphaerica|type=transcript|length=487bp
GTCGTGCGGAAGCTTTTGATCGCGCGTACACCGCCTGGTCAAGAAACACA
AGACCTACCGCCAGTCTATGATACGGAACAtgagaaaatacaaaaagaac
AATTGATCAAACTTTTCAATCGAACTCCTGAAGAGGTTGAAGAGGAGGAA
GTCCTGGTACAACAGCTCAAGAAAATCAAATCTCATAAAAAGGAGCGCGA
AAAGAAGTTGCACAACTTCAACAAATTGATTACAACAGCCGAAAACAAAN
AGGAGCGCGAAATGAAGTTGCACAACTTCAACAAATTGATTACAACAGCC
GAAAACAAACCGTCTTCTCTATCGCTTCTTGGATCCAATGACAGGAGTGG
CATTTATCGTCACATCACACGACAGCTGATGGACACATTATTAAGAAAGa
gaagaaactgaaaacaaAGAACAAGAAACGGCGCGCCGAGTCTACCACAA
CTTCCAGCGCATCGAGCGCGACTTCCACCACAAATAN Run BLAST on NCBI transcript from alignment at sc0001590:36765..42954+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00037197 ID=TCONS_00037197|Name=TCONS_00037197|organism=Clytia hemisphaerica|type=transcript|length=6190bp|location=Sequence derived from alignment at sc0001590:36765..42954+ (Clytia hemisphaerica)
GTCGTGCGGAAGCTTTTGATCGCGCGTACACCGCCTGGTCAAGAAACACA
AGACCTACCGCCAGTCTATGATACGGAACAtgagaaaatacaaaaagaac
AATTGATCAAACTTTTCAATCGAACTCCTGAAGAGGTTAGTCACAGAGCt
taggaatttttgaaaaataatttttttgacttttcaaaacTAGGTCGGCT
CAAAACCAGCttatatattttcataaaaatgctCTTTCATATGTTAGATA
CGAGAGTTTCGGAAACTCATTCCTTTTGGAAATATAGACCGTCAAAGTTA
GGCCCCTTTTAGGAGCACCCTGTTCCTTTTGTGTGTCGATACGATACCCA
TACATCGTCAATACTGTACATCTTGACTTTTCGTACTTTAAATATTTTAT
GGAATTAGCTAGACTAGGGTTACCAAGTTAGTTAATTGGGTCGGCCAGAA
AAGCACTTTTCATAGCCTACGAAAGGTGACTTTTTTTTATATCTTGTTAT
ATTACAAGCTTTCTGTACATATATAATGTGAAGTGATGAAGTAATAAAGT
ACCTGAACAGCAGTAAATTCTTCGTGAAAAACAGTTCCTTCAGCAAAGaa
tgcttatacttactatctCAACAAAGTTTTTGCTTCATTAAGGTTGAAGA
GGAGGAAGTCCTGGTACAACAGCTCAAGAAAATCAAATCTCATAAAAAGG
AGCGCGAAAAGAAGTTGCACAACTTCAACAAATTGATTACAACAGCCGAA
AACAAANAGGAGCGCGAAATGAAGTTGCACAACTTCAACAAATTGATTAC
AACAGCCGAAAACAAACCGTCTTCTCTATCGCTTCTTGGATCCAATGACA
GGAGTGGCATTTATCGTCACATCACACGACAGCTGATGGACACATTATTA
AGTGAGTCTTCCCCTCCCCTCCTTTGTTACTTAAGAAATAATTCTCTCTT
GTTACGTTCTATGTATCTACCAATCTCTCCAACCGCTCTGATTGGTTCAA
AACTGagttaaaaaaagttataaaccTTTATCGCACAACAATCTTTCTTA
GAGTATATGGCCCCTAAAACGGCGttattaaaatgaggattctgactttt
agattttacagaattagacgatttttgtttactttgaaaaaatgacggtt
atacttaaaaatgagtatGTTTTGGTTTGAGACAGctaataacatatttg
cgtctaaaggaaacgggcttttccaaaaaaaaccgtatacgccctgttga
ggaggtccatttccgttccaagggggtaaggtttgatgtgtggcggaatt
ccacagggagatacaaaaatctgtcaaaaataactggaattccagggggg
gAGGCCTTTTAAATcgtactaaaattcagaattccagaggggttcaAACC
TGAAATTGTCTGGAATTCCAGAGGGTTACAtcatttccagccacaaaatg
atggacctcctcaacagggagtatacggtttttttctggaaaagcccaat
attaCGTCTGAAGGAAATAATTATTACAACgcaaaaattagataaaaatg
gCATATAGTCCactaggaaactttctacacctaatgcagATACTTTTGTG
ACTTTATGAGTAGAATATATAGTATCTTAAAGGTCAATCAGTCTTTTAgg
ggccctagaatcagcattgataaaaccgaaaattcattcattttttcttt
gcatgaaaaataggctgattatgtcaaaaaatttagaaacaagtaaaaaa
catttaaggctcaaaaggctgatttcctaagaaacattgaggctgcttgg
taaaactagtttcttaaaaaaaaacgtgtaatttatATAAATCAAAGAGT
CATAGTTTTCATAAACTACGCTAAGAGCTCTTCGTTGAATTTTCTCAATT
TGTTTGTTGGTGTGTTTTACAAAATTCATCCAAATCAATGGACATTAAtt
agaattagaaaaaatataGGCGTGACACAAGGCCTTTgctgtttttaaag
aaatgaaGGGGCGAATGCgtcgaaagttcgattttagcctggacgtcaat
tgataattgcgcgcataggccccgacaaagtcaaATCTTTTCAATCAGTT
GCCTTTTAAAGGCCTATTTGGCGCTGGGTACTGGGCCAAAAAAACGTACT
AATGAATTCTCGGAATAACGGCTTGAGAGCAAATTTCTCCCAACTccgtt
ggaaagataaaagTTCTCAAATTCAGACCCGGTGTGAAGTTATACTTTTT
TCTTAGCCattctgttgaatttcaaaacttgaccggttcactgagacagg
ggtgtggtAGAGGAGTAGTCTATTTTGTGtctattttttcattgttttag
aCCTATATTTTGATATAGCTATGTTATATATAATTCCTCAATTGGTCTTA
CATTTCAGTTCAACCAGTAAGTCCAACATTCAAGTgaaatcaaaaacttt
gaggacattaaagatttttattgttttggtgCATATCTAAACACGCTGTA
AGTTCTGTGCTTAATAAAGCTATGATTACTTGTAGTCTTTAGAGAATTGT
TCGTTATCCTTGAAGCTTTTGCCAACGCAACAATTTTCTTGCGATAAAAA
TTACAAACGTTCATTTCTTCCAGCACCAGAAGAGTTTTTTGTCCTTCAAA
TCGTTTTAAAAAACTAACATGTCCAAATCTAAATAAATACTTTACTGCAT
TTTTTATCGTTTTAGAGGCTGTAATAATCTATATCTCAGGCGGACAAACA
TCGAGGAGGAACGAGCCGCAAATGGCATGAAtttaataagaacaatgagg
catTTTGCCAAAAGTGAGAAATGTACCTcaagtctttttttatttgagta
tTTTATATCGTTTTAGAGGCTGTAATAATCTATGcctcaaacaaacaaaa
aagaaggAGGAGCAAGCTGCAAACGGAatggcttttataagaacaatgag
gcggTTTGCCAAAATGAGTGATGTactgaaagtcttttttttatttaagt
attttataTCGTTTTAGAGGCTGTAATAATCTATGcctcaaacaaacaaa
aaagaaggAGGAGCAAGCCGCAAATGGCATGAATTTCATAAGACAAATAA
GAAAGTTTGCCAAAGTGAGTGATGTACTGAGAATCTTCTTTTGAGTATTT
GAGTTTTTTATCATATGCAACCAGGTTTTGTAAGTCTAGTTGCTCTTGCT
CATAACCTGATCGTATCAGTAAAAAGAGTTTCTTCGAAGGCCAAACACAA
AATAACGGTTTCTAGTCAGCTAGCTTCAGTGTCGAGAACTTTGCTTAAGG
ATTAATGAAAACCTTGTTTATGTCATGATAATTGTCCActtattttttaa
ggaaaaacatgGCTTACTGTTAAAGGGCAACTCATTCGATTTGGTCAGCC
TCTTGAAGGAGGAGGGTAAGAATTTTATTTGGTTAAACTTTTTTGGTTGC
TACTTTATACGTCTATTAGATTTTCAGGGTCCACGTCACGGGGCAGGGGC
AGGGGGACCATCTTTTTGCAAAACGAAAATCTTTTGGTTGCGTGTTCTTA
GACTCTATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccccccccccccaattcaT
GGCGTGGGAcctgttgttttgattttgctcaACTATCGTgagtttcattt
tttgaacaATGAATTACACAATATTTAATGAAAAGCGAATTTCTCTGCAA
AATATGAAACAAAACAATGGATTTTTAATTACTCTAATTAACTTTTGGAA
CGTAGAGTATCAAATCTAAGTTTTGACATTAAACTTAAGACTGAGAATAT
AACCAAGAGGTCAGTGACCCTGGAGGCAGTTTTTCAATCTTGGCCAAGCT
AAATATTTTGATCTAAGTTTATTTTTTAAGtagcattttcttgaaattca
gTTCCATTTTTCAAGGACAAATGGCTAGTATTTAACGTATTTGGTGTCac
ttttgtcaaaatttcaaaaaatgaaggtgcTTCAAAATGTCTTTCATTGG
GTTTGACACAACATTTTCAGGATAATGAGGGCTTTAAAATCGACCCTCTA
TGTATGTAGAACACTGATGTTTTATTCTTGGTGTACCAATCTtcaattga
ttgaaaatttgacccAAAGTTTAGACACCATCATTTATTgatgttttgca
aaaaaaatcaaaaccaagcCGAGACAAGCATTGAATTCGATTTAGCAATG
TTGATATATTCTTAGACTGTCTATTTGGAAAGTTTCCTGGTTGCAAACGC
AATGGGCACATGATTAAGTGAGTCTTCCCTTCCCCTCCTTTGTTACTTAA
GAAATAATTCTCTCTTGATAAGTTCTTCTCTGTTCTCTGTATCTATCAAT
CTCTCCAACCGTTCTGATTTTTTTCCTAAACTTTTACAGTAGAAGctcaa
taactcgaacaagcACGGGGAACTTTGAAATTTGTTATGGgttaaggttt
ataaggcattgttaactgaccataaaacttgttcgagtaaaAGAGATTCg
atttatagaggttcgaattcaAGAGACTGTATTTTTGTCGATCTCAGGAA
AGagaagaaactgaaaacaaAGAACAAGAAACGGCGCGCCGAGTCTACCA
CAACTTCCAGCGCATCGAGCGCGACTTCCACCACAAATAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00037197-exon-sc0001590-1491911889:36765..36899 | TCONS_00037197-exon-sc0001590-1491911889:36765..36899 | Clytia hemisphaerica | exon |
| TCONS_00037197-exon-sc0001590-1510915933:36765..36899 | TCONS_00037197-exon-sc0001590-1510915933:36765..36899 | Clytia hemisphaerica | exon |
| TCONS_00037197-exon-sc0001590-1575043694:36765..36899 | TCONS_00037197-exon-sc0001590-1575043694:36765..36899 | Clytia hemisphaerica | exon |
| TCONS_00037197-exon-sc0001590-1491911889:37407..37665 | TCONS_00037197-exon-sc0001590-1491911889:37407..37665 | Clytia hemisphaerica | exon |
| TCONS_00037197-exon-sc0001590-1510915933:37407..37665 | TCONS_00037197-exon-sc0001590-1510915933:37407..37665 | Clytia hemisphaerica | exon |
| TCONS_00037197-exon-sc0001590-1575043694:37407..37665 | TCONS_00037197-exon-sc0001590-1575043694:37407..37665 | Clytia hemisphaerica | exon |
| TCONS_00037197-exon-sc0001590-1491911889:42862..42954 | TCONS_00037197-exon-sc0001590-1491911889:42862..42954 | Clytia hemisphaerica | exon |
| TCONS_00037197-exon-sc0001590-1510915933:42862..42954 | TCONS_00037197-exon-sc0001590-1510915933:42862..42954 | Clytia hemisphaerica | exon |
| TCONS_00037197-exon-sc0001590-1575043694:42862..42954 | TCONS_00037197-exon-sc0001590-1575043694:42862..42954 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001590 | supercontig | sc0001590:36765..42954 + |
Blast
The following BLAST results are available for this feature:
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